Test BIOMD0000000090.xml details

Test: BIOMD0000000090.xml - Ok

test	: BIOMD0000000090.xml
model	: xml, reaction graph
simulator engine	: DormandPrince
generated code	: BIOMD0000000090.java
results	: CSV file
plots	: plot
comparison	: comparison with other simulators
status	: Ok
simulation time	: 0 s.

Parameters:
ZERO 1.0E-100
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Text color indicates difference between values:
- no significant difference ( < 0.1%)
- small relative error ( > 0.1% and <50%)
- simulation results significantly differ ( >50%)

Variables: A2m A3c aco aps A3m sul S2 S1 N1 cys eth N2 pap A2c oxy hyd oah
Simulators: ByoDyn edu.kgi.roadRunner copasi SBToolbox2 Oscill8 Core SBWOdeSolver MathSBML jsim BioUML

time

result

A2m

A3c

aco

aps

A3m

sul

cys

eth

pap

A2c

oxy

hyd

oah

0.0

BioUML

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

ByoDyn

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

MathSBML

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

Oscill8 Core

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

1,50000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

SBToolbox2

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

SBWOdeSolver

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

1,50000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

copasi

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

1,50000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

jsim

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

min

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

max

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

mean

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,00000E-1

5,00000E-1

1,50000E0

0,00000E0

3,00000E-1

4,00000E0

2,00000E0

4,00000E-1

5,00000E-1

7,00000E0

5,00000E-1

1,50000E0

0.0

relative error(%)

0,00

0.2

BioUML

4,11583E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

4,35263E-1

1,56474E0

6,35875E-2

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

4,92383E-1

7,07978E0

5,13841E-1

1,47203E0

0.2

ByoDyn

5,00000E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

5,00000E-1

1,56474E0

0,00000E0

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

5,00000E-1

7,07978E0

5,13841E-1

1,47203E0

0.2

MathSBML

4,11583E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

4,35263E-1

1,56474E0

6,35875E-2

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

4,92383E-1

7,07978E0

5,13841E-1

1,47203E0

0.2

Oscill8 Core

1,42501E0

4,06045E-2

4,93685E-1

1,25910E0

3,80617E-1

1,62970E0

3,07123E-1

4,80000E0

7,22783E-1

4,09215E-1

7,41799E0

5,03776E-1

1,32896E0

0.2

SBToolbox2

4,11365E-1

1,50769E0

2,86934E-1

4,93587E-1

1,58861E0

3,80269E-1

4,35251E-1

1,56475E0

6,35744E-2

3,07762E-1

4,26594E0

1,93639E0

3,98931E-1

4,92334E-1

7,07984E0

5,13836E-1

1,47202E0

0.2

SBWOdeSolver

1,50762E0

2,86933E-1

4,93583E-1

1,58841E0

3,80271E-1

1,56474E0

3,07765E-1

4,26595E0

1,93641E0

3,98929E-1

7,07979E0

5,13841E-1

1,47203E0

0.2

copasi

4,11583E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

4,35263E-1

1,56474E0

6,35875E-2

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

4,92383E-1

7,07978E0

5,13841E-1

1,47203E0

0.2

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,32000E-1

1,50000E0

3,00000E-1

4,80000E0

2,00000E0

4,00000E-1

2,30000E1

5,00000E-1

1,50000E0

0.2

jsim

4,11583E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

4,35263E-1

1,56474E0

6,35875E-2

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

4,92383E-1

7,07978E0

5,13841E-1

1,47203E0

0.2

min

4,11365E-1

1,42501E0

4,06045E-2

4,93583E-1

1,25910E0

3,80269E-1

4,35251E-1

1,50000E0

0,00000E0

3,00000E-1

4,26594E0

7,22783E-1

3,98929E-1

4,92334E-1

7,07978E0

5,00000E-1

1,32896E0

0.2

max

5,00000E-1

1,50769E0

3,00000E-1

5,00000E-1

1,58861E0

4,32000E-1

5,00000E-1

1,62970E0

6,35875E-2

3,07765E-1

4,80000E0

2,00000E0

4,09215E-1

5,00000E-1

2,30000E1

5,13841E-1

1,50000E0

0.2

mean

4,11583E-1

1,50762E0

2,86933E-1

4,93583E-1

1,58842E0

3,80271E-1

4,35263E-1

1,56474E0

6,35875E-2

3,07765E-1

4,26594E0

1,93641E0

3,98929E-1

4,92383E-1

7,07979E0

5,13841E-1

1,47203E0

0.2

relative error(%)

