Test BIOMD0000000014.xml details

Test: BIOMD0000000014.xml - Ok

test	: BIOMD0000000014.xml
model	: xml, reaction graph
simulator engine	: DormandPrince
generated code	: BIOMD0000000014.java
results	: CSV file
plots	: -
comparison	: comparison with other simulators
status	: Ok
simulation time	: 0 s.

Parameters:
ZERO 1.0E-12
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000014.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
- no significant difference ( < 0.1%)
- small relative error ( > 0.1% and <50%)
- simulation results significantly differ ( >50%)

Variables: K_2_0 K_1_2 S_2_1_0 S_2_1_1 S_0_2_m1 K_MEKP_2_1 MAPKP S_RAFK_0_0_0 K_3_1 K_MEKP_2_2 K_3_0 S_0_1_m1 S_m1_0_m1 S_RAFK_1_m1_0 S_0_1_1 K_1_1 S_0_0_1 K_1_0 S_0_0_0 S_2_2_0 S_2_2_1 S_0_1_0 K_K_2_1_3_1 S_RAFK_0_1_0 K_2_2 S_1_2_m1 K_2_1 K_K_1_1_2_2 S_m1_2_m1 S_m1_2_0 S_1_0_1 S_m1_2_1 S_RAFK_m1_0_0 S_1_0_0 S_m1_m1_1 S_m1_m1_0 S_RAFK_m1_2_0 S_0_m1_m1 S_2_1_m1 S_1_m1_m1 S_m1_1_1 S_m1_1_0 K_RAFK_3_0 S_1_1_1 S_RAFK_m1_m1_0 S_1_1_0 S_m1_0_1 S_m1_0_0 S_1_2_0 S_1_2_1 K_K_2_0_3_1 S_2_0_m1 S_1_1_m1 S_RAFK_2_0_0 RAFK S_1_m1_1 RAFP MEKP S_RAFK_2_1_0 S_RAFK_m1_1_0 S_RAFK_2_m1_0 K_K_1_0_2_2 S_1_m1_0 S_2_m1_0 S_2_m1_1 S_0_m1_1 K_RAFP_3_1 S_0_m1_0 S_1_0_m1 K_MAPKP_1_2 K_MAPKP_1_1 S_RAFK_0_2_0 S_2_m1_m1 S_m1_1_m1 S_2_2_m1 S_0_2_0 S_0_2_1 S_RAFK_1_2_0 S_2_0_0 S_2_0_1 S_RAFK_1_1_0 S_0_0_m1 S_RAFK_2_2_0 S_RAFK_1_0_0 S_RAFK_0_m1_0 S_m1_m1_m1
Simulators: ByoDyn CVODE copasi edu.kgi.roadRunner Jarnac SBToolbox2 SBWOdeSolver MathSBML jsim BioUML

