Test BIOMD0000000046.xml details

Test: BIOMD0000000046.xml - Ok

test	: BIOMD0000000046.xml
model	: xml, reaction graph
simulator engine	: DormandPrince
generated code	: BIOMD0000000046.java
results	: CSV file
plots	: plot
comparison	: comparison with other simulators
status	: Ok
simulation time	: 0 s.

Parameters:
ZERO 1.0E-15
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Text color indicates difference between values:
- no significant difference ( < 0.1%)
- small relative error ( > 0.1% and <50%)
- simulation results significantly differ ( >50%)

Variables: H2O2 super coII coI ArH Ar NADrad NADH coIII O2 per2 per3
Simulators: ByoDyn copasi edu.kgi.roadRunner Jarnac SBToolbox2 VCell Oscill8 Core SBWOdeSolver MathSBML jsim BioUML

time

result

H2O2

super

coII

coI

ArH

NADrad

NADH

coIII

per2

per3

0.0

BioUML

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

ByoDyn

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

Jarnac

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

MathSBML

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

Oscill8 Core

0,00000E0

1,40000E0

0.0

SBToolbox2

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

SBWOdeSolver

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

VCell

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

copasi

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

edu.kgi.roadRunner

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

jsim

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

min

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

max

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

mean

0,00000E0

5,00000E2

0,00000E0

1,40000E0

0.0

relative error(%)

0,00

0.2

BioUML

1,86801E-11

4,06655E-17

1,98059E-11

5,37100E-12

5,00000E2

2,42011E-11

8,60173E-15

1,60000E-2

2,27640E-17

1,43914E-2

6,35710E-16

1,40000E0

0.2

ByoDyn

1,86801E-11

4,06656E-17

1,98052E-11

5,37169E-12

5,00000E2

2,42005E-11

8,60180E-15

1,60000E-2

2,27644E-17

1,43914E-2

6,35711E-16

1,40000E0

0.2

Jarnac

1,86808E-11

3,93285E-17

1,98184E-11

5,37205E-12

5,00000E2

2,41585E-11

8,44148E-15

1,60000E-2

2,11669E-17

1,43914E-2

-2,22045E-16

1,40000E0

0.2

MathSBML

-1,98737E-10

9,10477E-20

2,39522E-11

2,64860E-10

5,00000E2

2,40917E-11

3,97544E-16

1,60000E-2

7,43280E-24

1,43914E-2

6,04866E-19

1,40000E0

0.2

Oscill8 Core

1,86820E-11

4,17953E-17

1,98901E-11

5,37248E-12

2,43645E-11

8,75678E-15

1,60000E-2

2,40141E-17

1,43914E-2

1,40000E0

0.2

SBToolbox2

9,45730E-12

3,83054E-18

1,30465E-11

2,77585E-12

5,00000E2

1,78450E-11

2,71615E-15

1,60000E-2

5,88981E-18

1,43916E-2

4,65818E-16

1,40000E0

0.2

SBWOdeSolver

1,86814E-11

4,07161E-17

1,98094E-11

5,37214E-12

5,00000E2

2,42065E-11

8,60773E-15

1,60000E-2

2,28033E-17

1,43914E-2

6,36367E-16

1,40000E0

0.2

VCell

1,86824E-11

4,09242E-17

1,98385E-11

5,37285E-12

5,00000E2

2,42529E-11

8,64040E-15

1,60000E-2

2,30089E-17

1,43914E-2

6,40891E-16

1,40000E0

0.2

copasi

1,86778E-11

4,50105E-17

2,00974E-11

5,27699E-12

5,00000E2

2,46656E-11

9,05934E-15

1,60000E-2

2,74211E-17

1,43914E-2

7,65099E-16

1,40000E0

0.2

edu.kgi.roadRunner

1,86801E-11

4,06656E-17

1,98052E-11

5,37169E-12

5,00000E2

2,42005E-11

8,60180E-15

1,60000E-2

2,25133E-17

1,43914E-2

-1,32076E-15

1,40000E0

0.2

jsim

1,86801E-11

4,06655E-17

1,98052E-11

5,37169E-12

5,00000E2

2,42005E-11

8,60180E-15

1,60000E-2

2,27644E-17

1,43914E-2

6,35711E-16

1,40000E0

0.2

min

-1,98737E-10

9,10477E-20

1,30465E-11

2,77585E-12

5,00000E2

1,78450E-11

3,97544E-16

1,60000E-2

7,43280E-24

1,43914E-2

-1,32076E-15

1,40000E0

0.2

max

1,86824E-11

4,50105E-17

2,39522E-11

2,64860E-10

5,00000E2

2,46656E-11

9,05934E-15

1,60000E-2

2,74211E-17

1,43916E-2

7,65099E-16

1,40000E0

0.2

mean

1,86801E-11

4,06656E-17

1,98139E-11

5,37187E-12

5,00000E2

2,42005E-11

8,60180E-15

1,60000E-2

2,27644E-17

1,43914E-2

6,35711E-16

1,40000E0

0.2

relative error(%)