0,00

0.4

BioUML

4,30558E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

3,89384E-1

1,61062E0

5,76395E-2

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

4,94332E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

ByoDyn

5,00000E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

5,00000E-1

1,61062E0

0,00000E0

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

5,00000E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

MathSBML

4,30558E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

3,89384E-1

1,61062E0

5,76395E-2

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

4,94332E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

Oscill8 Core

1,08988E0

5,49574E-3

4,87675E-1

7,22042E-1

3,65077E-1

1,64725E0

3,11808E-1

5,60000E0

2,55266E-1

4,26703E-1

7,75772E0

4,97159E-1

1,09253E0

0.4

SBToolbox2

4,30228E-1

1,50581E0

2,91682E-1

4,86385E-1

1,56975E0

3,61277E-1

3,89294E-1

1,61072E0

5,76151E-2

3,15514E-1

4,53345E0

1,94239E0

3,97573E-1

4,94200E-1

7,13151E0

5,27433E-1

1,45373E0

0.4

SBWOdeSolver

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

1,61061E0

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

copasi

4,30558E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

3,89384E-1

1,61062E0

5,76398E-2

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

4,94333E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,64000E-1

1,50000E0

3,00000E-1

5,60000E0

2,00000E0

4,00000E-1

3,90000E1

5,00000E-1

1,50000E0

0.4

jsim

4,30558E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

3,89384E-1

1,61062E0

5,76395E-2

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

4,94332E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

min

4,30228E-1

1,08988E0

5,49574E-3

4,86385E-1

7,22042E-1

3,61277E-1

3,89294E-1

1,50000E0

0,00000E0

3,00000E-1

4,53345E0

2,55266E-1

3,97573E-1

4,94200E-1

7,13139E0

4,97159E-1

1,09253E0

0.4

max

5,00000E-1

1,50581E0

3,00000E-1

5,00000E-1

1,56975E0

4,64000E-1

5,00000E-1

1,64725E0

5,76398E-2

3,15514E-1

5,60000E0

2,00000E0

4,26703E-1

5,00000E-1

3,90000E1

5,27433E-1

1,50000E0

0.4

mean

4,30558E-1

1,50567E0

2,91658E-1

4,86388E-1

1,56944E0

3,61279E-1

3,89384E-1

1,61062E0

5,76395E-2

3,15512E-1

4,53355E0

1,94236E0

3,97577E-1

4,94332E-1

7,13139E0

5,27431E-1

1,45381E0

0.4

relative error(%)

