Test: BIOMD0000000024.xml - Ok

test: BIOMD0000000024.xml
model: xml, reaction graph
simulator engine: DormandPrince
generated code: BIOMD0000000024.java
results: CSV file
plots: plot
comparison: comparison with other simulators
status: Ok
simulation time: 0 s.

Parameters:
ZERO 1.0E-100
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000024.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6618241436.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: P  M 
Simulators: ByoDyn  edu.kgi.roadRunner  Oscill8 Core  jsim  BioUML 
timeresult P M
0.0BioUML1,00000E01,00000E0
0.0ByoDyn1,00000E-151,00000E-15
0.0Oscill8 Core1,00000E-151,00000E-15
0.0edu.kgi.roadRunner1,00000E01,00000E0
0.0jsim1,00000E-151,00000E-15
0.0min 1,00000E-15 1,00000E-15
0.0max 1,00000E0 1,00000E0
0.0mean 1,00000E-15 1,00000E-15
0.0relative error(%) 0,000,00
0.2BioUML9,58870E-11,05887E0
0.2ByoDyn9,58869E-161,95861E-1
0.2Oscill8 Core1,00000E-151,20000E-15
0.2edu.kgi.roadRunner1,17063E01,04904E0
0.2jsim1,00000E-151,20000E-15
0.2min 9,58869E-16 1,20000E-15
0.2max 1,17063E0 1,04904E0
0.2mean 1,00000E-15 9,79305E-2
0.2relative error(%) 0,000,94
0.4BioUML9,19431E-11,11942E0
0.4ByoDyn9,19430E-163,83666E-1
0.4Oscill8 Core1,00000E-151,40000E-15
0.4edu.kgi.roadRunner1,36019E01,08135E0
0.4jsim1,00000E-151,40000E-15
0.4min 9,19430E-16 1,40000E-15
0.4max 1,36019E0 1,08135E0
0.4mean 1,00000E-15 1,91833E-1
0.4relative error(%) 0,003,5
0.6BioUML8,81614E-11,18156E0
0.6ByoDyn8,81614E-165,63743E-1
0.6Oscill8 Core1,00000E-151,60000E-15
0.6edu.kgi.roadRunner1,55900E01,09954E0
0.6jsim1,00000E-151,60000E-15
0.6min 8,81614E-16 1,60000E-15
0.6max 1,55900E0 1,09954E0
0.6mean 1,00000E-15 2,81871E-1
0.6relative error(%) 0,007,5
0.8BioUML8,45353E-11,24520E0
0.8ByoDyn8,45353E-167,36412E-1
0.8Oscill8 Core1,00000E-151,80000E-15
0.8edu.kgi.roadRunner1,75834E01,10657E0
0.8jsim1,00000E-151,80000E-15
0.8min 8,45353E-16 1,80000E-15
0.8max 1,75834E0 1,10657E0
0.8mean 1,00000E-15 3,68206E-1
0.8relative error(%) 0,0012,5
1.0BioUML8,10584E-11,31021E0
1.0ByoDyn8,10584E-169,01980E-1
1.0Oscill8 Core1,00000E-152,00000E-15
1.0edu.kgi.roadRunner1,95133E01,10517E0
1.0jsim1,00000E-152,00000E-15
1.0min 8,10584E-16 2,00000E-15
1.0max 1,95133E0 1,10517E0
1.0mean 1,00000E-15 4,50990E-1
1.0relative error(%) 0,0018,6
1.2BioUML7,77245E-11,37649E0
1.2ByoDyn7,77245E-161,06074E0
1.2Oscill8 Core1,00000E-152,20000E-15
1.2edu.kgi.roadRunner2,13304E01,09759E0
1.2jsim1,00000E-152,20000E-15
1.2min 7,77245E-16 2,20000E-15