time

result

K_2_0

K_1_2

S_2_1_0

S_2_1_1

S_0_2_m1

K_MEKP_2_1

MAPKP

S_RAFK_0_0_0

K_3_1

K_MEKP_2_2

K_3_0

S_0_1_m1

S_m1_0_m1

S_RAFK_1_m1_0

S_0_1_1

K_1_1

S_0_0_1

K_1_0

S_0_0_0

S_2_2_0

S_2_2_1

S_0_1_0

K_K_2_1_3_1

S_RAFK_0_1_0

K_2_2

S_1_2_m1

K_2_1

K_K_1_1_2_2

S_m1_2_m1

S_m1_2_0

S_1_0_1

S_m1_2_1

S_RAFK_m1_0_0

S_1_0_0

S_m1_m1_1

S_m1_m1_0

S_RAFK_m1_2_0

S_0_m1_m1

S_2_1_m1

S_1_m1_m1

S_m1_1_1

S_m1_1_0

K_RAFK_3_0

S_1_1_1

S_RAFK_m1_m1_0

S_1_1_0

S_m1_0_1

S_m1_0_0

S_1_2_0

S_1_2_1

K_K_2_0_3_1

S_2_0_m1

S_1_1_m1

S_RAFK_2_0_0

RAFK

S_1_m1_1

RAFP

MEKP

S_RAFK_2_1_0

S_RAFK_m1_1_0

S_RAFK_2_m1_0

K_K_1_0_2_2

S_1_m1_0

S_2_m1_0

S_2_m1_1

S_0_m1_1

K_RAFP_3_1

S_0_m1_0

S_1_0_m1

K_MAPKP_1_2

K_MAPKP_1_1

S_RAFK_0_2_0

S_2_m1_m1

S_m1_1_m1

S_2_2_m1

S_0_2_0

S_0_2_1

S_RAFK_1_2_0

S_2_0_0

S_2_0_1

S_RAFK_1_1_0

S_0_0_m1

S_RAFK_2_2_0

S_RAFK_1_0_0

S_RAFK_0_m1_0

S_m1_m1_m1

0.0

BioUML

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

ByoDyn

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

CVODE

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

Jarnac

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

MathSBML

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

SBToolbox2

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

SBWOdeSolver

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

copasi

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

2,78592E-17

0,00000E0

1,39296E-17

0,00000E0

1,00000E-1

-1,39296E-17

3,00000E-1

2,00000E-1

0,00000E0

-2,78592E-17

0,00000E0

1,00000E-1

0.0

edu.kgi.roadRunner

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

2,77556E-17

0,00000E0

1,38778E-17

0,00000E0

-1,38778E-17

0,00000E0

1,00000E-1

4,16334E-17

3,00000E-1

2,00000E-1

0,00000E0

-2,77556E-17

0,00000E0

1,00000E-1

0.0

jsim

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

min

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

-1,38778E-17

0,00000E0

1,00000E-1

-1,39296E-17

3,00000E-1

2,00000E-1

0,00000E0

-2,78592E-17

0,00000E0

1,00000E-1

0.0

max

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

2,78592E-17

0,00000E0

1,38778E-17

0,00000E0

1,39296E-17

0,00000E0

1,00000E-1

4,16334E-17

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

mean

2,00000E-1

0,00000E0

3,00000E-1

0,00000E0

3,00000E-1

0,00000E0

4,00000E-1

0,00000E0

1,00000E-1

0,00000E0

3,00000E-1

2,00000E-1

0,00000E0

1,00000E-1

0.0

relative error(%)