0,00

0.6

BioUML

4,59045E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54096E0

3,43158E-1

3,51488E-1

1,64851E0

5,23383E-2

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00392E-1

7,17705E0

5,40696E-1

1,44217E0

0.6

ByoDyn

5,00000E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54096E0

3,43158E-1

5,00000E-1

1,64851E0

0,00000E0

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00000E-1

7,17705E0

5,40696E-1

1,44217E0

0.6

MathSBML

4,59045E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54096E0

3,43158E-1

3,51488E-1

1,64851E0

5,23383E-2

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00392E-1

7,17705E0

5,40696E-1

1,44217E0

0.6

Oscill8 Core

6,95132E-1

7,43836E-4

4,83223E-1

3,58659E-1

3,55573E-1

1,64963E0

3,14022E-1

6,40000E0

8,67363E-2

4,41242E-1

7,90861E0

4,88173E-1

8,87792E-1

0.6

SBToolbox2

4,58719E-1

1,49972E0

2,94862E-1

4,78555E-1

1,54129E0

3,43153E-1

3,51284E-1

1,64870E0

5,22998E-2

3,23307E-1

4,81991E0

1,94769E0

3,95717E-1

5,00280E-1

7,17717E0

5,40691E-1

1,44212E0

0.6

SBWOdeSolver

1,49961E0

2,94798E-1

4,78551E-1

1,54095E0

3,43158E-1

1,64851E0

3,23308E-1

4,82010E0

1,94766E0

3,95719E-1

7,17705E0

5,40695E-1

1,44217E0

0.6

copasi

4,59047E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54095E0

3,43158E-1

3,51489E-1

1,64851E0

5,23383E-2

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00393E-1

7,17705E0

5,40696E-1

1,44217E0

0.6

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

4,96000E-1

1,50000E0

3,00000E-1

6,40000E0

2,00000E0

4,00000E-1

5,50000E1

5,00000E-1

1,50000E0

0.6

jsim

4,59045E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54096E0

3,43158E-1

3,51488E-1

1,64851E0

5,23383E-2

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00392E-1

7,17705E0

5,40696E-1

1,44217E0

0.6

min

4,58719E-1

6,95132E-1

7,43836E-4

4,78551E-1

3,58659E-1

3,43153E-1

3,51284E-1

1,50000E0

0,00000E0

3,00000E-1

4,81991E0

8,67363E-2

3,95717E-1

5,00000E-1

7,17705E0

4,88173E-1

8,87792E-1

0.6

max

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,54129E0

4,96000E-1

5,00000E-1

1,64963E0

5,23383E-2

3,23308E-1

6,40000E0

2,00000E0

4,41242E-1

5,00393E-1

5,50000E1

5,40696E-1

1,50000E0

0.6

mean

4,59045E-1

1,49961E0

2,94798E-1

4,78551E-1

1,54095E0

3,43158E-1

3,51488E-1

1,64851E0

5,23383E-2

3,23308E-1

4,82009E0

1,94766E0

3,95719E-1

5,00392E-1

7,17705E0

5,40695E-1

1,44217E0

0.6

relative error(%)

0,00

0.8

BioUML

4,90445E-1

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25909E-1

3,19466E-1

1,68053E0

4,76143E-2

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,07564E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

ByoDyn

5,00000E-1

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25909E-1

5,00000E-1

1,68053E0

0,00000E0

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,00000E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

MathSBML

4,90445E-1

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25909E-1

3,19466E-1

1,68053E0

4,76143E-2

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,07564E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

Oscill8 Core

3,93213E-1

1,00676E-4

4,80475E-1

1,64087E-1

3,51270E-1

1,64995E0

3,14232E-1

7,20000E0

2,83311E-2

4,50606E-1

7,96745E0

4,79419E-1

7,20146E-1

0.8

SBToolbox2

4,90041E-1

1,49253E0

2,96914E-1

4,70184E-1

1,50994E0

3,25898E-1

3,19139E-1

1,68088E0

4,75455E-2

3,31198E-1

5,12365E0

1,95248E0

3,93330E-1

5,07440E-1

7,21983E0

5,53540E-1

1,43462E0

0.8

SBWOdeSolver

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25910E-1

1,68053E0

3,31193E-1

5,12396E0

1,95239E0

3,93331E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

copasi

4,90446E-1

1,49244E0

2,96794E-1

4,70177E-1

1,50955E0

3,25909E-1

3,19467E-1

1,68053E0

4,76144E-2

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,07564E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

5,28000E-1

1,50000E0

3,00000E-1

7,20000E0

2,00000E0

4,00000E-1

7,10000E1

5,00000E-1

1,50000E0

0.8

jsim

4,90445E-1

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25909E-1

3,19466E-1

1,68053E0

4,76144E-2

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,07564E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

min

4,90041E-1

3,93213E-1

1,00676E-4

4,70177E-1

1,64087E-1

3,25898E-1

3,19139E-1

1,50000E0

0,00000E0

3,00000E-1

5,12365E0

2,83311E-2

3,93330E-1

5,00000E-1

7,21968E0

4,79419E-1

7,20146E-1

0.8

max

5,00000E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50994E0

5,28000E-1

5,00000E-1

1,68088E0

4,76144E-2

3,31198E-1

7,20000E0

2,00000E0

4,50606E-1

5,07564E-1

7,10000E1

5,53546E-1

1,50000E0

0.8

mean

4,90445E-1

1,49244E0

2,96795E-1

4,70177E-1

1,50955E0

3,25909E-1

3,19466E-1

1,68053E0

4,76143E-2

3,31193E-1

5,12396E0

1,95239E0

3,93332E-1

5,07564E-1

7,21968E0

5,53546E-1

1,43468E0

0.8

relative error(%)

