Test: BIOMD0000000001.xml - Ok

test: BIOMD0000000001.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000001.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6613849442.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: D  kf_1  kf_0  kf_3  IL  A  kf_12  BLL  B  kf_13  DLL  I  ALL  DL  ILL  kf_8  AL  kf_4  BL  kf_7 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation D kf_1 kf_0 kf_3 IL A kf_12 BLL B kf_13 DLL I ALL DL ILL kf_8 AL kf_4 BL kf_7
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,001,50000E30,003,00000E30,003,00000E30,000,00000E00,000,00000E00,003,00000E30,000,00000E00,001,66058E-50,001,50000E30,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,50000E30,000,00000E00,001,50000E30,000,00000E00,003,00000E30,00
0.0 ByoDyn0,00000E00,001,50000E30,003,00000E30,003,00000E30,000,00000E00,000,00000E00,003,00000E30,000,00000E00,001,66058E-50,001,50000E30,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,50000E30,000,00000E00,001,50000E30,000,00000E00,003,00000E30,00
0.0 MathSBML0,00000E00,00 - - - - - - 0,00000E00,000,00000E00,00 - - 0,00000E00,001,66058E-210,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - -
0.0 Oscill8 Core - - - - - - - - 0,00000E00,000,00000E00,00 - - 0,00000E00,001,66058E-210,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - -
0.0 SBWOdeSolver0,00000E00,00 - - - - - - 0,00000E00,000,00000E00,00 - - 0,00000E00,001,66058E-50,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - -
0.0 copasi0,00000E00,00 - - - - - - 0,00000E00,000,00000E00,00 - - 0,00000E00,001,66058E-50,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - -
0.0 edu.kgi.roadRunner0,00000E00,00 - - - - - - 0,00000E00,000,00000E00,00 - - 0,00000E00,001,66058E-50,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - -
0.2 BioUML6,36589E-130,001,50000E30,003,00000E30,003,00000E30,007,20465E-80,005,09750E-110,003,00000E30,003,52250E-80,001,01900E-60,001,50000E30,008,95191E-80,009,62324E-110,001,49742E-60,004,77438E-100,001,34929E-50,001,50000E30,001,77667E-80,001,50000E30,003,81287E-70,003,00000E30,00
0.2 ByoDyn6,36572E-130,001,50000E30,003,00000E30,003,00000E30,007,20494E-80,005,09654E-110,003,00000E30,003,52184E-80,001,01881E-60,001,50000E30,008,95167E-80,009,62363E-110,001,49714E-60,004,77425E-100,001,34934E-50,001,50000E30,001,77633E-80,001,50000E30,003,81214E-70,003,00000E30,00
0.2 MathSBML8,68813E-72100 - - - - - - 1,27497E-640,001,79342E-380,00 - - 1,49460E-484,81,66058E-210,00 - - 0,00000E00,003,53323E-544,22,21470E-600,001,31135E-840,009,11364E-7877,2 - - 1,30070E-494,8 - - 9,96347E-350,00 - -
0.2 Oscill8 Core - - - - - - - - 1,99601E-6584,31,79343E-380,00 - - 1,56925E-480,001,66058E-210,00 - - -5,86580E-641003,68826E-540,003,46736E-6184,3-5,36075E-501004,00466E-770,00 - - 1,36566E-490,00 - - 9,96348E-350,00 - -