0,00

0.4

BioUML

9,00058E-11

5,69213E-15

2,01259E-10

2,81123E-11

5,00000E2

2,98641E-10

4,04698E-13

3,20000E-2

6,82961E-15

2,87655E-2

6,31966E-14

1,40000E0

0.4

ByoDyn

9,00057E-11

5,69213E-15

2,01258E-10

2,81134E-11

5,00000E2

2,98640E-10

4,04698E-13

3,20000E-2

6,82961E-15

2,87655E-2

6,31966E-14

1,40000E0

0.4

Jarnac

9,00065E-11

5,68386E-15

2,01287E-10

2,81138E-11

5,00000E2

2,98201E-10

4,04079E-13

3,20000E-2

6,81709E-15

2,87655E-2

6,41709E-14

1,40000E0

0.4

MathSBML

-4,92214E-13

9,96154E-15

3,24094E-10

1,79283E-11

5,00000E2

4,82037E-10

6,54085E-13

3,20000E-2

1,05811E-14

2,87655E-2

9,91431E-14

1,40000E0

0.4

Oscill8 Core

9,00083E-11

5,70680E-15

2,01320E-10

2,81143E-11

2,98865E-10

4,05435E-13

3,20000E-2

6,86738E-15

2,87655E-2

1,40000E0

0.4

SBToolbox2

2,89618E-11

-1,92650E-13

-2,77214E-12

8,69509E-12

5,00000E2

-3,00588E-10

-6,10399E-12

3,20000E-2

-1,51418E-12

2,87653E-2

-5,55350E-12

1,40000E0

0.4

SBWOdeSolver

9,00083E-11

5,69489E-15

2,01273E-10

2,81142E-11

5,00000E2

2,98671E-10

4,04812E-13

3,20000E-2

6,83426E-15

2,87655E-2

6,32237E-14

1,40000E0

0.4

VCell

9,00057E-11

5,69551E-15

2,01280E-10

2,81134E-11

5,00000E2

2,98711E-10

4,04888E-13

3,20000E-2

6,83662E-15

2,87655E-2

6,32552E-14

1,40000E0

0.4

copasi

9,00056E-11

6,07119E-15

2,02104E-10

2,81120E-11

5,00000E2

3,01836E-10

4,21753E-13

3,20000E-2

8,10265E-15

2,87655E-2

6,97627E-14

1,40000E0

0.4

edu.kgi.roadRunner

9,00057E-11

5,69213E-15

2,01258E-10

2,81134E-11

5,00000E2

2,98640E-10

4,04698E-13

3,20000E-2

6,82707E-15

2,87655E-2

5,39631E-14

1,40000E0

0.4

jsim

9,00057E-11

5,69213E-15

2,01258E-10

2,81134E-11

5,00000E2

2,98640E-10

4,04698E-13

3,20000E-2

6,82961E-15

2,87655E-2

6,31966E-14

1,40000E0

0.4

min

-4,92214E-13

-1,92650E-13

-2,77214E-12

8,69509E-12

5,00000E2

-3,00588E-10

-6,10399E-12

3,20000E-2

-1,51418E-12

2,87653E-2

-5,55350E-12

1,40000E0

0.4

max

9,00083E-11

9,96154E-15

3,24094E-10

2,81143E-11

5,00000E2

4,82037E-10

6,54085E-13

3,20000E-2

1,05811E-14

2,87655E-2

9,91431E-14

1,40000E0

0.4

mean

9,00057E-11

5,69351E-15

2,01277E-10

2,81134E-11

5,00000E2

2,98656E-10

4,04755E-13

3,20000E-2

6,83193E-15

2,87655E-2

6,32237E-14

1,40000E0

0.4

relative error(%)

