Test: BIOMD0000000007.xml - Ok

test: BIOMD0000000007.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000007.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6614787694.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: SPF  UbE  UbE2B  Rum1Total  PG2R  R  G2R  Cdc25  UbEB  UbE2  G2K  IE  k6  Cdc25B  Wee1B  k25  IEB  kp  k2  PG2  kwee  G1R  Cig2Total  Mass  MPF  Cdc13Total  G1K  Wee1 
Simulators: BioUML  ByoDyn  MathSBML  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation SPF UbE UbE2B Rum1Total PG2R R G2R Cdc25 UbEB UbE2 G2K IE k6 Cdc25B Wee1B k25 IEB kp k2 PG2 kwee G1R Cig2Total Mass MPF Cdc13Total G1K Wee1
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,001,00000E00,001,00000E00,004,00000E-10,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,75000E-20,001,00000E00,001,00000E00,002,50000E-20,001,00000E00,003,25000E00,002,50000E-10,000,00000E00,003,50000E-20,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,001,00000E00,000,00000E01004,00000E-10,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,75000E-20,000,00000E01000,00000E01002,50000E-20,000,00000E01003,25000E00,002,50000E-10,000,00000E00,003,50000E-20,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,001,00000E00,001,00000E00,004,00000E-10,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 1,00000E00,001,00000E00,00 - - 1,00000E00,00 - - - - 0,00000E00,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver - - 1,00000E00,00 - - - - 0,00000E00,004,00000E-10,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - - - - - - - - - - - - - - 0,00000E00,00 - - 0,00000E00,00 - - 1,00000E00,00 - - - - 0,00000E00,000,00000E00,00
0.0 copasi0,00000E00,001,00000E00,001,00000E00,004,00000E-10,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 1,00000E00,001,00000E00,00 - - 1,00000E00,00 - - - - 0,00000E00,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,001,00000E00,00 - - 4,00000E-10,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - - - - - - - - - - - - - - 0,00000E00,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML4,47397E-40,009,80200E-10,009,99186E-10,004,03447E-10,002,31722E-60,004,00811E-10,002,52620E-30,004,87686E-50,001,97999E-20,008,14256E-40,003,86949E-40,001,23873E-50,004,35764E-20,009,99951E-10,009,54655E-10,002,50232E-20,009,99988E-10,003,25000E00,002,45199E-10,004,65603E-70,004,92838E-20,001,07164E-40,003,48864E-40,001,00099E00,003,86972E-40,002,91593E-30,002,41700E-40,004,53452E-20,00
0.2 ByoDyn4,47397E-40,009,80200E-10,000,00000E01004,03447E-10,002,31722E-60,004,00811E-10,002,52620E-30,004,87686E-50,000,00000E01008,14256E-40,003,86949E-40,001,23873E-50,004,35764E-20,000,00000E01000,00000E01002,50232E-20,000,00000E01003,25000E00,002,45199E-10,004,65603E-70,004,92838E-20,001,07164E-40,003,48864E-40,001,00099E00,003,86972E-40,002,91593E-30,002,41700E-40,004,53452E-20,00