0.2 SBWOdeSolver6,36577E-130,00 - - - - - - 7,20485E-80,005,09685E-110,00 - - 3,52206E-80,001,01887E-60,00 - - 8,95175E-80,009,62350E-110,001,49723E-60,004,77429E-100,001,34933E-50,00 - - 1,77644E-80,00 - - 3,81238E-70,00 - -
0.2 copasi6,36572E-130,00 - - - - - - 7,20494E-80,005,09654E-110,00 - - 3,52184E-80,001,01881E-60,00 - - 8,95167E-80,009,62362E-110,001,49714E-60,004,77425E-100,001,34934E-50,00 - - 1,77634E-80,00 - - 3,81215E-70,00 - -
0.2 edu.kgi.roadRunner6,36574E-290,00 - - - - - - 7,20494E-240,005,09654E-270,00 - - 3,52184E-240,001,01881E-2293,9 - - 8,95170E-240,009,62363E-270,001,49714E-220,004,77427E-260,001,34934E-210,00 - - 1,77633E-240,00 - - 3,81214E-230,00 - -
0.4 BioUML1,66466E-120,001,50000E30,003,00000E30,003,00000E30,007,94891E-80,002,37925E-110,003,00000E30,001,66236E-80,004,74523E-70,001,50000E30,002,34093E-70,001,06005E-100,007,11264E-70,001,24849E-90,001,49022E-50,001,50000E30,008,34818E-90,001,50000E30,001,77851E-70,003,00000E30,00
0.4 ByoDyn1,66466E-120,001,50000E30,003,00000E30,003,00000E30,007,94900E-80,002,37896E-110,003,00000E30,001,66216E-80,004,74465E-70,001,50000E30,002,34092E-70,001,06006E-100,007,11180E-70,001,24849E-90,001,49024E-50,001,50000E30,008,34717E-90,001,50000E30,001,77829E-70,003,00000E30,00
0.4 MathSBML3,51131E-71100 - - - - - - 5,15281E-640,003,58685E-380,00 - - 5,97816E-482,41,66058E-210,00 - - 0,00000E00,001,41324E-531,98,95074E-600,005,29994E-840,003,68336E-7793,4 - - 5,20259E-492,4 - - 1,99269E-340,00 - -
0.4 Oscill8 Core - - - - - - - - 1,48794E-6471,13,58685E-380,00 - - 6,12753E-480,001,66058E-210,00 - - -4,42913E-631001,44007E-530,002,58476E-6071,1-2,12075E-491005,58120E-760,00 - - 5,33259E-490,00 - - 1,99270E-340,00 - -
0.4 SBWOdeSolver1,66466E-120,00 - - - - - - 7,94898E-80,002,37902E-110,00 - - 1,66221E-80,004,74478E-70,00 - - 2,34092E-70,001,06005E-100,007,11199E-70,001,24849E-90,001,49023E-50,00 - - 8,34740E-90,00 - - 1,77834E-70,00 - -
0.4 copasi1,66466E-120,00 - - - - - - 7,94900E-80,002,37896E-110,00 - - 1,66217E-80,004,74465E-70,00 - - 2,34092E-70,001,06006E-100,007,11180E-70,001,24849E-90,001,49024E-50,00 - - 8,34718E-90,00 - - 1,77829E-70,00 - -
0.4 edu.kgi.roadRunner1,66466E-280,00 - - - - - - 7,94900E-240,002,37896E-270,00 - - 1,66216E-240,004,74465E-2397,1 - - 2,34092E-230,001,06006E-260,007,11180E-230,001,24849E-250,001,49024E-210,00 - - 8,34717E-250,00 - - 1,77829E-230,00 - -
0.6 BioUML2,72707E-120,001,50000E30,003,00000E30,003,00000E30,007,96544E-80,002,06131E-110,003,00000E30,001,44451E-80,004,10855E-70,001,50000E30,003,83494E-70,001,06208E-100,006,19122E-70,002,04530E-90,001,49347E-50,001,50000E30,007,24568E-90,001,50000E30,001,54058E-70,003,00000E30,00
0.6 ByoDyn2,72707E-120,001,50000E30,003,00000E30,003,00000E30,007,96545E-80,002,06125E-110,003,00000E30,001,44447E-80,004,10844E-70,001,50000E30,003,83494E-70,001,06208E-100,006,19105E-70,002,04530E-90,001,49348E-50,001,50000E30,007,24549E-90,001,50000E30,001,54054E-70,003,00000E30,00