0,00

0.6

BioUML

2,15997E-10

8,51695E-14

6,91829E-10

6,92220E-11

5,00000E2

1,21820E-9

3,42056E-12

4,80000E-2

1,60045E-13

4,31223E-2

8,28700E-13

1,40000E0

0.6

ByoDyn

2,15997E-10

8,51694E-14

6,91828E-10

6,92226E-11

5,00000E2

1,21820E-9

3,42056E-12

4,80000E-2

1,60045E-13

4,31223E-2

8,28700E-13

1,40000E0

0.6

Jarnac

2,15999E-10

8,51249E-14

6,91894E-10

6,92233E-11

5,00000E2

1,21753E-9

3,41860E-12

4,80000E-2

1,60007E-13

4,31223E-2

8,28893E-13

1,40000E0

0.6

MathSBML

2,19951E-10

1,07930E-13

6,91360E-10

7,10365E-11

5,00000E2

1,32208E-9

4,14358E-12

4,80000E-2

2,41078E-13

4,31223E-2

1,16576E-12

1,40000E0

0.6

Oscill8 Core

2,16001E-10

8,52336E-14

6,91883E-10

6,92239E-11

1,21849E-9

3,42240E-12

4,80000E-2

1,60297E-13

4,31223E-2

1,40000E0

0.6

SBToolbox2

6,73347E-11

-3,35460E-13

1,90842E-10

2,20321E-11

5,00000E2

3,00799E-11

-9,65441E-12

4,80000E-2

-2,66615E-12

4,31220E-2

-9,10478E-12

1,40000E0

0.6

SBWOdeSolver

2,16001E-10

8,51932E-14

6,91857E-10

6,92239E-11

5,00000E2

1,21828E-9

3,42113E-12

4,80000E-2

1,60108E-13

4,31223E-2

8,28913E-13

1,40000E0

0.6

VCell

2,15997E-10

8,51819E-14

6,91841E-10

6,92226E-11

5,00000E2

1,21828E-9

3,42098E-12

4,80000E-2

1,60087E-13

4,31223E-2

8,28909E-13

1,40000E0

0.6

copasi

2,15997E-10

8,65578E-14

6,92279E-10

6,92211E-11

5,00000E2

1,22261E-9

3,45926E-12

4,80000E-2

1,69923E-13

4,31223E-2

8,61186E-13

1,40000E0

0.6

edu.kgi.roadRunner

2,15997E-10

8,51694E-14

6,91828E-10

6,92226E-11

5,00000E2

1,21820E-9

3,42056E-12

4,80000E-2

1,60027E-13

4,31223E-2

8,02355E-13

1,40000E0

0.6

jsim

2,15997E-10

8,51694E-14

6,91828E-10

6,92226E-11

5,00000E2

1,21820E-9

3,42056E-12

4,80000E-2

1,60045E-13

4,31223E-2

8,28700E-13

1,40000E0

0.6

min

6,73347E-11

-3,35460E-13

1,90842E-10

2,20321E-11

5,00000E2

3,00799E-11

-9,65441E-12

4,80000E-2

-2,66615E-12

4,31220E-2

-9,10478E-12

1,40000E0

0.6

max

2,19951E-10

1,07930E-13

6,92279E-10

7,10365E-11

5,00000E2

1,32208E-9

4,14358E-12

4,80000E-2

2,41078E-13

4,31223E-2

1,16576E-12

1,40000E0

0.6

mean

2,15997E-10

8,51757E-14

6,91835E-10

6,92226E-11

5,00000E2

1,21824E-9

3,42077E-12

4,80000E-2

1,60066E-13

4,31223E-2

8,28893E-13

1,40000E0

0.6

relative error(%)

0,00

0.8

BioUML

3,96569E-10

5,33364E-13

1,58087E-9

1,28673E-10

5,00000E2

3,23483E-9

1,46705E-11

6,40000E-2

1,38119E-12

5,74620E-2

4,86934E-12

1,40000E0

0.8

ByoDyn

3,96569E-10

5,33364E-13

1,58087E-9

1,28673E-10

5,00000E2

3,23483E-9

1,46705E-11

6,40000E-2

1,38119E-12

5,74620E-2

4,86934E-12

1,40000E0

0.8

Jarnac

3,96572E-10

5,33233E-13

1,58100E-9

1,28674E-10

5,00000E2

3,23377E-9

1,46660E-11

6,40000E-2

1,38141E-12

5,74620E-2

4,87010E-12

1,40000E0

0.8

MathSBML

3,74038E-10

6,16440E-13

1,61845E-9

1,20423E-10

5,00000E2

3,38901E-9

1,61490E-11

6,40000E-2

1,99975E-12

5,74620E-2

6,25624E-12

1,40000E0

0.8

Oscill8 Core

3,96574E-10

5,33551E-13

1,58093E-9

1,28675E-10

3,23519E-9

1,46741E-11

6,40000E-2

1,38215E-12

5,74620E-2

1,40000E0

0.8

SBToolbox2

2,02742E-10

-8,16513E-14

8,91844E-10

6,66934E-11

5,00000E2

2,08478E-9

8,56040E-13

6,40000E-2

-7,44823E-13

5,74617E-2

-4,24495E-13

1,40000E0

0.8

SBWOdeSolver

3,96574E-10

5,33463E-13

1,58091E-9

1,28675E-10

5,00000E2

3,23497E-9

1,46721E-11

6,40000E-2

1,38156E-12

5,74620E-2

4,87019E-12

1,40000E0

0.8

VCell

3,96569E-10

5,33393E-13

1,58088E-9

1,28673E-10

5,00000E2

3,23491E-9

1,46712E-11

6,40000E-2

1,38133E-12

5,74620E-2

4,86982E-12

1,40000E0

0.8

copasi

3,96569E-10

5,38621E-13

1,58084E-9

1,28673E-10

5,00000E2

3,23933E-9

1,47513E-11

6,40000E-2

1,43210E-12

5,74620E-2

4,97333E-12

1,40000E0

0.8

edu.kgi.roadRunner

3,96569E-10

5,33364E-13

1,58087E-9

1,28673E-10

5,00000E2

3,23483E-9

1,46705E-11

6,40000E-2

1,38114E-12

5,74620E-2

4,83289E-12

1,40000E0

0.8

jsim

3,96569E-10

5,33364E-13

1,58087E-9

1,28673E-10

5,00000E2

3,23483E-9

1,46705E-11

6,40000E-2

1,38119E-12

5,74620E-2

4,86934E-12

1,40000E0

0.8

min

2,02742E-10

-8,16513E-14

8,91844E-10

6,66934E-11

5,00000E2

2,08478E-9

8,56040E-13

6,40000E-2

-7,44823E-13

5,74617E-2

-4,24495E-13

1,40000E0

0.8

max

3,96574E-10

6,16440E-13

1,61845E-9

1,28675E-10

5,00000E2

3,38901E-9

1,61490E-11

6,40000E-2

1,99975E-12

5,74620E-2

6,25624E-12

1,40000E0

0.8

mean

3,96569E-10

5,33378E-13

1,58087E-9

1,28673E-10

5,00000E2

3,23487E-9

1,46708E-11

6,40000E-2

1,38137E-12

5,74620E-2

4,86982E-12

1,40000E0

0.8

relative error(%)