1.2max 2,13304E0 1,09759E0
1.2mean 1,00000E-15 5,30369E-1
1.2relative error(%) 0,0025,4
1.4BioUML7,45277E-11,44391E0
1.4ByoDyn7,45277E-161,21297E0
1.4Oscill8 Core1,00000E-152,40000E-15
1.4edu.kgi.roadRunner2,30024E01,08555E0
1.4jsim1,00000E-152,40000E-15
1.4min 7,45277E-16 2,40000E-15
1.4max 2,30024E0 1,21297E0
1.4mean 1,00000E-15 5,42775E-1
1.4relative error(%) 0,0019,0
1.6BioUML7,14620E-11,51228E0
1.6ByoDyn7,14624E-161,35893E0
1.6Oscill8 Core1,00000E-152,60000E-15
1.6edu.kgi.roadRunner2,45108E01,07036E0
1.6jsim1,00000E-152,60000E-15
1.6min 7,14624E-16 2,60000E-15
1.6max 2,45108E0 1,35893E0
1.6mean 1,00000E-15 5,35181E-1
1.6relative error(%) 0,0011,3
1.8BioUML6,85127E-11,58022E0
1.8ByoDyn6,85232E-161,49890E0
1.8Oscill8 Core1,00000E-152,80000E-15
1.8edu.kgi.roadRunner2,58472E01,05300E0
1.8jsim1,00000E-152,80000E-15
1.8min 6,85232E-16 2,80000E-15
1.8max 2,58472E0 1,49890E0
1.8mean 1,00000E-15 5,26500E-1
1.8relative error(%) 0,005,4
2.0BioUML6,56732E-11,64738E0
2.0ByoDyn6,57048E-161,63310E0
2.0Oscill8 Core1,00000E-153,00000E-15
2.0edu.kgi.roadRunner2,70106E01,03420E0
2.0jsim1,00000E-153,00000E-15
2.0min 6,57048E-16 3,00000E-15
2.0max 2,70106E0 1,63310E0
2.0mean 1,00000E-15 5,17098E-1
2.0relative error(%) 0,000,87
2.2BioUML6,29420E-11,71411E0
2.2ByoDyn6,30024E-161,76179E0
2.2Oscill8 Core1,00000E-153,20000E-15
2.2edu.kgi.roadRunner2,80049E01,01450E0
2.2jsim1,00000E-153,20000E-15
2.2min 6,30024E-16 3,20000E-15
2.2max 2,80049E0 1,76179E0
2.2mean 1,00000E-15 5,07251E-1
2.2relative error(%) 0,000,00
2.4BioUML6,03174E-11,78073E0
2.4ByoDyn6,04111E-161,88519E0
2.4Oscill8 Core1,00000E-153,40000E-15
2.4edu.kgi.roadRunner2,88377E09,94334E-1
2.4jsim1,00000E-153,40000E-15
2.4min 6,04111E-16 3,40000E-15
2.4max 2,88377E0 1,88519E0
2.4mean 1,00000E-15 4,97167E-1
2.4relative error(%) 0,000,00
2.6BioUML5,77976E-11,84750E0
2.6ByoDyn5,79263E-162,00351E0
2.6Oscill8 Core1,00000E-153,60000E-15
2.6edu.kgi.roadRunner2,95184E09,74008E-1
2.6jsim1,00000E-153,60000E-15
2.6min 5,79263E-16 3,60000E-15
2.6max 2,95184E0 2,00351E0
2.6mean 1,00000E-15 4,87004E-1
2.6relative error(%) 0,000,00
2.8BioUML5,53804E-11,91466E0
2.8ByoDyn5,55438E-162,11696E0
2.8Oscill8 Core1,00000E-153,80000E-15
2.8edu.kgi.roadRunner3,00580E09,53769E-1
2.8jsim1,00000E-153,80000E-15
2.8min 5,55438E-16 3,80000E-15
2.8max 3,00580E0 2,11696E0
2.8mean 1,00000E-15 4,76884E-1
2.8relative error(%) 0,000,00
3.0BioUML5,30635E-11,98239E0
3.0ByoDyn5,32593E-162,22575E0
3.0Oscill8 Core1,00000E-154,00000E-15