0,00

1.0

BioUML

5,23781E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

2,91921E-1

1,70808E0

4,34092E-2

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,15499E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

ByoDyn

5,00000E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

5,00000E-1

1,70808E0

0,00000E0

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,00000E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

MathSBML

5,23781E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

2,91921E-1

1,70808E0

4,34092E-2

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,15499E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

Oscill8 Core

2,04680E-1

1,36262E-5

4,78976E-1

7,10147E-2

3,50468E-1

1,64999E0

3,12884E-1

8,00000E0

8,92980E-3

4,55874E-1

7,98893E0

4,71642E-1

5,84064E-1

1.0

SBToolbox2

5,23359E-1

1,48464E0

2,98076E-1

4,61365E-1

1,47667E0

3,09500E-1

2,91559E-1

1,70847E0

4,33428E-2

3,39180E-1

5,44336E0

1,95668E0

3,90426E-1

5,15358E-1

7,25961E0

5,65909E-1

1,42972E0

1.0

SBWOdeSolver

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

1,70808E0

3,39180E-1

5,44378E0

1,95659E0

3,90425E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

copasi

5,23781E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

2,91923E-1

1,70808E0

4,34092E-2

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,15500E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

5,60000E-1

1,50000E0

3,00000E-1

8,00000E0

2,00000E0

4,00000E-1

8,70000E1

5,00000E-1

1,50000E0

1.0

jsim

5,23781E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

2,91921E-1

1,70808E0

4,34092E-2

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,15499E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

min

5,00000E-1

2,04680E-1

1,36262E-5

4,61355E-1

7,10147E-2

3,09500E-1

2,91559E-1

1,50000E0

0,00000E0

3,00000E-1

5,44336E0

8,92980E-3

3,90425E-1

5,00000E-1

7,25945E0

4,71642E-1

5,84064E-1

1.0

max

5,23781E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

5,60000E-1

5,00000E-1

1,70847E0

4,34092E-2

3,39180E-1

8,00000E0

2,00000E0

4,55874E-1

5,15500E-1

8,70000E1

5,65916E-1

1,50000E0

1.0

mean

5,23781E-1

1,48450E0

2,97919E-1

4,61355E-1

1,47622E0

3,09513E-1

2,91921E-1

1,70808E0

4,34092E-2

3,39180E-1

5,44377E0

1,95659E0

3,90425E-1

5,15499E-1

7,25945E0

5,65916E-1

1,42967E0

1.0

relative error(%)

0,00

1.2

BioUML

5,58676E-1

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

2,67921E-1

1,73208E0

3,96704E-2

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,24142E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

ByoDyn

5,00000E-1

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

5,00000E-1

1,73208E0

0,00000E0

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,00000E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

MathSBML

5,58676E-1

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

2,67921E-1

1,73208E0

3,96704E-2

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,24142E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

Oscill8 Core

1,00261E-1

1,84425E-6

4,78225E-1

2,95221E-2

3,51760E-1

1,65000E0

3,10339E-1

8,80000E0

2,72901E-3

4,58592E-1

7,99638E0

4,64930E-1

4,73740E-1

1.2

SBToolbox2

5,58236E-1

1,47605E0

2,98559E-1

4,52176E-1

1,44172E0

2,93921E-1

2,67556E-1

1,73247E0

3,96082E-2

3,47272E-1

5,77776E0

1,96038E0

3,87022E-1

5,23986E-1

7,29648E0

5,77742E-1

1,42612E0

1.2

SBWOdeSolver

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

1,73208E0

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

copasi

5,58677E-1

1,47586E0

2,98381E-1

4,52170E-1

1,44132E0

2,93942E-1

2,67923E-1

1,73208E0

3,96704E-2

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,24142E-1

7,29629E0

5,77754E-1

1,42599E0

1.2

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

5,92000E-1

1,50000E0

3,00000E-1

8,80000E0

2,00000E0

4,00000E-1

1,03000E2

5,00000E-1

1,50000E0

1.2

jsim

5,58676E-1

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

2,67921E-1

1,73208E0

3,96704E-2

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,24142E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