0.6 MathSBML7,92759E-71100 - - - - - - 1,16336E-630,005,38027E-380,00 - - 1,34508E-471,61,66058E-210,00 - - 0,00000E00,003,17976E-531,12,02083E-590,001,19659E-830,008,31609E-7796,9 - - 1,17057E-481,6 - - 2,98904E-340,00 - -
0.6 Oscill8 Core - - - - - - - - 4,90189E-6457,95,38028E-380,00 - - 1,36749E-470,001,66058E-210,00 - - -1,46572E-621003,21377E-530,008,51529E-6057,9-4,74088E-491002,69389E-750,00 - - 1,19008E-480,00 - - 2,98904E-340,00 - -
0.6 SBWOdeSolver2,72707E-120,00 - - - - - - 7,96545E-80,002,06126E-110,00 - - 1,44448E-80,004,10845E-70,00 - - 3,83494E-70,001,06208E-100,006,19108E-70,002,04530E-90,001,49348E-50,00 - - 7,24552E-90,00 - - 1,54054E-70,00 - -
0.6 copasi2,72707E-120,00 - - - - - - 7,96545E-80,002,06125E-110,00 - - 1,44447E-80,004,10844E-70,00 - - 3,83494E-70,001,06208E-100,006,19106E-70,002,04530E-90,001,49348E-50,00 - - 7,24550E-90,00 - - 1,54054E-70,00 - -
0.6 edu.kgi.roadRunner2,72707E-280,00 - - - - - - 7,96545E-240,002,06125E-270,00 - - 1,44447E-240,004,10844E-2397,5 - - 3,83495E-230,001,06208E-260,006,19105E-230,002,04531E-250,001,49348E-210,00 - - 7,24549E-250,00 - - 1,54054E-230,00 - -
0.8 BioUML3,78429E-120,001,50000E30,003,00000E30,003,00000E30,007,90194E-80,002,00952E-110,003,00000E30,001,40877E-80,004,00501E-70,001,50000E30,005,32166E-70,001,05360E-100,006,03936E-70,002,83822E-90,001,48159E-50,001,50000E30,007,06532E-90,001,50000E30,001,50184E-70,003,00000E30,00
0.8 ByoDyn3,78431E-120,001,50000E30,003,00000E30,003,00000E30,007,90195E-80,002,00949E-110,003,00000E30,001,40874E-80,004,00494E-70,001,50000E30,005,32169E-70,001,05360E-100,006,03925E-70,002,83823E-90,001,48159E-50,001,50000E30,007,06519E-90,001,50000E30,001,50182E-70,003,00000E30,00
0.8 MathSBML1,41176E-70100 - - - - - - 2,07175E-630,007,17370E-380,00 - - 2,39124E-471,21,66058E-210,00 - - 0,00000E00,005,65289E-530,653,59875E-590,002,13093E-830,001,48096E-7698,2 - - 2,08102E-481,2 - - 3,98539E-340,00 - -
0.8 Oscill8 Core - - - - - - - - 1,14784E-6344,67,17371E-380,00 - - 2,42112E-470,001,66058E-210,00 - - -3,43986E-621005,68989E-530,001,99396E-5944,6-8,41147E-491008,31062E-750,00 - - 2,10702E-480,00 - - 3,98539E-340,00 - -
0.8 SBWOdeSolver3,78431E-120,00 - - - - - - 7,90195E-80,002,00949E-110,00 - - 1,40874E-80,004,00494E-70,00 - - 5,32169E-70,001,05360E-100,006,03926E-70,002,83823E-90,001,48159E-50,00 - - 7,06520E-90,00 - - 1,50182E-70,00 - -
0.8 copasi3,78431E-120,00 - - - - - - 7,90195E-80,002,00949E-110,00 - - 1,40874E-80,004,00494E-70,00 - - 5,32169E-70,001,05360E-100,006,03926E-70,002,83823E-90,001,48159E-50,00 - - 7,06519E-90,00 - - 1,50182E-70,00 - -
0.8 edu.kgi.roadRunner3,78431E-280,00 - - - - - - 7,90195E-240,002,00949E-270,00 - - 1,40874E-240,004,00494E-2397,6 - - 5,32169E-230,001,05360E-260,006,03925E-230,002,83824E-250,001,48159E-210,00 - - 7,06519E-250,00 - - 1,50182E-230,00 - -