0,00

1.0

BioUML

6,31625E-10

2,10050E-12

2,92113E-9

2,06433E-10

5,00000E2

6,82557E-9

4,36491E-11

8,00000E-2

6,99369E-12

7,17844E-2

1,85589E-11

1,40000E0

1.0

ByoDyn

6,31625E-10

2,10050E-12

2,92113E-9

2,06432E-10

5,00000E2

6,82557E-9

4,36491E-11

8,00000E-2

6,99369E-12

7,17844E-2

1,85589E-11

1,40000E0

1.0

Jarnac

6,31628E-10

2,10034E-12

2,92134E-9

2,06434E-10

5,00000E2

6,82405E-9

4,36435E-11

8,00000E-2

6,99585E-12

7,17844E-2

1,85605E-11

1,40000E0

1.0

MathSBML

6,19578E-10

2,25070E-12

2,93911E-9

2,00108E-10

5,00000E2

6,96977E-9

4,57632E-11

8,00000E-2

8,98442E-12

7,17844E-2

2,18691E-11

1,40000E0

1.0

Oscill8 Core

6,31631E-10

2,10093E-12

2,92119E-9

2,06434E-10

6,82603E-9

4,36551E-11

8,00000E-2

6,99642E-12

7,17844E-2

1,40000E0

1.0

SBToolbox2

4,35175E-10

5,68786E-13

2,10024E-9

1,42675E-10

5,00000E2

5,86357E-9

2,54274E-11

8,00000E-2

4,24965E-12

7,17845E-2

2,04871E-11

1,40000E0

1.0

SBWOdeSolver

6,31631E-10

2,10078E-12

2,92119E-9

2,06434E-10

5,00000E2

6,82580E-9

4,36526E-11

8,00000E-2

6,99507E-12

7,17844E-2

1,85613E-11

1,40000E0

1.0

VCell

6,31625E-10

2,10055E-12

2,92114E-9

2,06432E-10

5,00000E2

6,82566E-9

4,36500E-11

8,00000E-2

6,99401E-12

7,17844E-2

1,85598E-11

1,40000E0

1.0

copasi

6,31625E-10

2,10998E-12

2,92082E-9

2,06434E-10

5,00000E2

6,83008E-9

4,37710E-11

8,00000E-2

7,14488E-12

7,17844E-2

1,87945E-11

1,40000E0

1.0

edu.kgi.roadRunner

6,31625E-10

2,10050E-12

2,92113E-9

2,06432E-10

5,00000E2

6,82557E-9

4,36491E-11

8,00000E-2

6,99359E-12

7,17844E-2

1,85228E-11

1,40000E0

1.0

jsim

6,31625E-10

2,10050E-12

2,92113E-9

2,06432E-10

5,00000E2

6,82557E-9

4,36491E-11

8,00000E-2

6,99369E-12

7,17844E-2

1,85589E-11

1,40000E0

1.0

min

4,35175E-10

5,68786E-13

2,10024E-9

1,42675E-10

5,00000E2

5,86357E-9

2,54274E-11

8,00000E-2

4,24965E-12

7,17844E-2

1,85228E-11

1,40000E0

1.0

max

6,31631E-10

2,25070E-12

2,93911E-9

2,06434E-10

5,00000E2

6,96977E-9

4,57632E-11

8,00000E-2

8,98442E-12

7,17845E-2

2,18691E-11

1,40000E0

1.0

mean

6,31625E-10

2,10052E-12

2,92113E-9

2,06432E-10

5,00000E2

6,82562E-9

4,36496E-11

8,00000E-2

6,99454E-12

7,17844E-2

1,85605E-11

1,40000E0

1.0

relative error(%)