min

5,00000E-1

1,00261E-1

1,84425E-6

4,52170E-1

2,95221E-2

2,93921E-1

2,67556E-1

1,50000E0

0,00000E0

3,00000E-1

5,77776E0

2,72901E-3

3,87016E-1

5,00000E-1

7,29629E0

4,64930E-1

4,73740E-1

1.2

max

5,58677E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

5,92000E-1

5,00000E-1

1,73247E0

3,96704E-2

3,47273E-1

8,80000E0

2,00000E0

4,58592E-1

5,24142E-1

1,03000E2

5,77754E-1

1,50000E0

1.2

mean

5,58676E-1

1,47586E0

2,98382E-1

4,52170E-1

1,44132E0

2,93942E-1

2,67921E-1

1,73208E0

3,96704E-2

3,47273E-1

5,77833E0

1,96033E0

3,87016E-1

5,24142E-1

7,29629E0

5,77754E-1

1,42598E0

1.2

relative error(%)

0,00

1.4

BioUML

5,94801E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

2,46819E-1

1,75318E0

3,63498E-2

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

5,33462E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

ByoDyn

5,00000E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

5,00000E-1

1,75318E0

0,00000E0

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

5,00000E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

MathSBML

5,94801E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

2,46819E-1

1,75318E0

3,63498E-2

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

5,33462E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

Oscill8 Core

4,68956E-2

2,49612E-7

4,77872E-1

1,19091E-2

3,54253E-1

1,65000E0

3,06881E-1

9,60000E0

8,12187E-4

4,59910E-1

7,99886E0

4,59160E-1

3,84299E-1

1.4

SBToolbox2

5,94364E-1

1,46667E0

2,98531E-1

4,42707E-1

1,40565E0

2,79151E-1

2,46460E-1

1,75356E0

3,63013E-2

3,55463E-1

6,12582E0

1,96369E0

3,83129E-1

5,33291E-1

7,33028E0

5,89013E-1

1,42311E0

1.4

SBWOdeSolver

1,46654E0

2,98350E-1

4,42698E-1

1,40520E0

2,79168E-1

1,75318E0

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

copasi

5,94802E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

2,46819E-1

1,75318E0

3,63498E-2

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

5,33462E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,24000E-1

1,50000E0

3,00000E-1

9,60000E0

2,00000E0

4,00000E-1

1,19000E2

5,00000E-1

1,50000E0

1.4

jsim

5,94801E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

2,46819E-1

1,75318E0

3,63498E-2

3,55462E-1

6,12649E0

1,96365E0

3,83126E-1

5,33462E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

min

5,00000E-1

4,68956E-2

2,49612E-7

4,42698E-1

1,19091E-2

2,79151E-1

2,46460E-1

1,50000E0

0,00000E0

3,00000E-1

6,12582E0

8,12187E-4

3,83126E-1

5,00000E-1

7,33018E0

4,59160E-1

3,84299E-1

1.4

max

5,94802E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,24000E-1

5,00000E-1

1,75356E0

3,63498E-2

3,55463E-1

9,60000E0

2,00000E0

4,59910E-1

5,33462E-1

1,19000E2

5,89023E-1

1,50000E0

1.4

mean

5,94801E-1

1,46654E0

2,98349E-1

4,42698E-1

1,40520E0

2,79168E-1

2,46819E-1

1,75318E0

3,63498E-2

3,55461E-1

6,12649E0

1,96365E0

3,83126E-1

5,33462E-1

7,33018E0

5,89023E-1

1,42288E0

1.4

relative error(%)

0,00

1.6

BioUML

6,31801E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

2,28145E-1

1,77185E0

3,34028E-2

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,43417E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

ByoDyn

5,00000E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

5,00000E-1

1,77185E0

0,00000E0

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,00000E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

MathSBML

6,31801E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

2,28145E-1

1,77185E0

3,34028E-2

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,43417E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

