Test: BIOMD0000000008.xml - Ok

test: BIOMD0000000008.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000008.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6614879888.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: V3  C  V1  M  Y  X  Z 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation V3 C V1 M Y X Z
var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 MathSBML - - 0,00000E00,00 - - 0,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 SBWOdeSolver - - 0,00000E00,00 - - 0,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 VCell - - 0,00000E00,00 - - 0,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 copasi - - 0,00000E00,00 - - 0,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 edu.kgi.roadRunner - - 0,00000E00,00 - - 0,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,001,00000E00,00
0.2 BioUML1,68041E-30,003,07170E-20,006,96600E-20,005,60138E-30,001,03998E00,009,38370E-50,009,88822E-10,00
0.2 ByoDyn1,68041E-30,003,07170E-20,006,96600E-20,005,60138E-30,001,03998E00,009,38370E-50,009,88822E-10,00
0.2 MathSBML - - 3,07170E-20,00 - - 5,60139E-30,001,03998E00,009,38383E-50,009,88822E-10,00
0.2 SBToolbox21,67995E-30,003,07166E-20,006,96601E-20,005,59996E-30,001,03996E00,009,42349E-50,419,88821E-10,00
0.2 SBWOdeSolver - - 3,07170E-20,00 - - 5,60155E-30,001,03998E00,009,38480E-50,009,88822E-10,00
0.2 VCell - - 3,07170E-20,00 - - 5,60138E-30,001,03998E00,009,38370E-50,009,88822E-10,00
0.2 copasi - - 3,07170E-20,00 - - 5,60138E-30,001,03998E00,009,38369E-50,009,88822E-10,00
0.2 edu.kgi.roadRunner - - 3,07170E-20,00 - - 5,60138E-30,001,03998E00,009,38370E-50,009,88822E-10,00
0.2 jsim1,68041E-30,003,07170E-20,006,96600E-20,005,60138E-30,001,03998E00,009,38370E-50,009,88822E-10,00
0.4 BioUML5,53020E-30,006,08428E-20,001,26460E-10,001,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.4 ByoDyn5,53020E-30,006,08428E-20,001,26460E-10,001,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.4 MathSBML - - 6,08428E-20,00 - - 1,84340E-20,001,07913E00,006,12032E-40,009,78098E-10,00
0.4 SBToolbox25,52675E-30,006,08433E-20,001,26457E-10,001,84228E-20,001,07912E00,006,12919E-40,149,78101E-10,00
0.4 SBWOdeSolver - - 6,08428E-20,00 - - 1,84342E-20,001,07913E00,006,12060E-40,009,78098E-10,00
0.4 VCell - - 6,08428E-20,00 - - 1,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.4 copasi - - 6,08428E-20,00 - - 1,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.4 edu.kgi.roadRunner - - 6,08428E-20,00 - - 1,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.4 jsim5,53020E-30,006,08428E-20,001,26460E-10,001,84340E-20,001,07913E00,006,12031E-40,009,78098E-10,00
0.6 BioUML1,05954E-20,009,03222E-20,001,73553E-10,003,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 ByoDyn1,05954E-20,009,03222E-20,001,73553E-10,003,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 MathSBML - - 9,03222E-20,00 - - 3,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 SBToolbox21,05885E-20,009,03225E-20,001,73551E-10,003,52940E-20,001,11739E00,001,72226E-30,009,67840E-10,00
0.6 SBWOdeSolver - - 9,03221E-20,00 - - 3,53180E-20,001,11743E00,001,72195E-30,009,67838E-10,00
0.6 VCell - - 9,03222E-20,00 - - 3,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 copasi - - 9,03222E-20,00 - - 3,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 edu.kgi.roadRunner - - 9,03222E-20,00 - - 3,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.6 jsim1,05954E-20,009,03222E-20,001,73553E-10,003,53178E-20,001,11743E00,001,72191E-30,009,67838E-10,00
0.8 BioUML1,64906E-20,001,19090E-10,002,13122E-10,005,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 ByoDyn1,64906E-20,001,19090E-10,002,13122E-10,005,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 MathSBML - - 1,19090E-10,00 - - 5,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 SBToolbox21,64791E-20,001,19087E-10,002,13124E-10,005,49309E-20,001,15486E00,003,47106E-30,009,58048E-10,00