0.2 MathSBML4,47396E-40,009,80200E-10,009,99186E-10,004,03447E-10,002,31722E-60,004,00811E-10,002,52620E-30,004,87686E-50,001,97999E-20,008,14255E-40,003,86948E-40,001,23873E-50,00 - - 9,99951E-10,009,54655E-10,00 - - 9,99988E-10,00 - - - - 4,65602E-70,00 - - 1,07164E-40,003,48864E-40,00 - - 3,86971E-40,002,91593E-30,002,41700E-40,004,53452E-20,00
0.2 SBWOdeSolver - - 9,80200E-10,00 - - - - 2,31725E-60,004,00811E-10,002,52621E-30,004,87682E-50,00 - - 8,14244E-40,003,86948E-40,001,23871E-50,00 - - - - - - - - - - - - - - 4,65603E-70,00 - - 1,07167E-40,00 - - 1,00099E00,00 - - - - 2,41697E-40,004,53452E-20,00
0.2 copasi4,47397E-40,009,80200E-10,009,99186E-10,004,03447E-10,002,31722E-60,004,00811E-10,002,52620E-30,004,87686E-50,001,97999E-20,008,14256E-40,003,86949E-40,001,23873E-50,00 - - 9,99951E-10,009,54655E-10,00 - - 9,99988E-10,00 - - - - 4,65603E-70,00 - - 1,07164E-40,003,48864E-40,00 - - 3,86972E-40,002,91593E-30,002,41700E-40,004,53452E-20,00
0.2 edu.kgi.roadRunner4,47397E-40,009,80200E-10,00 - - 4,03447E-10,002,31722E-60,004,00811E-10,002,52620E-30,004,87686E-50,00 - - 8,14256E-40,003,86949E-40,001,23873E-50,00 - - - - - - - - - - - - - - 4,65603E-70,00 - - 1,07164E-40,003,48864E-40,00 - - 3,86972E-40,002,91593E-30,002,41700E-40,004,53452E-20,00
0.4 BioUML4,95356E-40,009,60405E-10,009,98831E-10,004,06699E-10,006,32575E-60,004,01098E-10,005,25480E-30,008,64806E-50,003,95954E-20,001,16896E-30,004,06237E-40,001,53844E-50,004,62234E-20,009,99914E-10,009,09532E-10,002,50411E-20,009,99985E-10,003,25000E00,002,40398E-10,006,58938E-70,006,34974E-20,003,39760E-40,006,96102E-40,001,00198E00,004,06270E-40,005,66803E-30,003,56342E-40,009,04680E-20,00
0.4 ByoDyn4,95356E-40,009,60405E-10,000,00000E01004,06699E-10,006,32575E-60,004,01098E-10,005,25480E-30,008,64806E-50,000,00000E01001,16896E-30,004,06237E-40,001,53844E-50,004,62234E-20,000,00000E01000,00000E01002,50411E-20,000,00000E01003,25000E00,002,40398E-10,006,58938E-70,006,34974E-20,003,39760E-40,006,96102E-40,001,00198E00,004,06270E-40,005,66803E-30,003,56342E-40,009,04680E-20,00
0.4 MathSBML4,95353E-40,009,60405E-10,009,98831E-10,004,06699E-10,006,32576E-60,004,01098E-10,005,25481E-30,008,64807E-50,003,95954E-20,001,16897E-30,004,06234E-40,001,53845E-50,00 - - 9,99914E-10,009,09532E-10,00 - - 9,99985E-10,00 - - - - 6,58931E-70,00 - - 3,39760E-40,006,96102E-40,00 - - 4,06267E-40,005,66803E-30,003,56342E-40,009,04680E-20,00
0.4 SBWOdeSolver - - 9,60405E-10,00 - - - - 6,32581E-60,004,01098E-10,005,25480E-30,008,64801E-50,00 - - 1,16895E-30,004,06237E-40,001,53843E-50,00 - - - - - - - - - - - - - - 6,58939E-70,00 - - 3,39762E-40,00 - - 1,00198E00,00 - - - - 3,56340E-40,009,04680E-20,00