3.0edu.kgi.roadRunner3,04679E09,33808E-1
3.0jsim1,00000E-154,00000E-15
3.0min 5,32593E-16 4,00000E-15
3.0max 3,04679E0 2,22575E0
3.0mean 1,00000E-15 4,66904E-1
3.0relative error(%) 0,000,00
3.2BioUML5,08444E-12,05086E0
3.2ByoDyn5,10687E-162,33006E0
3.2Oscill8 Core1,00000E-154,20000E-15
3.2edu.kgi.roadRunner3,07597E09,14272E-1
3.2jsim1,00000E-154,20000E-15
3.2min 5,10687E-16 4,20000E-15
3.2max 3,07597E0 2,33006E0
3.2mean 1,00000E-15 4,57136E-1
3.2relative error(%) 0,000,00
3.4BioUML4,87205E-12,12018E0
3.4ByoDyn4,89683E-162,43008E0
3.4Oscill8 Core1,00000E-154,40000E-15
3.4edu.kgi.roadRunner3,09448E08,95278E-1
3.4jsim1,00000E-154,40000E-15
3.4min 4,89683E-16 4,40000E-15
3.4max 3,09448E0 2,43008E0
3.4mean 1,00000E-15 4,47639E-1
3.4relative error(%) 0,000,00
3.6BioUML4,66889E-12,19042E0
3.6ByoDyn4,69542E-162,52599E0
3.6Oscill8 Core1,00000E-154,60000E-15
3.6edu.kgi.roadRunner3,10342E08,76918E-1
3.6jsim1,00000E-154,60000E-15
3.6min 4,69542E-16 4,60000E-15
3.6max 3,10342E0 2,52599E0
3.6mean 1,00000E-15 4,38459E-1
3.6relative error(%) 0,000,00
3.8BioUML4,47466E-12,26163E0
3.8ByoDyn4,50229E-162,61796E0
3.8Oscill8 Core1,00000E-154,80000E-15
3.8edu.kgi.roadRunner3,10386E08,59263E-1
3.8jsim1,00000E-154,80000E-15
3.8min 4,50229E-16 4,80000E-15
3.8max 3,10386E0 2,61796E0
3.8mean 1,00000E-15 4,29632E-1
3.8relative error(%) 0,000,00
4.0BioUML4,28906E-12,33380E0
4.0ByoDyn4,31711E-162,70614E0
4.0Oscill8 Core1,00000E-155,00000E-15
4.0edu.kgi.roadRunner3,09679E08,42372E-1
4.0jsim1,00000E-155,00000E-15
4.0min 4,31711E-16 5,00000E-15
4.0max 3,09679E0 2,70614E0
4.0mean 1,00000E-15 4,21186E-1
4.0relative error(%) 0,000,00
4.2BioUML4,11177E-12,40690E0
4.2ByoDyn4,13955E-162,79069E0
4.2Oscill8 Core1,00000E-155,20000E-15
4.2edu.kgi.roadRunner3,08313E08,26289E-1
4.2jsim1,00000E-155,20000E-15
4.2min 4,13955E-16 5,20000E-15
4.2max 3,08313E0 2,79069E0
4.2mean 1,00000E-15 4,13144E-1
4.2relative error(%) 0,000,00
4.4BioUML3,94246E-12,48085E0
4.4ByoDyn3,96928E-162,87177E0
4.4Oscill8 Core1,00000E-155,40000E-15
4.4edu.kgi.roadRunner3,06374E08,11049E-1
4.4jsim1,00000E-155,40000E-15
4.4min 3,96928E-16 5,40000E-15
4.4max 3,06374E0 2,87177E0
4.4mean 1,00000E-15 4,05524E-1
4.4relative error(%) 0,000,00
4.6BioUML3,78080E-12,55555E0
4.6ByoDyn1,23888E-22,94950E0
4.6Oscill8 Core1,00000E-155,60000E-15
4.6edu.kgi.roadRunner3,03943E07,96680E-1
4.6jsim1,00000E-155,60000E-15
4.6min 1,00000E-15 5,60000E-15
4.6max 3,03943E0 2,94950E0
4.6mean 6,19439E-3 3,98340E-1