0.8 SBWOdeSolver - - 1,19090E-10,00 - - 5,49690E-20,001,15489E00,003,47260E-30,009,58052E-10,00
0.8 VCell - - 1,19090E-10,00 - - 5,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 copasi - - 1,19090E-10,00 - - 5,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 edu.kgi.roadRunner - - 1,19090E-10,00 - - 5,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
0.8 jsim1,64906E-20,001,19090E-10,002,13122E-10,005,49688E-20,001,15489E00,003,47254E-30,009,58052E-10,00
1.0 BioUML2,30406E-20,001,47079E-10,002,46733E-10,007,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 ByoDyn2,30406E-20,001,47079E-10,002,46733E-10,007,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 MathSBML - - 1,47079E-10,00 - - 7,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 SBToolbox22,30238E-20,001,47082E-10,002,46734E-10,007,67463E-20,001,19152E00,005,86895E-30,009,48745E-10,00
1.0 SBWOdeSolver - - 1,47079E-10,00 - - 7,68024E-20,001,19151E00,005,87385E-30,009,48747E-10,00
1.0 VCell - - 1,47079E-10,00 - - 7,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 copasi - - 1,47079E-10,00 - - 7,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 edu.kgi.roadRunner - - 1,47079E-10,00 - - 7,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.0 jsim2,30406E-20,001,47079E-10,002,46734E-10,007,68022E-20,001,19151E00,005,87378E-30,009,48747E-10,00
1.2 BioUML3,01469E-20,001,74225E-10,002,75542E-10,001,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 ByoDyn3,01469E-20,001,74225E-10,002,75542E-10,001,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 MathSBML - - 1,74225E-10,00 - - 1,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 SBToolbox23,01240E-20,001,74229E-10,002,75539E-10,001,00413E-10,001,22728E00,008,91622E-30,119,39922E-10,00
1.2 SBWOdeSolver - - 1,74225E-10,00 - - 1,00490E-10,001,22729E00,008,92612E-30,009,39927E-10,00
1.2 VCell - - 1,74225E-10,00 - - 1,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 copasi - - 1,74225E-10,00 - - 1,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 edu.kgi.roadRunner - - 1,74225E-10,00 - - 1,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.2 jsim3,01469E-20,001,74225E-10,002,75542E-10,001,00490E-10,001,22729E00,008,92604E-30,009,39927E-10,00
1.4 BioUML3,77406E-20,002,00465E-10,003,00418E-10,001,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 ByoDyn3,77406E-20,002,00465E-10,003,00418E-10,001,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 MathSBML - - 2,00465E-10,00 - - 1,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 SBToolbox23,77113E-20,002,00469E-10,003,00418E-10,001,25707E-10,001,26226E00,001,26149E-20,139,31587E-10,00
1.4 SBWOdeSolver - - 2,00465E-10,00 - - 1,25802E-10,001,26224E00,001,26314E-20,009,31594E-10,00
1.4 VCell - - 2,00465E-10,00 - - 1,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 copasi - - 2,00465E-10,00 - - 1,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 edu.kgi.roadRunner - - 2,00465E-10,00 - - 1,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.4 jsim3,77406E-20,002,00465E-10,003,00418E-10,001,25802E-10,001,26224E00,001,26313E-20,009,31594E-10,00
1.6 BioUML4,57648E-20,002,25739E-10,003,22031E-10,001,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 ByoDyn4,57648E-20,002,25739E-10,003,22031E-10,001,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 MathSBML - - 2,25739E-10,00 - - 1,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 SBToolbox24,57302E-20,002,25742E-10,003,22028E-10,001,52431E-10,001,29634E00,001,69726E-20,149,23741E-10,00
1.6 SBWOdeSolver - - 2,25739E-10,00 - - 1,52550E-10,001,29637E00,001,69972E-20,009,23747E-10,00