0.4 copasi4,95356E-40,009,60405E-10,009,98831E-10,004,06699E-10,006,32575E-60,004,01098E-10,005,25480E-30,008,64806E-50,003,95954E-20,001,16896E-30,004,06237E-40,001,53844E-50,00 - - 9,99914E-10,009,09532E-10,00 - - 9,99985E-10,00 - - - - 6,58938E-70,00 - - 3,39760E-40,006,96102E-40,00 - - 4,06270E-40,005,66803E-30,003,56342E-40,009,04680E-20,00
0.4 edu.kgi.roadRunner4,95356E-40,009,60405E-10,00 - - 4,06699E-10,006,32575E-60,004,01098E-10,005,25480E-30,008,64806E-50,00 - - 1,16896E-30,004,06237E-40,001,53844E-50,00 - - - - - - - - - - - - - - 6,58938E-70,00 - - 3,39760E-40,006,96102E-40,00 - - 4,06270E-40,005,66803E-30,003,56342E-40,009,04680E-20,00
0.6 BioUML5,28793E-40,009,40613E-10,009,98679E-10,004,09806E-10,001,14363E-50,004,01336E-10,007,83362E-30,001,12039E-40,005,93867E-20,001,32056E-30,004,24362E-40,001,64273E-50,004,73547E-20,009,99888E-10,008,64642E-10,002,50532E-20,009,99984E-10,003,25000E00,002,35599E-10,008,69811E-70,007,76377E-20,006,24900E-40,001,04245E-30,001,00297E00,004,24406E-40,008,27029E-30,004,17549E-40,001,35358E-10,00
0.6 ByoDyn5,28793E-40,009,40613E-10,000,00000E01004,09806E-10,001,14363E-50,004,01336E-10,007,83362E-30,001,12039E-40,000,00000E01001,32056E-30,004,24362E-40,001,64273E-50,004,73547E-20,000,00000E01000,00000E01002,50532E-20,000,00000E01003,25000E00,002,35599E-10,008,69811E-70,007,76377E-20,006,24900E-40,001,04245E-30,001,00297E00,004,24406E-40,008,27029E-30,004,17549E-40,001,35358E-10,00
0.6 MathSBML5,28793E-40,009,40613E-10,009,98679E-10,004,09806E-10,001,14363E-50,004,01336E-10,007,83362E-30,001,12039E-40,005,93867E-20,001,32056E-30,004,24362E-40,001,64273E-50,00 - - 9,99888E-10,008,64642E-10,00 - - 9,99984E-10,00 - - - - 8,69803E-70,00 - - 6,24901E-40,001,04245E-30,00 - - 4,24406E-40,008,27029E-30,004,17548E-40,001,35358E-10,00
0.6 SBWOdeSolver - - 9,40613E-10,00 - - - - 1,14364E-50,004,01336E-10,007,83362E-30,001,12039E-40,00 - - 1,32056E-30,004,24362E-40,001,64273E-50,00 - - - - - - - - - - - - - - 8,69813E-70,00 - - 6,24902E-40,00 - - 1,00297E00,00 - - - - 4,17547E-40,001,35358E-10,00
0.6 copasi5,28793E-40,009,40613E-10,009,98679E-10,004,09806E-10,001,14363E-50,004,01336E-10,007,83362E-30,001,12039E-40,005,93867E-20,001,32056E-30,004,24362E-40,001,64273E-50,00 - - 9,99888E-10,008,64642E-10,00 - - 9,99984E-10,00 - - - - 8,69811E-70,00 - - 6,24901E-40,001,04245E-30,00 - - 4,24406E-40,008,27029E-30,004,17548E-40,001,35358E-10,00
0.6 edu.kgi.roadRunner5,28793E-40,009,40613E-10,00 - - 4,09806E-10,001,14363E-50,004,01336E-10,007,83362E-30,001,12039E-40,00 - - 1,32056E-30,004,24362E-40,001,64273E-50,00 - - - - - - - - - - - - - - 8,69811E-70,00 - - 6,24900E-40,001,04245E-30,00 - - 4,24406E-40,008,27029E-30,004,17549E-40,001,35358E-10,00