4.6relative error(%) 0,000,00
4.8BioUML3,62645E-12,63085E0
4.8ByoDyn5,10398E-23,02385E0
4.8Oscill8 Core1,00000E-155,80000E-15
4.8edu.kgi.roadRunner3,01093E07,83203E-1
4.8jsim1,00000E-155,80000E-15
4.8min 1,00000E-15 5,80000E-15
4.8max 3,01093E0 3,02385E0
4.8mean 2,55199E-2 3,91602E-1
4.8relative error(%) 0,000,00
5.0BioUML3,47908E-12,70657E0
5.0ByoDyn1,32064E-13,09374E0
5.0Oscill8 Core1,00000E-156,00000E-15
5.0edu.kgi.roadRunner2,97890E07,70634E-1
5.0jsim1,00000E-156,00000E-15
5.0min 1,00000E-15 6,00000E-15
5.0max 2,97890E0 3,09374E0
5.0mean 6,60320E-2 3,85317E-1
5.0relative error(%) 0,000,00
5.2BioUML3,33832E-12,78250E0
5.2ByoDyn2,77204E-13,15458E0
5.2Oscill8 Core1,00000E-156,20000E-15
5.2edu.kgi.roadRunner2,94396E07,58984E-1
5.2jsim1,00000E-156,20000E-15
5.2min 1,00000E-15 6,20000E-15
5.2max 2,94396E0 3,15458E0
5.2mean 1,38602E-1 3,79492E-1
5.2relative error(%) 0,000,00
5.4BioUML3,20386E-12,85838E0
5.4ByoDyn5,10756E-13,19482E0
5.4Oscill8 Core1,00000E-156,40000E-15
5.4edu.kgi.roadRunner2,90667E07,48260E-1
5.4jsim1,00000E-156,40000E-15
5.4min 1,00000E-15 6,40000E-15
5.4max 2,90667E0 3,19482E0
5.4mean 2,55378E-1 3,74130E-1
5.4relative error(%) 0,000,00
5.6BioUML3,07533E-12,93393E0
5.6ByoDyn8,51986E-13,19853E0
5.6Oscill8 Core1,00000E-156,60000E-15
5.6edu.kgi.roadRunner2,86754E07,38465E-1
5.6jsim1,00000E-156,60000E-15
5.6min 1,00000E-15 6,60000E-15
5.6max 2,86754E0 3,19853E0
5.6mean 4,25993E-1 3,69232E-1
5.6relative error(%) 0,000,00
5.8BioUML2,95240E-13,00882E0
5.8ByoDyn1,32569E03,15839E0
5.8Oscill8 Core1,00000E-156,80000E-15
5.8edu.kgi.roadRunner2,82703E07,29599E-1
5.8jsim1,00000E-156,80000E-15
5.8min 1,00000E-15 6,80000E-15
5.8max 2,82703E0 3,15839E0
5.8mean 6,62845E-1 3,64800E-1
5.8relative error(%) 0,000,00
6.0BioUML2,83474E-13,08272E0
6.0ByoDyn1,95064E03,08308E0
6.0Oscill8 Core1,00000E-157,00000E-15
6.0edu.kgi.roadRunner2,78555E07,21661E-1
6.0jsim1,00000E-157,00000E-15
6.0min 1,00000E-15 7,00000E-15
6.0max 2,78555E0 3,08308E0
6.0mean 9,75322E-1 3,60830E-1
6.0relative error(%) 0,000,00
6.2BioUML2,72201E-13,15522E0
6.2ByoDyn2,74560E02,98720E0
6.2Oscill8 Core1,00000E-157,20000E-15
6.2edu.kgi.roadRunner2,74349E07,14643E-1
6.2jsim1,00000E-157,20000E-15
6.2min 1,00000E-15 7,20000E-15
6.2max 2,74560E0 2,98720E0
6.2mean 1,37175E0 3,57322E-1
6.2relative error(%) 0,005,6
6.4BioUML2,61391E-13,22590E0
6.4ByoDyn3,72618E02,88185E0
6.4Oscill8 Core1,00000E-157,40000E-15
6.4edu.kgi.roadRunner2,70120E07,08538E-1
6.4jsim1,00000E-157,40000E-15