1.0 BioUML4,83203E-120,001,50000E30,003,00000E30,003,00000E30,007,83021E-80,001,98735E-110,003,00000E30,001,39328E-80,003,96078E-70,001,50000E30,006,79504E-70,001,04403E-100,005,97313E-70,003,62402E-90,001,46814E-50,001,50000E30,006,98754E-90,001,50000E30,001,48527E-70,003,00000E30,00
1.0 ByoDyn4,83209E-120,001,50000E30,003,00000E30,003,00000E30,007,83021E-80,001,98734E-110,003,00000E30,001,39327E-80,003,96075E-70,001,50000E30,006,79512E-70,001,04403E-100,005,97309E-70,003,62407E-90,001,46814E-50,001,50000E30,006,98749E-90,001,50000E30,001,48526E-70,003,00000E30,00
1.0 MathSBML2,20815E-70100 - - - - - - 3,24043E-630,008,96712E-380,00 - - 3,73631E-470,991,66058E-210,00 - - 0,00000E00,008,83263E-530,405,62883E-590,003,33300E-830,002,31638E-7698,8 - - 3,25158E-480,99 - - 4,98173E-340,00 - -
1.0 Oscill8 Core - - - - - - - - 2,22542E-6331,38,96713E-380,00 - - 3,77366E-470,001,66058E-210,00 - - -6,67730E-621008,86850E-530,003,86588E-5931,3-1,31103E-481001,99952E-740,00 - - 3,28409E-480,00 - - 4,98174E-340,00 - -
1.0 SBWOdeSolver4,83209E-120,00 - - - - - - 7,83021E-80,001,98733E-110,00 - - 1,39327E-80,003,96075E-70,00 - - 6,79512E-70,001,04403E-100,005,97309E-70,003,62406E-90,001,46814E-50,00 - - 6,98749E-90,00 - - 1,48526E-70,00 - -
1.0 copasi4,83209E-120,00 - - - - - - 7,83021E-80,001,98734E-110,00 - - 1,39327E-80,003,96075E-70,00 - - 6,79512E-70,001,04403E-100,005,97310E-70,003,62407E-90,001,46814E-50,00 - - 6,98750E-90,00 - - 1,48526E-70,00 - -
1.0 edu.kgi.roadRunner4,83209E-280,00 - - - - - - 7,83021E-240,001,98734E-270,00 - - 1,39327E-240,003,96075E-2397,6 - - 6,79513E-230,001,04403E-260,005,97309E-230,003,62407E-250,001,46814E-210,00 - - 6,98749E-250,00 - - 1,48526E-230,00 - -
1.2 BioUML5,86999E-120,001,50000E30,003,00000E30,003,00000E30,007,75818E-80,001,96862E-110,003,00000E30,001,38016E-80,003,92344E-70,001,50000E30,008,25467E-70,001,03443E-100,005,91688E-70,004,40249E-90,001,45463E-50,001,50000E30,006,92170E-90,001,50000E30,001,47127E-70,003,00000E30,00
1.2 ByoDyn5,87001E-120,001,50000E30,003,00000E30,003,00000E30,007,75818E-80,001,96862E-110,003,00000E30,001,38016E-80,003,92344E-70,001,50000E30,008,25470E-70,001,03443E-100,005,91688E-70,004,40250E-90,001,45463E-50,001,50000E30,006,92170E-90,001,50000E30,001,47127E-70,003,00000E30,00
1.2 MathSBML3,35495E-70100 - - - - - - 4,92336E-630,001,07605E-370,00 - - 5,38028E-470,831,66058E-210,00 - - 9,15298E-950,001,27190E-520,248,55217E-590,001,32554E-810,009,21228E-7577,6 - - 4,68228E-480,83 - - 5,97808E-340,00 - -
1.2 Oscill8 Core - - - - - - - - 3,82664E-6322,31,07606E-370,00 - - 5,42511E-470,001,66058E-210,00 - - -1,15005E-611001,27492E-520,006,64742E-5922,3-1,89427E-481004,10580E-740,00 - - 4,72129E-480,00 - - 5,97809E-340,00 - -