0,00

1.2

BioUML

9,21065E-10

6,20416E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24734E-8

1,03307E-10

9,60000E-2

2,54271E-11

8,60897E-2

5,39395E-11

1,40000E0

1.2

ByoDyn

9,21065E-10

6,20416E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24734E-8

1,03307E-10

9,60000E-2

2,54271E-11

8,60897E-2

5,39395E-11

1,40000E0

1.2

Jarnac

9,21067E-10

6,20368E-12

4,74384E-9

3,02468E-10

5,00000E2

1,24711E-8

1,03295E-10

9,60000E-2

2,54343E-11

8,60897E-2

5,39444E-11

1,40000E0

1.2

MathSBML

9,21497E-10

6,36031E-12

4,73714E-9

3,02006E-10

5,00000E2

1,25924E-8

1,05489E-10

9,60000E-2

2,98283E-11

8,60897E-2

5,99461E-11

1,40000E0

1.2

Oscill8 Core

9,21072E-10

6,20500E-12

4,74366E-9

3,02469E-10

1,24739E-8

1,03316E-10

9,60000E-2

2,54335E-11

8,60897E-2

1,40000E0

1.2

SBToolbox2

7,64650E-10

1,61586E-12

3,81603E-9

2,49986E-10

5,00000E2

1,13661E-8

6,40594E-11

9,59999E-2

1,23176E-11

8,60901E-2

5,36305E-11

1,40000E0

1.2

SBWOdeSolver

9,21072E-10

6,20479E-12

4,74365E-9

3,02469E-10

5,00000E2

1,24737E-8

1,03313E-10

9,60000E-2

2,54310E-11

8,60897E-2

5,39449E-11

1,40000E0

1.2

VCell

9,21065E-10

6,20424E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24735E-8

1,03308E-10

9,60000E-2

2,54278E-11

8,60897E-2

5,39409E-11

1,40000E0

1.2

copasi

9,21065E-10

6,21033E-12

4,74349E-9

3,02466E-10

5,00000E2

1,24775E-8

1,03389E-10

9,60000E-2

2,56925E-11

8,60897E-2

5,42681E-11

1,40000E0

1.2

edu.kgi.roadRunner

9,21065E-10

6,20416E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24734E-8

1,03307E-10

9,60000E-2

2,54270E-11

8,60897E-2

5,39052E-11

1,40000E0

1.2

jsim

9,21065E-10

6,20416E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24734E-8

1,03307E-10

9,60000E-2

2,54271E-11

8,60897E-2

5,39395E-11

1,40000E0

1.2

min

7,64650E-10

1,61586E-12

3,81603E-9

2,49986E-10

5,00000E2

1,13661E-8

6,40594E-11

9,59999E-2

1,23176E-11

8,60897E-2

5,36305E-11

1,40000E0

1.2

max

9,21497E-10

6,36031E-12

4,74384E-9

3,02469E-10

5,00000E2

1,25924E-8

1,05489E-10

9,60000E-2

2,98283E-11

8,60901E-2

5,99461E-11

1,40000E0

1.2

mean

9,21065E-10

6,20420E-12

4,74359E-9

3,02467E-10

5,00000E2

1,24734E-8

1,03308E-10

9,60000E-2

2,54294E-11

8,60897E-2

5,39409E-11

1,40000E0

1.2

relative error(%)

0,00

1.4

BioUML

1,26479E-9

1,50740E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09128E-10

1,12000E-1

7,37922E-11

1,00378E-1

1,30220E-10

1,40000E0

1.4

ByoDyn

1,26479E-9

1,50740E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09128E-10

1,12000E-1

7,37923E-11

1,00378E-1

1,30220E-10

1,40000E0

1.4

Jarnac

1,26479E-9

1,50730E-11

7,06654E-9

4,16745E-10

5,00000E2

2,06515E-8

2,09110E-10

1,12000E-1

7,38077E-11

1,00378E-1

1,30235E-10

1,40000E0

1.4

MathSBML

1,26588E-9

1,51919E-11

7,05687E-9

4,17289E-10

5,00000E2

2,07597E-8

2,11440E-10

1,12000E-1

8,17002E-11

1,00378E-1

1,39538E-10

1,40000E0

1.4

Oscill8 Core

1,26480E-9

1,50755E-11

7,06635E-9

4,16747E-10

2,06546E-8

2,09141E-10

1,12000E-1

7,38053E-11

1,00378E-1

1,40000E0

1.4

SBToolbox2

1,14692E-9

1,96176E-12

6,04860E-9

3,76373E-10

5,00000E2

1,84109E-8

1,24895E-10

1,11998E-1

-2,61083E-11

1,00380E-1

6,78438E-11

1,40000E0

1.4

SBWOdeSolver

1,26480E-9

1,50752E-11

7,06635E-9

4,16747E-10

5,00000E2

2,06544E-8

2,09138E-10

1,12000E-1

7,38011E-11

1,00378E-1

1,30230E-10

1,40000E0

1.4

VCell

1,26479E-9

1,50741E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09129E-10

1,12000E-1

7,37933E-11

1,00378E-1

1,30222E-10

1,40000E0

1.4

copasi

1,26479E-9

1,50790E-11

7,06642E-9

4,16744E-10

5,00000E2

2,06578E-8

2,09160E-10

1,12000E-1

7,41239E-11

1,00378E-1

1,30548E-10

1,40000E0

1.4

edu.kgi.roadRunner

1,26479E-9

1,50740E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09128E-10

1,12000E-1

7,37920E-11

1,00378E-1

1,30185E-10

1,40000E0

1.4

jsim

1,26479E-9

1,50740E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09128E-10

1,12000E-1

7,37923E-11

1,00378E-1

1,30220E-10

1,40000E0

1.4

min

1,14692E-9

1,96176E-12

6,04860E-9

3,76373E-10

5,00000E2

1,84109E-8

1,24895E-10

1,11998E-1

-2,61083E-11

1,00378E-1

6,78438E-11

1,40000E0

1.4

max

1,26588E-9

1,51919E-11

7,06654E-9

4,17289E-10

5,00000E2

2,07597E-8

2,11440E-10

1,12000E-1

8,17002E-11

1,00380E-1

1,39538E-10

1,40000E0

1.4

mean

1,26479E-9

1,50741E-11

7,06627E-9

4,16744E-10

5,00000E2

2,06540E-8

2,09129E-10

1,12000E-1

7,37972E-11

1,00378E-1

1,30222E-10

1,40000E0

1.4

relative error(%)