1.6 VCell - - 2,25739E-10,00 - - 1,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 copasi - - 2,25739E-10,00 - - 1,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 edu.kgi.roadRunner - - 2,25739E-10,00 - - 1,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.6 jsim4,57648E-20,002,25739E-10,003,22031E-10,001,52549E-10,001,29637E00,001,69971E-20,009,23747E-10,00
1.8 BioUML5,41678E-20,002,49987E-10,003,40899E-10,001,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 ByoDyn5,41678E-20,002,49987E-10,003,40899E-10,001,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 MathSBML - - 2,49987E-10,00 - - 1,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 SBToolbox25,41290E-20,002,49988E-10,003,40902E-10,001,80433E-10,001,32969E00,002,20036E-20,159,16375E-10,00
1.8 SBWOdeSolver - - 2,49987E-10,00 - - 1,80560E-10,001,32968E00,002,20369E-20,009,16384E-10,00
1.8 VCell - - 2,49987E-10,00 - - 1,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 copasi - - 2,49987E-10,00 - - 1,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 edu.kgi.roadRunner - - 2,49987E-10,00 - - 1,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
1.8 jsim5,41678E-20,002,49987E-10,003,40899E-10,001,80559E-10,001,32968E00,002,20368E-20,009,16384E-10,00
2.0 BioUML6,29003E-20,002,73151E-10,003,57434E-10,002,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 ByoDyn6,29003E-20,002,73151E-10,003,57434E-10,002,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 MathSBML - - 2,73151E-10,00 - - 2,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 SBToolbox26,28592E-20,002,73162E-10,003,57436E-10,002,09534E-10,001,36218E00,002,77244E-20,169,09486E-10,00
2.0 SBWOdeSolver - - 2,73151E-10,00 - - 2,09669E-10,001,36219E00,002,77698E-20,009,09499E-10,00
2.0 VCell - - 2,73151E-10,00 - - 2,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 copasi - - 2,73151E-10,00 - - 2,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 edu.kgi.roadRunner - - 2,73151E-10,00 - - 2,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.0 jsim6,29003E-20,002,73151E-10,003,57434E-10,002,09668E-10,001,36219E00,002,77696E-20,009,09499E-10,00
2.2 BioUML7,19142E-20,002,95175E-10,003,71960E-10,002,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 ByoDyn7,19142E-20,002,95175E-10,003,71960E-10,002,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 MathSBML - - 2,95175E-10,00 - - 2,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 SBToolbox27,18695E-20,002,95185E-10,003,71968E-10,002,39566E-10,001,39395E00,003,41632E-20,169,03068E-10,00
2.2 SBWOdeSolver - - 2,95175E-10,00 - - 2,39715E-10,001,39392E00,003,42192E-20,009,03086E-10,00
2.2 VCell - - 2,95175E-10,00 - - 2,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 copasi - - 2,95175E-10,00 - - 2,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 edu.kgi.roadRunner - - 2,95175E-10,00 - - 2,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.2 jsim7,19142E-20,002,95175E-10,003,71960E-10,002,39714E-10,001,39392E00,003,42190E-20,009,03086E-10,00
2.4 BioUML8,11623E-20,003,16000E-10,003,84740E-10,002,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.4 ByoDyn8,11623E-20,003,16000E-10,003,84740E-10,002,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.4 MathSBML - - 3,16000E-10,00 - - 2,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.4 SBToolbox28,11139E-20,003,16008E-10,003,84746E-10,002,70378E-10,001,42492E00,004,13423E-20,178,97117E-10,00
2.4 SBWOdeSolver - - 3,16000E-10,00 - - 2,70542E-10,001,42487E00,004,14119E-20,008,97134E-10,00
2.4 VCell - - 3,16000E-10,00 - - 2,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.4 copasi - - 3,16000E-10,00 - - 2,70541E-10,001,42487E00,004,14115E-20,008,97134E-10,00
2.4 edu.kgi.roadRunner - - 3,16000E-10,00 - - 2,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.4 jsim8,11623E-20,003,16000E-10,003,84740E-10,002,70541E-10,001,42487E00,004,14116E-20,008,97134E-10,00