0,00

0.2

BioUML

1,73041E-1

2,44645E-18

3,98678E-27

1,45636E-22

4,94969E-13

8,06885E-10

3,00000E-1

1,59497E-3

4,87049E-5

5,07022E-14

2,54235E-1

1,54540E-10

8,62519E-3

3,96006E-20

8,65979E-8

1,55041E-15

1,76008E-5

3,53655E-1

2,69800E-3

6,02988E-19

2,30527E-15

1,04616E-11

4,79446E-14

2,03523E-12

9,41559E-13

2,25133E-15

9,96319E-9

3,75906E-28

5,98024E-13

3,45183E-14

4,18523E-17

4,14831E-10

2,62272E-3

1,41323E-20

9,20515E-5

6,41618E-3

6,77799E-15

2,08624E-2

1,14591E-25

3,39617E-18

1,12951E-7

1,26429E-11

4,58683E-3

8,23259E-20

1,25127E-2

2,64558E-24

2,48185E-5

2,67523E-3

1,65555E-16

9,39599E-13

1,96378E-6

3,27530E-22

7,05964E-23

3,86485E-24

7,27383E-2

1,11195E-15

3,00000E-1

2,00000E-1

4,22355E-28

2,88845E-12

1,02290E-22

1,81777E-13

2,87784E-19

8,15833E-22

2,42100E-18

5,76777E-5

4,98956E-7

6,47078E-3

1,50186E-19

7,11184E-20

5,00628E-17

4,97464E-15

8,67347E-21

1,92433E-10

7,08385E-18

2,91754E-14

3,33072E-10

2,51421E-17

3,32841E-23

8,16961E-20

3,03189E-25

8,69858E-3

8,26702E-20

1,78725E-21

5,94453E-3

2,06864E-2

0.2

ByoDyn

1,73041E-1

2,44667E-18

3,99282E-27

1,45717E-22

4,94968E-13

8,06884E-10

3,00000E-1

1,59497E-3

4,87049E-5

5,07022E-14

2,54235E-1

1,54540E-10

8,62519E-3

3,96157E-20

8,65979E-8

1,55043E-15

1,76008E-5

3,53655E-1

2,69800E-3

6,03102E-19

2,30531E-15

1,04616E-11

4,79446E-14

2,03523E-12

9,41558E-13

2,25136E-15

9,96319E-9

3,76997E-28

5,98024E-13

3,45182E-14

4,18556E-17

4,14832E-10

2,62272E-3

1,41383E-20

9,20515E-5

6,41618E-3

6,77797E-15

2,08624E-2

1,14709E-25

3,39640E-18

1,12951E-7

1,26429E-11

4,58683E-3

8,23461E-20

1,25127E-2

2,64808E-24

2,48185E-5

2,67523E-3

1,65564E-16

9,39598E-13

1,96378E-6

3,27701E-22

7,06353E-23

3,86943E-24

7,27383E-2

1,11197E-15

3,00000E-1

2,00000E-1

4,23069E-28

2,88845E-12

1,02368E-22

1,81777E-13

2,87835E-19

8,16202E-22

2,42121E-18

5,76777E-5

4,98956E-7

6,47077E-3

1,50219E-19

7,11374E-20

5,00673E-17

4,97482E-15

8,67550E-21

1,92433E-10

7,08438E-18

2,91754E-14

3,33072E-10

2,51459E-17

3,33123E-23

8,17168E-20

3,03570E-25

8,69858E-3

8,27028E-20

1,78853E-21

5,94453E-3

2,06864E-2

0.2

CVODE

1,73041E-1

2,44648E-18

3,98776E-27

1,45646E-22

4,94969E-13

8,06885E-10

3,00000E-1

1,59497E-3

4,87049E-5

5,07023E-14

2,54235E-1

1,54540E-10

8,62519E-3

3,96027E-20

8,65979E-8

1,55042E-15

1,76008E-5

3,53655E-1

2,69800E-3

6,03003E-19

2,30528E-15

1,04616E-11

4,79446E-14

2,03523E-12

9,41559E-13

2,25134E-15

9,96319E-9

3,76009E-28

5,98024E-13

3,45183E-14

4,18528E-17

4,14831E-10

2,62272E-3

1,41331E-20

9,20515E-5

6,41618E-3

6,77799E-15

2,08624E-2

1,14608E-25

3,39621E-18

1,12951E-7

1,26429E-11

4,58683E-3

8,23286E-20

1,25127E-2

2,64592E-24

2,48185E-5

2,67523E-3

1,65557E-16

9,39600E-13

1,96378E-6

3,27553E-22

7,06014E-23

3,86565E-24

7,27383E-2

1,11196E-15

3,00000E-1

2,00000E-1

4,22528E-28

2,88845E-12

1,02302E-22

1,81777E-13

2,87790E-19

8,15878E-22

2,42103E-18

5,76777E-5

4,98956E-7

6,47078E-3

1,50191E-19

7,11209E-20

5,00634E-17

4,97467E-15

8,67373E-21

1,92433E-10

7,08393E-18

2,91754E-14

3,33072E-10

2,51426E-17

3,32879E-23

8,16989E-20

3,03259E-25

