Test: BIOMD0000000049.xml - Ok

test: BIOMD0000000049.xml
model: xml, reaction graph
simulator engine: DormandPrince
generated code: BIOMD0000000049.java
results: CSV file
plots: -
comparison: comparison with other simulators
status: Ok
simulation time: 0 s.

Parameters:
ZERO 1.0E-13
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000049.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Grb2_SOS_pShc_dpEGFR_c_Cbl  pTrkA_endo  B_Raf_Rap1_GTP  B_Raf_Ras_GTP_MEK  FRS2_dpEGFR  Rap1_GDP  L_NGFR  dppERK  B_Raf  pSOS  Crk_C3G_pFRS2_pTrkA_endo  Grb2_SOS_pShc_pTrkA  Grb2_SOS_pShc_dpEGFR  c_Raf_Ras_GTP_pMEK_ERK  c_Raf_Ras_GTP_MEK  pFRS2  pShc_dpEGFR_c_Cbl  B_Raf_Ras_GTP  MEK_ERK  FRS2  Shc_dpEGFR  EGFR  pMEK  Crk  ppERK  Crk_C3G  ppMEK  Shc_dpEGFR_c_Cbl  c_Cbl  ppERK_MKP3  B_Raf_Ras_GTP_pMEK_ERK  FRS2_pTrkA_endo  pFRS2_dpEGFR  SOS_Grb2  pFRS2_pTrkA  NGFR  B_Raf_Rap1_GTP_MEK_ERK  Grb2_SOS_pShc_dpEGFR_c_Cbl_ubiq  Shc_pTrkA_endo  Crk_C3G_pFRS2_dpEGFR  pDok  pFRS2_dpEGFR_c_Cbl_ubiq  pMEK_ERK  B_Raf_Ras_GTP_pMEK  B_Raf_Rap1_GTP_pMEK_ERK  L_dpEGFR  Crk_C3G_pFRS2_dpEGFR_c_Cbl_ubiq  proteosome  FRS2_pTrkA  FRS2_dpEGFR_c_Cbl  c_Raf_Ras_GTP_MEK_ERK  pShc  dppERK_MKP3  Rap1_GTP  pShc_pTrkA  Ras_GTP  L_EGFR  Crk_C3G_pFRS2_dpEGFR_c_Cbl  Shc  pSOS_Grb2  RasGAP  c_Raf_Ras_GTP_pMEK  B_Raf_Rap1_GTP_MEK  ERK  Shc_pTrkA  pShc_dpEGFR  MEK  B_Raf_Rap1_GTP_pMEK  MKP3  c_Raf_Ras_GTP  Ras_GDP  pFRS2_dpEGFR_c_Cbl  dpEGFR_c_Cbl  pShc_dpEGFR_c_Cbl_ubiq  pTrkA  pFRS2_pTrkA_endo  dpEGFR_c_Cbl_ubiq  pDok_RasGAP  Crk_C3G_pFRS2_pTrkA  SOS  FRS2_dpEGFR_c_Cbl_ubiq  Grb2_SOS_pShc_pTrkA_endo  Dok  L_EGFR_dimer  ppMEK_ERK  Grb2  pShc_pTrkA_endo  C3G  B_Raf_Ras_GTP_MEK_ERK  Grb2_SOS_pShc  Shc_dpEGFR_c_Cbl_ubiq  c_Raf 
Simulators: ByoDyn  copasi  edu.kgi.roadRunner  Jarnac  SBToolbox2  VCell  Oscill8 Core  SBWOdeSolver  MathSBML  jsim  BioUML 
timeresult Grb2_SOS_pShc_dpEGFR_c_Cbl pTrkA_endo B_Raf_Rap1_GTP B_Raf_Ras_GTP_MEK FRS2_dpEGFR Rap1_GDP L_NGFR dppERK B_Raf pSOS Crk_C3G_pFRS2_pTrkA_endo Grb2_SOS_pShc_pTrkA Grb2_SOS_pShc_dpEGFR c_Raf_Ras_GTP_pMEK_ERK c_Raf_Ras_GTP_MEK pFRS2 pShc_dpEGFR_c_Cbl B_Raf_Ras_GTP MEK_ERK FRS2 Shc_dpEGFR EGFR pMEK Crk ppERK Crk_C3G ppMEK Shc_dpEGFR_c_Cbl c_Cbl ppERK_MKP3 B_Raf_Ras_GTP_pMEK_ERK FRS2_pTrkA_endo pFRS2_dpEGFR SOS_Grb2 pFRS2_pTrkA NGFR B_Raf_Rap1_GTP_MEK_ERK Grb2_SOS_pShc_dpEGFR_c_Cbl_ubiq Shc_pTrkA_endo Crk_C3G_pFRS2_dpEGFR pDok pFRS2_dpEGFR_c_Cbl_ubiq pMEK_ERK B_Raf_Ras_GTP_pMEK B_Raf_Rap1_GTP_pMEK_ERK L_dpEGFR Crk_C3G_pFRS2_dpEGFR_c_Cbl_ubiq proteosome FRS2_pTrkA FRS2_dpEGFR_c_Cbl c_Raf_Ras_GTP_MEK_ERK pShc dppERK_MKP3 Rap1_GTP pShc_pTrkA Ras_GTP L_EGFR Crk_C3G_pFRS2_dpEGFR_c_Cbl Shc pSOS_Grb2 RasGAP c_Raf_Ras_GTP_pMEK B_Raf_Rap1_GTP_MEK ERK Shc_pTrkA pShc_dpEGFR MEK B_Raf_Rap1_GTP_pMEK MKP3 c_Raf_Ras_GTP Ras_GDP pFRS2_dpEGFR_c_Cbl dpEGFR_c_Cbl pShc_dpEGFR_c_Cbl_ubiq pTrkA pFRS2_pTrkA_endo dpEGFR_c_Cbl_ubiq pDok_RasGAP Crk_C3G_pFRS2_pTrkA SOS FRS2_dpEGFR_c_Cbl_ubiq Grb2_SOS_pShc_pTrkA_endo Dok L_EGFR_dimer ppMEK_ERK Grb2 pShc_pTrkA_endo C3G B_Raf_Ras_GTP_MEK_ERK Grb2_SOS_pShc Shc_dpEGFR_c_Cbl_ubiq c_Raf