0.8 BioUML5,55634E-40,009,20827E-10,009,98592E-10,004,12779E-10,001,76756E-50,004,01554E-10,001,02757E-20,001,30077E-40,007,91735E-20,001,40766E-30,004,41499E-40,001,71694E-50,004,80046E-20,009,99870E-10,008,20002E-10,002,50618E-20,009,99983E-10,003,25000E00,002,30800E-10,001,09826E-60,009,16992E-20,009,31949E-40,001,38827E-30,001,00397E00,004,41554E-40,001,07360E-20,004,56320E-40,001,79998E-10,00
0.8 ByoDyn5,55634E-40,009,20827E-10,000,00000E01004,12779E-10,001,76756E-50,004,01554E-10,001,02757E-20,001,30077E-40,000,00000E01001,40766E-30,004,41499E-40,001,71694E-50,004,80046E-20,000,00000E01000,00000E01002,50618E-20,000,00000E01003,25000E00,002,30800E-10,001,09826E-60,009,16992E-20,009,31949E-40,001,38827E-30,001,00397E00,004,41554E-40,001,07360E-20,004,56320E-40,001,79998E-10,00
0.8 MathSBML5,55637E-40,009,20827E-10,009,98592E-10,004,12779E-10,001,76758E-50,004,01554E-10,001,02757E-20,001,30077E-40,007,91735E-20,001,40766E-30,004,41502E-40,001,71693E-50,00 - - 9,99870E-10,008,20002E-10,00 - - 9,99983E-10,00 - - - - 1,09812E-60,00 - - 9,31949E-40,001,38827E-30,00 - - 4,41557E-40,001,07360E-20,004,56320E-40,001,79998E-10,00
0.8 SBWOdeSolver - - 9,20827E-10,00 - - - - 1,76757E-50,004,01554E-10,001,02757E-20,001,30077E-40,00 - - 1,40766E-30,004,41499E-40,001,71694E-50,00 - - - - - - - - - - - - - - 1,09826E-60,00 - - 9,31950E-40,00 - - 1,00397E00,00 - - - - 4,56319E-40,001,79998E-10,00
0.8 copasi5,55634E-40,009,20827E-10,009,98592E-10,004,12779E-10,001,76756E-50,004,01554E-10,001,02757E-20,001,30077E-40,007,91735E-20,001,40766E-30,004,41499E-40,001,71694E-50,00 - - 9,99870E-10,008,20002E-10,00 - - 9,99983E-10,00 - - - - 1,09826E-60,00 - - 9,31949E-40,001,38827E-30,00 - - 4,41554E-40,001,07360E-20,004,56320E-40,001,79998E-10,00
0.8 edu.kgi.roadRunner5,55634E-40,009,20827E-10,00 - - 4,12779E-10,001,76756E-50,004,01554E-10,001,02757E-20,001,30077E-40,00 - - 1,40766E-30,004,41499E-40,001,71694E-50,00 - - - - - - - - - - - - - - 1,09826E-60,00 - - 9,31949E-40,001,38827E-30,00 - - 4,41554E-40,001,07360E-20,004,56320E-40,001,79998E-10,00
1.0 BioUML5,79212E-40,009,01044E-10,009,98527E-10,004,15626E-10,002,50648E-50,004,01760E-10,001,25930E-20,001,43415E-40,009,89556E-20,001,47269E-30,004,57728E-40,001,78385E-50,004,84900E-20,009,99857E-10,007,75633E-10,002,50681E-20,009,99982E-10,003,25000E00,002,26003E-10,001,34342E-60,001,05676E-10,001,24805E-30,001,73372E-30,001,00496E00,004,57795E-40,001,30771E-20,004,85668E-40,002,24367E-10,00
1.0 ByoDyn5,79212E-40,009,01044E-10,000,00000E01004,15626E-10,002,50648E-50,004,01760E-10,001,25930E-20,001,43415E-40,000,00000E01001,47269E-30,004,57728E-40,001,78385E-50,004,84900E-20,000,00000E01000,00000E01002,50681E-20,000,00000E01003,25000E00,002,26003E-10,001,34342E-60,001,05676E-10,001,24805E-30,001,73372E-30,001,00496E00,004,57795E-40,001,30771E-20,004,85668E-40,002,24367E-10,00