1.2 SBWOdeSolver5,87000E-120,00 - - - - - - 7,75818E-80,001,96862E-110,00 - - 1,38016E-80,003,92344E-70,00 - - 8,25469E-70,001,03443E-100,005,91688E-70,004,40250E-90,001,45463E-50,00 - - 6,92169E-90,00 - - 1,47127E-70,00 - -
1.2 copasi5,87001E-120,00 - - - - - - 7,75818E-80,001,96862E-110,00 - - 1,38016E-80,003,92344E-70,00 - - 8,25470E-70,001,03443E-100,005,91687E-70,004,40250E-90,001,45463E-50,00 - - 6,92169E-90,00 - - 1,47127E-70,00 - -
1.2 edu.kgi.roadRunner5,87001E-280,00 - - - - - - 7,75818E-240,001,96862E-270,00 - - 1,38016E-240,003,92344E-2397,6 - - 8,25470E-230,001,03443E-260,005,91688E-230,004,40251E-250,001,45463E-210,00 - - 6,92170E-250,00 - - 1,47127E-230,00 - -
1.4 BioUML6,89785E-120,001,50000E30,003,00000E30,003,00000E30,007,68673E-80,001,95044E-110,003,00000E30,001,36741E-80,003,88721E-70,001,50000E30,009,70010E-70,001,02490E-100,005,86224E-70,005,17338E-90,001,44124E-50,001,50000E30,006,85778E-90,001,50000E30,001,45768E-70,003,00000E30,00
1.4 ByoDyn6,89811E-120,001,50000E30,003,00000E30,003,00000E30,007,68671E-80,001,95043E-110,003,00000E30,001,36741E-80,003,88720E-70,001,50000E30,009,70046E-70,001,02490E-100,005,86223E-70,005,17358E-90,001,44123E-50,001,50000E30,006,85776E-90,001,50000E30,001,45768E-70,003,00000E30,00
1.4 MathSBML5,03242E-70100 - - - - - - 7,38502E-630,001,25540E-370,00 - - 7,32316E-470,711,66058E-210,00 - - 3,69926E-940,001,73119E-520,121,28282E-580,005,22859E-810,003,63378E-7451,9 - - 6,37310E-480,71 - - 6,97443E-340,00 - -
1.4 Oscill8 Core - - - - - - - - 6,05517E-6318,01,25540E-370,00 - - 7,37546E-470,001,66058E-210,00 - - -1,82439E-611001,73322E-520,001,05187E-5818,0-2,58421E-481007,55332E-740,00 - - 6,41862E-480,00 - - 6,97444E-340,00 - -
1.4 SBWOdeSolver6,89810E-120,00 - - - - - - 7,68671E-80,001,95043E-110,00 - - 1,36741E-80,003,88720E-70,00 - - 9,70046E-70,001,02490E-100,005,86223E-70,005,17358E-90,001,44123E-50,00 - - 6,85776E-90,00 - - 1,45768E-70,00 - -
1.4 copasi6,89811E-120,00 - - - - - - 7,68671E-80,001,95043E-110,00 - - 1,36741E-80,003,88720E-70,00 - - 9,70046E-70,001,02490E-100,005,86223E-70,005,17358E-90,001,44123E-50,00 - - 6,85776E-90,00 - - 1,45768E-70,00 - -
1.4 edu.kgi.roadRunner6,89811E-280,00 - - - - - - 7,68671E-240,001,95043E-270,00 - - 1,36741E-240,003,88720E-2397,7 - - 9,70046E-230,001,02490E-260,005,86223E-230,005,17358E-250,001,44123E-210,00 - - 6,85776E-250,00 - - 1,45768E-230,00 - -
1.6 BioUML7,91529E-120,001,50000E30,003,00000E30,003,00000E30,007,61599E-80,001,93248E-110,003,00000E30,001,35482E-80,003,85142E-70,001,50000E30,001,11309E-60,001,01547E-100,005,80827E-70,005,93646E-90,001,42797E-50,001,50000E30,006,79465E-90,001,50000E30,001,44426E-70,003,00000E30,00
1.6 ByoDyn7,91648E-120,001,50000E30,003,00000E30,003,00000E30,007,61591E-80,001,93246E-110,003,00000E30,001,35481E-80,003,85138E-70,001,50000E30,001,11325E-6