0.0BioUML0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0ByoDyn0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0Jarnac0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0MathSBML0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0Oscill8 Core0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E0-2,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E0-0,00000E00,00000E00,00000E00,00000E01,00000E0-3,00000E-10,00000E0-0,00000E00,00000E00,00000E00,00000E05,00000E-1-0,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E0-0,00000E0-0,00000E00,00000E00,00000E00,00000E00,00000E00,00000E0-0,00000E00,00000E00,00000E00,00000E00,00000E00,00000E0-0,00000E0-0,00000E00,00000E01,00000E00,00000E0-0,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-1-1,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E0-0,00000E0-0,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E0-0,00000E00,00000E00,00000E0-
0.0SBToolbox20,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0SBWOdeSolver0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0VCell0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0copasi0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E0-2,12549E-160,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0edu.kgi.roadRunner0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E05,20417E-182,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E0-5,55112E-170,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0jsim0,00000E00,00000E00,00000E00,00000E00,00000E02,00000E-10,00000E00,00000E02,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E03,00000E-10,00000E01,00000E00,00000E00,00000E00,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E06,18940E-20,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E00,00000E01,00000E-10,00000E00,00000E02,60000E-10,00000E00,00000E06,80000E-10,00000E01,80000E-20,00000E01,00000E-10,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E00,00000E01,00000E-10,00000E00,00000E03,00000E-10,00000E00,00000E01,00000E00,00000E05,00000E-10,00000E00,00000E00,00000E05,00000E-1
0.0min 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 2,00000E-1 0,00000E0 0,00000E0 2,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E0 0,00000E0 3,00000E-1 0,00000E0 1,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 6,18940E-2 0,00000E0 0,00000E0 0,00000E0 -2,12549E-16 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 -5,55112E-17 0,00000E0 0,00000E0 1,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 2,60000E-1 0,00000E0 0,00000E0 6,80000E-1 0,00000E0 1,80000E-2 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 3,00000E-1 0,00000E0 0,00000E0 1,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 5,00000E-1
0.0max 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 2,00000E-1 0,00000E0 5,20417E-18 2,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E0 0,00000E0 3,00000E-1 0,00000E0 1,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 6,18940E-2 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 2,60000E-1 0,00000E0 0,00000E0 6,80000E-1 0,00000E0 1,80000E-2 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 3,00000E-1 0,00000E0 0,00000E0 1,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 5,00000E-1
0.0mean 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 2,00000E-1 0,00000E0 0,00000E0 2,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E0 0,00000E0 3,00000E-1 0,00000E0 1,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 6,18940E-2 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 2,60000E-1 0,00000E0 0,00000E0 6,80000E-1 0,00000E0 1,80000E-2 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 0,00000E0 1,00000E-1 0,00000E0 0,00000E0 3,00000E-1 0,00000E0 0,00000E0 1,00000E0 0,00000E0 5,00000E-1 0,00000E0 0,00000E0 0,00000E0 5,00000E-1
0.0relative error(%) 0,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,00
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