2.6 BioUML9,05976E-20,003,35570E-10,003,95987E-10,003,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.6 ByoDyn9,05976E-20,003,35570E-10,003,95987E-10,003,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.6 MathSBML - - 3,35570E-10,00 - - 3,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.6 SBToolbox29,05502E-20,003,35586E-10,003,95995E-10,003,01837E-10,001,45511E00,004,92906E-20,178,91610E-10,00
2.6 SBWOdeSolver - - 3,35570E-10,00 - - 3,01993E-10,001,45508E00,004,93759E-20,008,91632E-10,00
2.6 VCell - - 3,35570E-10,00 - - 3,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.6 copasi - - 3,35570E-10,00 - - 3,01992E-10,001,45508E00,004,93754E-20,008,91632E-10,00
2.6 edu.kgi.roadRunner - - 3,35570E-10,00 - - 3,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.6 jsim9,05976E-20,003,35570E-10,003,95987E-10,003,01992E-10,001,45508E00,004,93755E-20,008,91632E-10,00
2.8 BioUML1,00173E-10,003,53827E-10,004,05872E-10,003,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
2.8 ByoDyn1,00173E-10,003,53827E-10,004,05872E-10,003,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
2.8 MathSBML - - 3,53827E-10,00 - - 3,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
2.8 SBToolbox21,00124E-10,003,53844E-10,004,05881E-10,003,33739E-10,001,48458E00,005,80408E-20,178,86537E-10,00
2.8 SBWOdeSolver - - 3,53827E-10,00 - - 3,33912E-10,001,48456E00,005,81395E-20,008,86566E-10,00
2.8 VCell - - 3,53827E-10,00 - - 3,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
2.8 copasi - - 3,53827E-10,00 - - 3,33911E-10,001,48456E00,005,81390E-20,008,86566E-10,00
2.8 edu.kgi.roadRunner - - 3,53827E-10,00 - - 3,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
2.8 jsim1,00173E-10,003,53827E-10,004,05872E-10,003,33911E-10,001,48456E00,005,81391E-20,008,86566E-10,00
3.0 BioUML1,09843E-10,003,70714E-10,004,14536E-10,003,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.0 ByoDyn1,09843E-10,003,70714E-10,004,14536E-10,003,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.0 MathSBML - - 3,70714E-10,00 - - 3,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.0 SBToolbox21,09793E-10,003,70737E-10,004,14550E-10,003,65967E-10,001,51338E00,006,76120E-20,178,81889E-10,00
3.0 SBWOdeSolver - - 3,70713E-10,00 - - 3,66144E-10,001,51333E00,006,77299E-20,008,81918E-10,00
3.0 VCell - - 3,70714E-10,00 - - 3,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.0 copasi - - 3,70714E-10,00 - - 3,66143E-10,001,51333E00,006,77293E-20,008,81918E-10,00
3.0 edu.kgi.roadRunner - - 3,70714E-10,00 - - 3,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.0 jsim1,09843E-10,003,70714E-10,004,14536E-10,003,66143E-10,001,51333E00,006,77294E-20,008,81918E-10,00
3.2 BioUML1,19559E-10,003,86172E-10,004,22094E-10,003,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 ByoDyn1,19559E-10,003,86172E-10,004,22094E-10,003,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 MathSBML - - 3,86172E-10,00 - - 3,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 SBToolbox21,19506E-10,003,86206E-10,004,22108E-10,003,98362E-10,001,54145E00,007,80352E-20,178,77644E-10,00
3.2 SBWOdeSolver - - 3,86171E-10,00 - - 3,98532E-10,001,54142E00,007,81713E-20,008,77672E-10,00
3.2 VCell - - 3,86172E-10,00 - - 3,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 copasi - - 3,86172E-10,00 - - 3,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 edu.kgi.roadRunner - - 3,86172E-10,00 - - 3,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.2 jsim1,19559E-10,003,86172E-10,004,22094E-10,003,98531E-10,001,54142E00,007,81708E-20,008,77672E-10,00
3.4 BioUML1,29275E-10,004,00145E-10,004,28638E-10,004,30918E-10,001,56886E00,008,94834E-20,008,73805E-10,00
3.4 ByoDyn1,29275E-10,004,00145E-10,004,28638E-10,004,30918E-10,001,56886E00,008,94834E-20,008,73805E-10,00
3.4 MathSBML - - 4,00145E-10,00 - - 4,30918E-10,001,56886E00,008,94835E-20,008,73805E-10,00
3.4 SBToolbox21,29223E-10,004,00186E-10,004,28658E-10,004,30733E-10,001,56892E00,008,93274E-20,178,73771E-10,00
3.4