0,00

1.6

BioUML

1,66271E-9

3,18179E-11

9,89952E-9

5,49230E-10

5,00000E2

3,18264E-8

3,78092E-10

1,28000E-1

1,81968E-10

1,14649E-1

2,74757E-10

1,40000E0

1.6

ByoDyn

1,66271E-9

3,18179E-11

9,89952E-9

5,49231E-10

5,00000E2

3,18264E-8

3,78092E-10

1,28000E-1

1,81968E-10

1,14649E-1

2,74757E-10

1,40000E0

1.6

Jarnac

1,66271E-9

3,18161E-11

9,89978E-9

5,49232E-10

5,00000E2

3,18234E-8

3,78066E-10

1,28000E-1

1,81997E-10

1,14649E-1

2,74780E-10

1,40000E0

1.6

MathSBML

1,66292E-9

3,20399E-11

9,89191E-9

5,49383E-10

5,00000E2

3,19164E-8

3,80687E-10

1,28000E-1

1,97683E-10

1,14649E-1

2,89160E-10

1,40000E0

1.6

Oscill8 Core

1,66272E-9

3,18202E-11

9,89960E-9

5,49234E-10

3,18272E-8

3,78109E-10

1,28000E-1

1,81991E-10

1,14649E-1

1,40000E0

1.6

SBToolbox2

1,54291E-9

1,17583E-11

8,82645E-9

5,09711E-10

5,00000E2

2,86621E-8

2,70634E-10

1,28002E-1

1,07436E-11

1,14646E-1

1,70312E-10

1,40000E0

1.6

SBWOdeSolver

1,66272E-9

3,18199E-11

9,89960E-9

5,49235E-10

5,00000E2

3,18270E-8

3,78105E-10

1,28000E-1

1,81985E-10

1,14649E-1

2,74774E-10

1,40000E0

1.6

VCell

1,66271E-9

3,18180E-11

9,89952E-9

5,49231E-10

5,00000E2

3,18265E-8

3,78093E-10

1,28000E-1

1,81969E-10

1,14649E-1

2,74759E-10

1,40000E0

1.6

copasi

1,66271E-9

3,18234E-11

9,89963E-9

5,49231E-10

5,00000E2

3,18301E-8

3,78130E-10

1,28000E-1

1,82443E-10

1,14649E-1

2,75111E-10

1,40000E0

1.6

edu.kgi.roadRunner

1,66271E-9

3,18179E-11

9,89952E-9

5,49231E-10

5,00000E2

3,18264E-8

3,78092E-10

1,28000E-1

1,81967E-10

1,14649E-1

2,74721E-10

1,40000E0

1.6

jsim

1,66271E-9

3,18179E-11

9,89952E-9

5,49231E-10

5,00000E2

3,18264E-8

3,78092E-10

1,28000E-1

1,81968E-10

1,14649E-1

2,74757E-10

1,40000E0

1.6

min

1,54291E-9

1,17583E-11

8,82645E-9

5,09711E-10

5,00000E2

2,86621E-8

2,70634E-10

1,28000E-1

1,07436E-11

1,14646E-1

1,70312E-10

1,40000E0

1.6

max

1,66292E-9

3,20399E-11

9,89978E-9

5,49383E-10

5,00000E2

3,19164E-8

3,80687E-10

1,28002E-1

1,97683E-10

1,14649E-1

2,89160E-10

1,40000E0

1.6

mean

1,66271E-9

3,18179E-11

9,89952E-9

5,49231E-10

5,00000E2

3,18265E-8

3,78092E-10

1,28000E-1

1,81977E-10

1,14649E-1

2,74759E-10

1,40000E0

1.6

relative error(%)