1.0 MathSBML5,79212E-40,009,01044E-10,009,98527E-10,004,15626E-10,002,50648E-50,004,01760E-10,001,25930E-20,001,43416E-40,009,89556E-20,001,47269E-30,004,57728E-40,001,78385E-50,00 - - 9,99857E-10,007,75633E-10,00 - - 9,99982E-10,00 - - - - 1,34343E-60,00 - - 1,24805E-30,001,73372E-30,00 - - 4,57795E-40,001,30771E-20,004,85669E-40,002,24367E-10,00
1.0 SBWOdeSolver - - 9,01044E-10,00 - - - - 2,50650E-50,004,01760E-10,001,25930E-20,001,43415E-40,00 - - 1,47269E-30,004,57728E-40,001,78385E-50,00 - - - - - - - - - - - - - - 1,34342E-60,00 - - 1,24805E-30,00 - - 1,00496E00,00 - - - - 4,85668E-40,002,24367E-10,00
1.0 copasi5,79213E-40,009,01044E-10,009,98527E-10,004,15626E-10,002,50648E-50,004,01760E-10,001,25930E-20,001,43416E-40,009,89556E-20,001,47269E-30,004,57728E-40,001,78385E-50,00 - - 9,99857E-10,007,75633E-10,00 - - 9,99982E-10,00 - - - - 1,34342E-60,00 - - 1,24805E-30,001,73372E-30,00 - - 4,57795E-40,001,30771E-20,004,85669E-40,002,24367E-10,00
1.0 edu.kgi.roadRunner5,79212E-40,009,01044E-10,00 - - 4,15626E-10,002,50648E-50,004,01760E-10,001,25930E-20,001,43415E-40,00 - - 1,47269E-30,004,57728E-40,001,78385E-50,00 - - - - - - - - - - - - - - 1,34342E-60,00 - - 1,24805E-30,001,73372E-30,00 - - 4,57795E-40,001,30771E-20,004,85668E-40,002,24367E-10,00
1.2 BioUML6,00973E-40,008,81267E-10,009,98471E-10,004,18354E-10,003,36198E-50,004,01956E-10,001,47966E-20,001,53777E-40,001,18733E-10,001,52893E-30,004,73130E-40,001,84684E-50,004,89096E-20,009,99846E-10,007,31558E-10,002,50730E-20,009,99982E-10,003,25000E00,002,21207E-10,001,60450E-60,001,19559E-10,001,56781E-30,002,07886E-30,001,00596E00,004,73211E-40,001,53049E-20,005,11051E-40,002,68442E-10,00
1.2 ByoDyn6,00973E-40,008,81267E-10,000,00000E01004,18354E-10,003,36198E-50,004,01956E-10,001,47966E-20,001,53777E-40,000,00000E01001,52893E-30,004,73130E-40,001,84684E-50,004,89096E-20,000,00000E01000,00000E01002,50730E-20,000,00000E01003,25000E00,002,21207E-10,001,60450E-60,001,19559E-10,001,56781E-30,002,07886E-30,001,00596E00,004,73211E-40,001,53049E-20,005,11051E-40,002,68442E-10,00
1.2 MathSBML6,00973E-40,008,81267E-10,009,98471E-10,004,18354E-10,003,36198E-50,004,01956E-10,001,47966E-20,001,53777E-40,001,18733E-10,001,52893E-30,004,73131E-40,001,84684E-50,00 - - 9,99846E-10,007,31558E-10,00 - - 9,99982E-10,00 - - - - 1,60449E-60,00 - - 1,56781E-30,002,07886E-30,00 - - 4,73211E-40,001,53049E-20,005,11050E-40,002,68442E-10,00
1.2 SBWOdeSolver - - 8,81267E-10,00 - - - - 3,36200E-50,004,01956E-10,001,47966E-20,001,53777E-40,00 - - 1,52893E-30,004,73130E-40,001,84684E-50,00 - - - - - - - - - - - - - - 1,60450E-60,00 - - 1,56781E-30,00 - - 1,00596E00,00 - - - - 5,11051E-40,002,68442E-10,00
1.2 copasi6,00973E-40,008,81267E-10,009,98471E-10,004,18354E-10,003,36198E-50,004,01956E-10,00