6.4min 1,00000E-15 7,40000E-15
6.4max 3,72618E0 2,88185E0
6.4mean 1,35060E0 3,54269E-1
6.4relative error(%) 0,0011,9
6.6BioUML2,51011E-13,29432E0
6.6ByoDyn4,91064E02,77352E0
6.6Oscill8 Core1,00000E-157,60000E-15
6.6edu.kgi.roadRunner2,65897E07,03335E-1
6.6jsim1,00000E-157,60000E-15
6.6min 1,00000E-15 7,60000E-15
6.6max 4,91064E0 2,77352E0
6.6mean 1,32949E0 3,51667E-1
6.6relative error(%) 0,0018,8
6.8BioUML2,41033E-13,35999E0
6.8ByoDyn6,31257E02,66559E0
6.8Oscill8 Core1,00000E-157,80000E-15
6.8edu.kgi.roadRunner2,61710E06,99018E-1
6.8jsim1,00000E-157,80000E-15
6.8min 1,00000E-15 7,80000E-15
6.8max 6,31257E0 2,66559E0
6.8mean 1,30855E0 3,49509E-1
6.8relative error(%) 0,0026,1
7.0BioUML2,31428E-13,42240E0
7.0ByoDyn7,93730E02,55980E0
7.0Oscill8 Core1,00000E-158,00000E-15
7.0edu.kgi.roadRunner2,57584E06,95571E-1
7.0jsim1,00000E-158,00000E-15
7.0min 1,00000E-15 8,00000E-15
7.0max 7,93730E0 2,55980E0
7.0mean 1,28792E0 3,47786E-1
7.0relative error(%) 0,0033,7
7.2BioUML2,22168E-13,48098E0
7.2ByoDyn7,93730E02,55980E0
7.2Oscill8 Core1,00000E-158,20000E-15
7.2edu.kgi.roadRunner2,53542E06,92974E-1
7.2jsim1,00000E-158,20000E-15
7.2min 1,00000E-15 8,20000E-15
7.2max 7,93730E0 2,55980E0
7.2mean 1,26771E0 3,46487E-1
7.2relative error(%) 0,0036,0
7.4BioUML2,13228E-13,53516E0
7.4ByoDyn7,93730E02,55980E0
7.4Oscill8 Core1,00000E-158,40000E-15
7.4edu.kgi.roadRunner2,49604E06,91201E-1
7.4jsim1,00000E-158,40000E-15
7.4min 1,00000E-15 8,40000E-15
7.4max 7,93730E0 2,55980E0
7.4mean 1,24802E0 3,45600E-1
7.4relative error(%) 0,0038,1
7.6BioUML2,04585E-13,58434E0
7.6ByoDyn7,93730E02,55980E0
7.6Oscill8 Core1,00000E-158,60000E-15
7.6edu.kgi.roadRunner2,45790E06,90226E-1
7.6jsim1,00000E-158,60000E-15
7.6min 1,00000E-15 8,60000E-15
7.6max 7,93730E0 2,55980E0
7.6mean 1,22895E0 3,45113E-1
7.6relative error(%) 0,0040,0
7.8BioUML1,96218E-13,62787E0
7.8ByoDyn7,93730E02,55980E0
7.8Oscill8 Core1,00000E-158,80000E-15
7.8edu.kgi.roadRunner2,42117E06,90019E-1
7.8jsim1,00000E-158,80000E-15
7.8min 1,00000E-15 8,80000E-15
7.8max 7,93730E0 2,55980E0
7.8mean 1,21058E0 3,45009E-1
7.8relative error(%) 0,0041,7
8.0BioUML1,88147E-13,66754E0
8.0ByoDyn7,93730E02,55980E0
8.0Oscill8 Core1,00000E-159,00000E-15
8.0edu.kgi.roadRunner2,38599E06,90544E-1
8.0jsim1,00000E-159,00000E-15
8.0min 1,00000E-15 9,00000E-15
8.0max 7,93730E0 2,55980E0
8.0mean 1,19299E0 3,45272E-1
8.0relative error(%) 0,0043,3
8.2BioUML1,80408E-13,70612E0
8.2ByoDyn7,93730E02,55980E0
8.2Oscill8 Core1,00000E-159,20000E-15