0,00

1.8

BioUML

2,11472E-9

6,04218E-11

1,32491E-8

6,99894E-10

5,00000E2

4,64264E-8

6,27765E-10

1,44000E-1

3,96848E-10

1,28903E-1

5,23520E-10

1,40000E0

1.8

ByoDyn

2,11472E-9

6,04218E-11

1,32491E-8

6,99895E-10

5,00000E2

4,64264E-8

6,27765E-10

1,44000E-1

3,96848E-10

1,28903E-1

5,23520E-10

1,40000E0

1.8

Jarnac

2,11472E-9

6,04189E-11

1,32493E-8

6,99896E-10

5,00000E2

4,64226E-8

6,27727E-10

1,44000E-1

3,96902E-10

1,28903E-1

5,23559E-10

1,40000E0

1.8

MathSBML

2,11856E-9

6,15331E-11

1,32302E-8

7,01861E-10

5,00000E2

4,64425E-8

6,30227E-10

1,44000E-1

4,58122E-10

1,28903E-1

5,59647E-10

1,40000E0

1.8

Oscill8 Core

2,11473E-9

6,04253E-11

1,32492E-8

6,99898E-10

4,64274E-8

6,27787E-10

1,44000E-1

3,96889E-10

1,28903E-1

1,40000E0

1.8

SBToolbox2

1,99616E-9

3,63232E-11

1,21478E-8

6,61503E-10

5,00000E2

4,29951E-8

5,14476E-10

1,43996E-1

2,34627E-10

1,28902E-1

4,42971E-10

1,40000E0

1.8

SBWOdeSolver

2,11473E-9

6,04248E-11

1,32492E-8

6,99898E-10

5,00000E2

4,64272E-8

6,27783E-10

1,44000E-1

3,96880E-10

1,28903E-1

5,23548E-10

1,40000E0

1.8

VCell

2,11472E-9

6,04219E-11

1,32491E-8

6,99895E-10

5,00000E2

4,64265E-8

6,27766E-10

1,44000E-1

3,96851E-10

1,28903E-1

5,23524E-10

1,40000E0

1.8

copasi

2,11472E-9

6,04249E-11

1,32492E-8

6,99895E-10

5,00000E2

4,64298E-8

6,27797E-10

1,44000E-1

3,97635E-10

1,28903E-1

5,23913E-10

1,40000E0

1.8

edu.kgi.roadRunner

2,11472E-9

6,04218E-11

1,32491E-8

6,99895E-10

5,00000E2

4,64264E-8

6,27765E-10

1,44000E-1

3,96848E-10

1,28903E-1

5,23485E-10

1,40000E0

1.8

jsim

2,11472E-9

6,04218E-11

1,32491E-8

6,99895E-10

5,00000E2

4,64264E-8

6,27765E-10

1,44000E-1

3,96848E-10

1,28903E-1

5,23520E-10

1,40000E0

1.8

min

1,99616E-9

3,63232E-11

1,21478E-8

6,61503E-10

5,00000E2

4,29951E-8

5,14476E-10

1,43996E-1

2,34627E-10

1,28902E-1

4,42971E-10

1,40000E0

1.8

max

2,11856E-9

6,15331E-11

1,32493E-8

7,01861E-10

5,00000E2

4,64425E-8

6,30227E-10

1,44000E-1

4,58122E-10

1,28903E-1

5,59647E-10

1,40000E0

1.8

mean

2,11472E-9

6,04219E-11

1,32491E-8

6,99895E-10

5,00000E2

4,64265E-8

6,27765E-10

1,44000E-1

3,96866E-10

1,28903E-1

5,23524E-10

1,40000E0

1.8

relative error(%)

