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| Welcome to BioUML world |
What is BioUML?
BioUML is Java framework for systems biology. It spans the comprehensive range of capabilities including
access to databases with experimental data, tools for formalized
description of biological systems structure and functioning,
as well as tools for their visualization and simulations.
Currently BioUML framework consists from following parts:
- Meta model - provides an abstract layer to present structure
of any biological system as a clustered graph.
- Viewer - a universal viewer to visualize graphs of
biological systems structure as diagrams.
- Editor - universal diagram editor.
- Search engine - provides searching of components with the specified properties in biological pathway databases. The search result can be presented as graph and further edited by a user using BioUML editor.
- Modeler - allows a user to model/simulate dynamics of biological
systems using block diagrams.
- Standard diagram and data types - an attempt to standardize data types
and graphic notations for biological pathways.
- Database modules - provides incorporation of different databases
biological pathways into BioUML framework.
BioUML overview -
MS Power Point Presentation, 963 kb
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Version 0.8.1
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BioUML workbench version 0.8.1 was released at July 22, 2008.
More...
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Demo - flash movies
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We have created 7 flash movies that demonstrate main BioUML features.
Movies
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BioUML and BioModels
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BioUML workbench version 0.7.8 (beta) was able to simulate all 150 SBML
models from BioModlels database
(release 9).
According to our metrics now BioUML is the best simulator for SBML models.
Details...
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SBGN super-hackathon
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Materials for virtual participation of BioUML team in
SBGN super-hackathon in Okinawa.
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Please support BioUML
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If you find BioUML workbench useful
and would like it to remain free
please support it.
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Have questions?
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If you have any questions please contact us at
info@Biosoft.Ru
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