Oscill8 Core

2,11563E-2

3,37837E-8

4,77714E-1

4,69574E-3

3,57454E-1

1,65000E0

3,02732E-1

1,04000E1

2,36263E-4

4,60521E-1

7,99965E0

4,54175E-1

3,11778E-1

1.6

SBToolbox2

6,31361E-1

1,45678E0

2,98145E-1

4,33018E-1

1,36860E0

2,65139E-1

2,27801E-1

1,77217E0

3,33716E-2

3,63733E-1

6,48637E0

1,96658E0

3,78787E-1

5,43228E-1

7,36126E0

5,99677E-1

1,42022E0

1.6

SBWOdeSolver

1,45658E0

2,97957E-1

4,33006E-1

1,36820E0

2,65163E-1

1,77185E0

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

copasi

6,31801E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

2,28145E-1

1,77185E0

3,34028E-2

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,43417E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,56000E-1

1,50000E0

3,00000E-1

1,04000E1

2,00000E0

4,00000E-1

1,35000E2

5,00000E-1

1,50000E0

1.6

jsim

6,31801E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

2,28145E-1

1,77185E0

3,34028E-2

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,43417E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

min

5,00000E-1

2,11563E-2

3,37837E-8

4,33006E-1

4,69574E-3

2,65139E-1

2,27801E-1

1,50000E0

0,00000E0

3,00000E-1

6,48637E0

2,36263E-4

3,78778E-1

5,00000E-1

7,36117E0

4,54175E-1

3,11778E-1

1.6

max

6,31801E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,56000E-1

5,00000E-1

1,77217E0

3,34028E-2

3,63733E-1

1,04000E1

2,00000E0

4,60521E-1

5,43417E-1

1,35000E2

5,99696E-1

1,50000E0

1.6

mean

6,31801E-1

1,45658E0

2,97958E-1

4,33006E-1

1,36820E0

2,65163E-1

2,28145E-1

1,77185E0

3,34028E-2

3,63729E-1

6,48719E0

1,96660E0

3,78778E-1

5,43417E-1

7,36117E0

5,99696E-1

1,41989E0

1.6

relative error(%)

0,00

1.8

BioUML

6,69291E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

2,11544E-1

1,78846E0

3,07884E-2

3,72055E-1

6,85939E0

1,96921E0

3,74000E-1

5,53951E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

ByoDyn

5,00000E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

5,00000E-1

1,78846E0

0,00000E0

3,72055E-1

6,85939E0

1,96921E0

3,74000E-1

5,00000E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

MathSBML

6,69291E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

2,11544E-1

1,78846E0

3,07884E-2

3,72055E-1

6,85939E0

1,96921E0

3,74000E-1

5,53951E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

Oscill8 Core

9,27306E-3

4,57245E-9

4,77645E-1

1,81963E-3

3,61128E-1

1,65000E0

2,98065E-1

1,12000E1

6,73798E-5

4,60794E-1

7,99990E0

4,49826E-1

2,52965E-1

1.8

SBToolbox2

6,68822E-1

1,44629E0

2,97515E-1

4,23170E-1

1,33114E0

2,51867E-1

2,11220E-1

1,78876E0

3,07440E-2

3,72064E-1

6,85842E0

1,96928E0

3,74015E-1

5,53743E-1

7,38947E0

6,09732E-1

1,41714E0

1.8

SBWOdeSolver

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51896E-1

1,78846E0

3,72055E-1

6,85940E0

1,96921E0

3,74000E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

copasi

6,69291E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

2,11543E-1

1,78846E0

3,07884E-2

3,72055E-1

6,85940E0

1,96921E0

3,74000E-1

5,53951E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,88000E-1

1,50000E0

3,00000E-1

1,12000E1

2,00000E0

4,00000E-1

1,51000E2

5,00000E-1

1,50000E0

1.8

jsim

6,69291E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

2,11544E-1

1,78846E0

3,07884E-2

3,72055E-1

6,85939E0

1,96921E0

3,74000E-1

5,53951E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

min

5,00000E-1

9,27306E-3

4,57245E-9

4,23159E-1

1,81963E-3

2,51867E-1

2,11220E-1

1,50000E0

0,00000E0

2,98065E-1

6,85842E0

6,73798E-5

3,74000E-1

5,00000E-1

7,38937E0

4,49826E-1

2,52965E-1

1.8

max

6,69291E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

6,88000E-1

5,00000E-1

1,78876E0

3,07884E-2

3,72064E-1

1,12000E1

2,00000E0

4,60794E-1

5,53951E-1

1,51000E2

6,09752E-1

1,50000E0

1.8

mean

6,69291E-1

1,44605E0

2,97319E-1

4,23159E-1

1,33071E0

2,51895E-1

2,11544E-1

1,78846E0

3,07884E-2

3,72055E-1

6,85939E0

1,96921E0

3,74000E-1

5,53951E-1

7,38937E0

6,09752E-1

1,41672E0

1.8

relative error(%)