8,69858E-3

8,26747E-20

1,78744E-21

5,94453E-3

2,06864E-2

0.2

Jarnac

1,73041E-1

-1,78539E-17

-8,62648E-24

-5,77888E-20

4,95079E-13

8,06933E-10

3,00000E-1

1,59497E-3

4,87050E-5

5,04041E-14

2,54235E-1

1,54558E-10

8,62517E-3

3,96568E-20

8,66027E-8

1,55090E-15

1,76012E-5

3,53655E-1

2,69799E-3

-8,25598E-17

6,93889E-17

1,04636E-11

4,79499E-14

2,03592E-12

9,41665E-13

2,25223E-15

9,96347E-9

3,76419E-28

5,98085E-13

3,45247E-14

4,18805E-17

4,14853E-10

2,62272E-3

1,41520E-20

9,20516E-5

6,41617E-3

4,43668E-15

2,08623E-2

-1,18162E-22

3,39837E-18

1,12953E-7

1,26440E-11

4,58682E-3

8,24126E-20

1,25127E-2

2,65121E-24

2,48187E-5

2,67522E-3

1,65655E-16

9,39820E-13

1,96380E-6

2,11221E-19

7,07055E-23

7,50024E-20

7,27383E-2

1,11241E-15

3,00000E-1

2,00000E-1

-1,93436E-24

2,88896E-12

-2,02616E-15

1,81803E-13

2,88051E-19

2,76511E-19

-5,28350E-17

5,76781E-5

4,98962E-7

6,47076E-3

1,50338E-19

-5,55112E-17

5,00923E-17

4,97767E-15

-1,46981E-18

1,92443E-10

3,33067E-16

2,91858E-14

3,33112E-10

2,51662E-17

9,99936E-20

-9,28312E-18

3,04082E-25

8,69856E-3

3,73704E-15

1,79089E-21

5,94453E-3

2,06865E-2

0.2

MathSBML

1,73041E-1

2,44643E-18

3,98977E-27

1,45673E-22

4,94960E-13

8,06884E-10

3,00000E-1

1,59497E-3

4,87049E-5

5,07011E-14

2,54235E-1

1,54540E-10

8,62520E-3

3,96080E-20

8,65979E-8

1,55036E-15

1,76008E-5

3,53655E-1

2,69800E-3

6,03013E-19

2,30520E-15

1,04615E-11

4,79439E-14

2,03518E-12

9,41551E-13

2,25126E-15

9,96319E-9

3,76196E-28

5,98022E-13

3,45179E-14

4,18519E-17

4,14832E-10

2,62272E-3

1,41349E-20

9,20515E-5

6,41619E-3

6,77782E-15

2,08624E-2

1,14650E-25

3,39610E-18

1,12951E-7

1,26429E-11

4,58683E-3

8,23322E-20

1,25127E-2

2,64687E-24

2,48185E-5

2,67523E-3

1,65551E-16

9,39581E-13

1,96378E-6

3,27609E-22

7,06142E-23

3,86730E-24

7,27383E-2

1,11192E-15

3,00000E-1

2,00000E-1

4,22635E-28

2,88843E-12

1,02333E-22

1,81773E-13

2,87793E-19

8,15990E-22

2,42097E-18

5,76777E-5

4,98957E-7

6,47077E-3

1,50196E-19

7,11245E-20

5,00624E-17

4,97454E-15

8,67404E-21

1,92433E-10

7,08374E-18

2,91744E-14

3,33070E-10

2,51431E-17

3,32985E-23

8,17029E-20

3,03388E-25

8,69858E-3

8,26862E-20

1,78795E-21

5,94453E-3

2,06864E-2

0.2

SBToolbox2

1,73037E-1

2,75857E-18

5,78252E-27

1,83458E-22

5,18827E-13

8,17029E-10

3,00000E-1

1,59570E-3

4,86915E-5

5,35169E-14

2,54232E-1

1,58543E-10

8,63085E-3

4,93976E-20

8,76910E-8

1,68228E-15

1,76714E-5

3,53644E-1

2,69506E-3

7,03030E-19

2,49958E-15

1,09156E-11

4,77313E-14

2,20252E-12

9,70847E-13

2,43146E-15

1,00119E-8

3,62944E-28

6,11542E-13

3,58836E-14

4,72512E-17

4,19155E-10

2,62144E-3

1,73984E-20

9,19664E-5

6,42128E-3

7,30313E-15

2,08744E-2

1,54295E-25

3,80478E-18

1,13264E-7

1,28916E-11

4,58691E-3

9,76257E-20

1,25116E-2

3,53781E-24

2,48097E-5

2,67666E-3

1,84446E-16

9,87612E-13

1,96615E-6

4,09114E-22

8,85739E-23

5,58444E-24

7,27416E-2

1,20387E-15

3,00000E-1

2,00000E-1

6,83136E-28

3,02360E-12

1,36498E-22

1,92121E-13

3,34639E-19

1,00237E-21

2,72820E-18

5,76782E-5

4,99358E-7

6,47284E-3

1,76914E-19

8,42620E-20

5,65388E-17

5,60161E-15

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