8.2edu.kgi.roadRunner2,35250E06,91764E-1
8.2jsim1,00000E-159,20000E-15
8.2min 1,00000E-15 9,20000E-15
8.2max 7,93730E0 2,55980E0
8.2mean 1,17625E0 3,45882E-1
8.2relative error(%) 0,0044,8
8.4BioUML1,72987E-13,74361E0
8.4ByoDyn7,93730E02,55980E0
8.4Oscill8 Core1,00000E-159,40000E-15
8.4edu.kgi.roadRunner2,32083E06,93637E-1
8.4jsim1,00000E-159,40000E-15
8.4min 1,00000E-15 9,40000E-15
8.4max 7,93730E0 2,55980E0
8.4mean 1,16041E0 3,46819E-1
8.4relative error(%) 0,0046,2
8.6BioUML1,65871E-13,78003E0
8.6ByoDyn7,93730E02,55980E0
8.6Oscill8 Core1,00000E-159,60000E-15
8.6edu.kgi.roadRunner2,29108E06,96118E-1
8.6jsim1,00000E-159,60000E-15
8.6min 1,00000E-15 9,60000E-15
8.6max 7,93730E0 2,55980E0
8.6mean 1,14554E0 3,48059E-1
8.6relative error(%) 0,0047,7
8.8BioUML1,59049E-13,81539E0
8.8ByoDyn7,93730E02,55980E0
8.8Oscill8 Core1,00000E-159,80000E-15
8.8edu.kgi.roadRunner2,26334E06,99157E-1
8.8jsim1,00000E-159,80000E-15
8.8min 1,00000E-15 9,80000E-15
8.8max 7,93730E0 2,55980E0
8.8mean 1,13167E0 3,49578E-1
8.8relative error(%) 0,0049,1
9.0BioUML1,52508E-13,84968E0
9.0ByoDyn7,93730E02,55980E0
9.0Oscill8 Core1,00000E-151,00000E-14
9.0edu.kgi.roadRunner2,23768E07,02701E-1
9.0jsim1,00000E-151,00000E-14
9.0min 1,00000E-15 1,00000E-14
9.0max 7,93730E0 2,55980E0
9.0mean 1,11884E0 3,51351E-1
9.0relative error(%) 0,0050,4
9.2BioUML1,46236E-13,88293E0
9.2ByoDyn7,93730E02,55980E0
9.2Oscill8 Core1,00000E-151,02000E-14
9.2edu.kgi.roadRunner2,21418E07,06697E-1
9.2jsim1,00000E-151,02000E-14
9.2min 1,00000E-15 1,02000E-14
9.2max 7,93730E0 2,55980E0
9.2mean 1,10709E0 3,53349E-1
9.2relative error(%) 0,0051,7
9.4BioUML1,40222E-13,91515E0
9.4ByoDyn7,93730E02,55980E0
9.4Oscill8 Core1,00000E-151,04000E-14
9.4edu.kgi.roadRunner2,19288E07,11086E-1
9.4jsim1,00000E-151,04000E-14
9.4min 1,00000E-15 1,04000E-14
9.4max 7,93730E0 2,55980E0
9.4mean 1,09644E0 3,55543E-1
9.4relative error(%) 0,0052,9
9.6BioUML1,34455E-13,94636E0
9.6ByoDyn7,93730E02,55980E0
9.6Oscill8 Core1,00000E-151,06000E-14
9.6edu.kgi.roadRunner2,17381E07,15808E-1
9.6jsim1,00000E-151,06000E-14
9.6min 1,00000E-15 1,06000E-14
9.6max 7,93730E0 2,55980E0
9.6mean 1,08691E0 3,57904E-1
9.6relative error(%) 0,0054,2
9.8BioUML1,28925E-13,97656E0
9.8ByoDyn7,93730E02,55980E0
9.8Oscill8 Core1,00000E-151,08000E-14
9.8edu.kgi.roadRunner2,15699E07,20801E-1
9.8jsim1,00000E-151,08000E-14
9.8min 1,00000E-15 1,08000E-14
9.8max 7,93730E0 2,55980E0
9.8mean 1,07850E0 3,60400E-1
9.8relative error(%) 0,0055,3