0,00

2.0

BioUML

7,06865E-1

1,43501E0

2,96525E-1

4,13212E-1

1,29314E0

2,39335E-1

1,96732E-1

1,80327E0

2,84691E-2

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,64988E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

ByoDyn

5,00000E-1

1,43501E0

2,96525E-1

4,13212E-1

1,29314E0

2,39335E-1

5,00000E-1

1,80327E0

0,00000E0

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,00000E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

MathSBML

7,06865E-1

1,43501E0

2,96524E-1

4,13212E-1

1,29314E0

2,39335E-1

1,96732E-1

1,80327E0

2,84691E-2

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,64988E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

Oscill8 Core

3,97049E-3

6,18854E-10

4,77616E-1

6,95850E-4

3,65177E-1

1,65000E0

2,93016E-1

1,20000E1

1,88848E-5

4,60913E-1

7,99997E0

4,45990E-1

2,05264E-1

2.0

SBToolbox2

7,06404E-1

1,43522E0

2,96718E-1

4,13220E-1

1,29358E0

2,39302E-1

1,96440E-1

1,80356E0

2,84270E-2

3,80426E-1

7,24102E0

1,97158E0

3,68842E-1

5,64758E-1

7,41496E0

6,19158E-1

1,41374E0

2.0

SBWOdeSolver

1,43501E0

2,96525E-1

4,13212E-1

1,29314E0

2,39335E-1

1,80327E0

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

copasi

7,06865E-1

1,43501E0

2,96525E-1

4,13212E-1

1,29314E0

2,39335E-1

1,96732E-1

1,80327E0

2,84691E-2

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,64988E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

edu.kgi.roadRunner

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

7,20000E-1

1,50000E0

3,00000E-1

1,20000E1

2,00000E0

4,00000E-1

1,67000E2

5,00000E-1

1,50000E0

2.0

jsim

7,06865E-1

1,43501E0

2,96524E-1

4,13212E-1

1,29314E0

2,39335E-1

1,96732E-1

1,80327E0

2,84691E-2

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,64988E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

min

5,00000E-1

3,97049E-3

6,18854E-10

4,13212E-1

6,95850E-4

2,39302E-1

1,96440E-1

1,50000E0

0,00000E0

2,93016E-1

7,24102E0

1,88848E-5

3,68822E-1

5,00000E-1

7,41490E0

4,45990E-1

2,05264E-1

2.0

max

7,06865E-1

1,50000E0

3,00000E-1

5,00000E-1

1,50000E0

7,20000E-1

5,00000E-1

1,80356E0

2,84691E-2

3,80426E-1

1,20000E1

2,00000E0

4,60913E-1

5,64988E-1

1,67000E2

6,19179E-1

1,50000E0

2.0

mean

7,06865E-1

1,43501E0

2,96525E-1

4,13212E-1

1,29314E0

2,39335E-1

1,96732E-1

1,80327E0

2,84691E-2

3,80416E-1

7,24211E0

1,97153E0

3,68822E-1

5,64988E-1

7,41490E0

6,19179E-1

1,41326E0

2.0

relative error(%)

0,00

2.2

BioUML

7,44103E-1

1,42357E0

2,95655E-1

4,03213E-1

1,25590E0

2,27450E-1

1,83479E-1

1,81652E0

2,64112E-2

3,88789E-1

7,63438E0

1,97359E0

3,63276E-1

5,76430E-1

7,43791E0

6,27965E-1

1,40947E0

2.2

ByoDyn

5,00000E-1

1,42357E0

2,95655E-1

4,03213E-1

1,25590E0

2,27450E-1

5,00000E-1

1,81652E0

0,00000E0

Test: BIOMD0000000090.xml - Ok

Reaction graph

Plots

Comparison with other simulators