0,00

2.0

BioUML

2,62072E-9

1,05706E-10

1,71180E-8

8,68702E-10

5,00000E2

6,48608E-8

9,75597E-10

1,60000E-1

7,86496E-10

1,43139E-1

9,21150E-10

1,40000E0

2.0

ByoDyn

2,62072E-9

1,05706E-10

1,71180E-8

8,68703E-10

5,00000E2

6,48608E-8

9,75597E-10

1,60000E-1

7,86496E-10

1,43139E-1

9,21150E-10

1,40000E0

2.0

Jarnac

2,62072E-9

1,05702E-10

1,71183E-8

8,68704E-10

5,00000E2

6,48575E-8

9,75556E-10

1,60000E-1

7,86596E-10

1,43139E-1

9,21217E-10

1,40000E0

2.0

MathSBML

2,62428E-9

1,06655E-10

1,70970E-8

8,70482E-10

5,00000E2

6,48123E-8

9,76871E-10

1,60000E-1

8,91691E-10

1,43139E-1

9,76867E-10

1,40000E0

2.0

Oscill8 Core

2,62073E-9

1,05711E-10

1,71181E-8

8,68706E-10

6,48618E-8

9,75624E-10

1,60000E-1

7,86560E-10

1,43139E-1

1,40000E0

2.0

SBToolbox2

2,50652E-9

7,56566E-11

1,60136E-8

8,31756E-10

5,00000E2

6,14118E-8

8,56402E-10

1,60000E-1

6,45538E-10

1,43138E-1

8,85820E-10

1,40000E0

2.0

SBWOdeSolver

2,62073E-9

1,05710E-10

1,71181E-8

8,68707E-10

5,00000E2

6,48616E-8

9,75620E-10

1,60000E-1

7,86549E-10

1,43139E-1

9,21190E-10

1,40000E0

2.0

VCell

2,62072E-9

1,05706E-10

1,71180E-8

8,68703E-10

5,00000E2

6,48609E-8

9,75598E-10

1,60000E-1

7,86499E-10

1,43139E-1

9,21154E-10

1,40000E0

2.0

copasi

2,62072E-9

1,05710E-10

1,71181E-8

8,68703E-10

5,00000E2

6,48638E-8

9,75619E-10

1,60000E-1

7,87609E-10

1,43139E-1

9,21549E-10

1,40000E0

2.0

edu.kgi.roadRunner

2,62072E-9

1,05706E-10

1,71180E-8

8,68703E-10

5,00000E2

6,48608E-8

9,75597E-10

1,60000E-1

7,86495E-10

1,43139E-1

9,21114E-10

1,40000E0

2.0

jsim

2,62072E-9

1,05706E-10

1,71180E-8

8,68703E-10

5,00000E2

6,48608E-8

9,75597E-10

1,60000E-1

7,86496E-10

1,43139E-1

9,21150E-10

1,40000E0

2.0

min

2,50652E-9

7,56566E-11

1,60136E-8

8,31756E-10

5,00000E2

6,14118E-8

8,56402E-10

1,60000E-1

6,45538E-10

1,43138E-1

8,85820E-10

1,40000E0

2.0

max

2,62428E-9

1,06655E-10

1,71183E-8

8,70482E-10

5,00000E2

6,48638E-8

9,76871E-10

1,60000E-1

8,91691E-10

1,43139E-1

9,76867E-10

1,40000E0

2.0

mean

2,62072E-9

1,05706E-10

1,71180E-8

8,68703E-10

5,00000E2

6,48608E-8

9,75598E-10

1,60000E-1

7,86524E-10

1,43139E-1

9,21154E-10

1,40000E0

2.0

relative error(%)

0,00

2.2

BioUML

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44402E-9

1,57359E-1

1,52069E-9

1,40000E0

2.2

ByoDyn

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44402E-9

1,57359E-1

1,52069E-9

1,40000E0

2.2

Jarnac

3,18062E-9

1,73251E-10

2,15080E-8

1,05562E-9

5,00000E2

8,75005E-8

1,43840E-9

1,76000E-1

1,44421E-9

1,57359E-1

1,52081E-9

1,40000E0

2.2

MathSBML

3,17821E-9

1,73434E-10

2,14988E-8

1,05446E-9

5,00000E2

8,73876E-8

1,43742E-9

1,76000E-1

1,60401E-9

1,57359E-1

1,59472E-9

1,40000E0

2.2

Oscill8 Core

3,18063E-9

1,73260E-10

2,15078E-8

1,05563E-9

8,75044E-8

1,43846E-9

1,76000E-1

1,44411E-9

1,57359E-1

1,40000E0

2.2

SBToolbox2

3,07414E-9

1,29757E-10

2,04225E-8

1,02042E-9

5,00000E2

8,39113E-8

1,29643E-9

1,76004E-1

1,24351E-9

1,57362E-1

1,49884E-9

1,40000E0

2.2

SBWOdeSolver

3,18063E-9

1,73259E-10

2,15078E-8

1,05563E-9

5,00000E2

8,75042E-8

1,43845E-9

1,76000E-1

1,44410E-9

1,57359E-1

1,52074E-9

1,40000E0

2.2

VCell

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44402E-9

1,57359E-1

1,52069E-9

1,40000E0

2.2

copasi

3,18061E-9

1,73259E-10

2,15079E-8

1,05562E-9

5,00000E2

8,75060E-8

1,43845E-9

1,76000E-1

1,44543E-9

1,57359E-1

1,52106E-9

1,40000E0

2.2

edu.kgi.roadRunner

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44402E-9

1,57359E-1

1,52065E-9

1,40000E0

2.2

jsim

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44402E-9

1,57359E-1

1,52069E-9

1,40000E0

2.2

min

3,07414E-9

1,29757E-10

2,04225E-8

1,02042E-9

5,00000E2

8,39113E-8

1,29643E-9

1,76000E-1

1,24351E-9

1,57359E-1

1,49884E-9

1,40000E0

2.2

max

3,18063E-9

1,73434E-10

2,15080E-8

1,05563E-9

5,00000E2

8,75060E-8

1,43846E-9

1,76004E-1

1,60401E-9

1,57362E-1

1,59472E-9

1,40000E0

2.2

mean

3,18061E-9

1,73253E-10

2,15077E-8

1,05562E-9

5,00000E2

8,75033E-8

1,43843E-9

1,76000E-1

1,44406E-9

1,57359E-1

1,52069E-9

1,40000E0

2.2

relative error(%)

0,00

2.4

BioUML

3,79431E-9

2,69323E-10

2,64187E-8

1,26062E-9

5,00000E2

1,14692E-7

2,03214E-9

1,92000E-1

2,49107E-9

1,71562E-1

2,38309E-9

1,40000E0

2.4

ByoDyn

3,79431E-9

2,69323E-10

2,64187E-8

1,26062E-9

5,00000E2

1,14692E-7

2,03214E-9

1,92000E-1

2,49107E-9

1,71562E-1

2,38309E-9

1,40000E0

2.4

Jarnac

3,79431E-9

2,69322E-10

2,64190E-8

1,26062E-9

5,00000E2

1,14689E-7

2,03212E-9

1,92000E-1

2,49142E-9

1,71562E-1

2,38330E-9

1,40000E0

2.4

MathSBML

3,79341E-9

2,70391E-10

2,64040E-8

1,26021E-9

5,00000E2

1,14419E-7

2,02911E-9

1,92000E-1

2,76649E-9

1,71562E-1

2,49516E-9

1,40000E0

2.4

Oscill8 Core

3,79432E-9

2,69332E-10

2,64188E-8

1,26062E-9

1,14693E-7

2,03218E-9

1,92000E-1

2,49122E-9

1,71562E-1

1,40000E0

2.4

SBToolbox2

3,68484E-9

2,05767E-10

Test: BIOMD0000000046.xml - Ok

Reaction graph

Plots

Comparison with other simulators