Test: BIOMD0000000010.xml - Ok

test: BIOMD0000000010.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000010.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6615119181.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: MAPK  MKK_P  MKK_PP  MKKK_P  MAPK_PP  MKK  MAPK_P  MKKK 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation MAPK MKK_P MKK_PP MKKK_P MAPK_PP MKK MAPK_P MKKK
var error var error var error var error var error var error var error var error
0.0 BioUML2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 ByoDyn2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 Jarnac2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 MathSBML2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 Oscill8 Core2,80000E20,001,00000E10,00 - - - - - - 2,80000E20,001,00000E10,009,00000E10,00
0.0 SBToolbox22,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 SBWOdeSolver2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 VCell2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 copasi2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 edu.kgi.roadRunner2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.0 jsim2,80000E20,001,00000E10,001,00000E10,001,00000E10,001,00000E10,002,80000E20,001,00000E10,009,00000E10,00
0.2 BioUML2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 ByoDyn2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 Jarnac2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 MathSBML2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 Oscill8 Core2,79993E20,001,00276E10,00 - - - - - - 2,80012E20,001,00273E10,008,98146E10,00
0.2 SBToolbox22,79990E20,001,00280E10,009,96024E00,001,01858E10,009,98002E00,002,80010E20,001,00270E10,008,98142E10,00
0.2 SBWOdeSolver2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 VCell2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 copasi2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 edu.kgi.roadRunner2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.2 jsim2,79993E20,001,00276E10,009,96027E00,001,01854E10,009,98000E00,002,80012E20,001,00273E10,008,98146E10,00
0.4 BioUML2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 ByoDyn2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 Jarnac2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 MathSBML2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 Oscill8 Core2,79986E20,001,00554E10,00 - - - - - - 2,80024E20,001,00544E10,008,96293E10,00
0.4 SBToolbox22,79990E20,001,00550E10,009,92108E00,001,03706E10,009,96004E00,002,80020E20,001,00540E10,008,96294E10,00
0.4 SBWOdeSolver2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 VCell2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 copasi2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 edu.kgi.roadRunner2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.4 jsim2,79986E20,001,00554E10,009,92110E00,001,03707E10,009,96000E00,002,80024E20,001,00544E10,008,96293E10,00
0.6 BioUML2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 ByoDyn2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 Jarnac2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 MathSBML2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 Oscill8 Core2,79979E20,001,00834E10,00 - - - - - - 2,80034E20,001,00812E10,008,94441E10,00
0.6 SBToolbox22,79980E20,001,00839E10,009,88242E00,001,05555E10,009,93996E00,002,80030E20,001,00809E10,008,94445E10,00
0.6 SBWOdeSolver2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 VCell2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 copasi2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 edu.kgi.roadRunner2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.6 jsim2,79979E20,001,00834E10,009,88246E00,001,05559E10,009,94001E00,002,80034E20,001,00812E10,008,94441E10,00
0.8 BioUML2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 ByoDyn2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 Jarnac2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 MathSBML2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 Oscill8 Core2,79972E20,001,01117E10,00 - - - - - - 2,80044E20,001,01078E10,008,92588E10,00
0.8 SBToolbox22,79970E20,001,01118E10,009,84435E00,001,07413E10,009,91998E00,002,80040E20,001,01079E10,008,92587E10,00
0.8 SBWOdeSolver2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 VCell2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 copasi2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 edu.kgi.roadRunner2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
0.8 jsim2,79972E20,001,01117E10,009,84438E00,001,07412E10,009,92001E00,002,80044E20,001,01078E10,008,92588E10,00
1.0 BioUML2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 ByoDyn2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 Jarnac2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 MathSBML2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 Oscill8 Core2,79966E20,001,01402E10,00 - - - - - - 2,80053E20,001,01341E10,008,90736E10,00
1.0 SBToolbox22,79970E20,001,01399E10,009,80679E00,001,09261E10,009,90000E00,002,80050E20,001,01339E10,008,90739E10,00
1.0 SBWOdeSolver2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 VCell2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 copasi2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 edu.kgi.roadRunner2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.0 jsim2,79966E20,001,01402E10,009,80684E00,001,09264E10,009,90002E00,002,80053E20,001,01341E10,008,90736E10,00
1.2 BioUML2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 ByoDyn2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 Jarnac2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 MathSBML2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 Oscill8 Core2,79960E20,001,01689E10,00 - - - - - - 2,80061E20,001,01602E10,008,88884E10,00
1.2 SBToolbox22,79960E20,001,01689E10,009,76983E00,001,11118E10,009,88002E00,002,80060E20,001,01599E10,008,88882E10,00
1.2 SBWOdeSolver2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 VCell2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 copasi2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 edu.kgi.roadRunner2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.2 jsim2,79960E20,001,01689E10,009,76985E00,001,11116E10,009,88004E00,002,80061E20,001,01602E10,008,88884E10,00
1.4 BioUML2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 ByoDyn2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 Jarnac2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 MathSBML2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 Oscill8 Core2,79954E20,001,01979E10,00 - - - - - - 2,80069E20,001,01861E10,008,87033E10,00
1.4 SBToolbox22,79950E20,001,01979E10,009,73335E00,001,12967E10,009,86004E00,002,80070E20,001,01859E10,008,87033E10,00
1.4 SBWOdeSolver2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 VCell2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 copasi2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 edu.kgi.roadRunner2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.4 jsim2,79954E20,001,01979E10,009,73341E00,001,12967E10,009,86005E00,002,80069E20,001,01861E10,008,87033E10,00
1.6 BioUML2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 ByoDyn2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 Jarnac2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 MathSBML2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 Oscill8 Core2,79948E20,001,02271E10,00 - - - - - - 2,80075E20,001,02117E10,008,85181E10,00
1.6 SBToolbox22,79950E20,001,02268E10,009,69749E00,001,14816E10,009,84006E00,002,80080E20,001,02118E10,008,85184E10,00
1.6 SBWOdeSolver2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 VCell2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 copasi2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 edu.kgi.roadRunner2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.6 jsim2,79948E20,001,02271E10,009,69751E00,001,14819E10,009,84008E00,002,80075E20,001,02117E10,008,85181E10,00
1.8 BioUML2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 ByoDyn2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 Jarnac2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 MathSBML2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 Oscill8 Core2,79943E20,001,02565E10,00 - - - - - - 2,80081E20,001,02371E10,008,83330E10,00
1.8 SBToolbox22,79940E20,001,02566E10,009,66212E00,001,16672E10,009,82008E00,002,80080E20,001,02368E10,008,83328E10,00
1.8 SBWOdeSolver2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 VCell2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 copasi2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 edu.kgi.roadRunner2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
1.8 jsim2,79943E20,001,02565E10,009,66216E00,001,16670E10,009,82011E00,002,80081E20,001,02371E10,008,83330E10,00
2.0 BioUML2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 ByoDyn2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 Jarnac2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 MathSBML2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 Oscill8 Core2,79938E20,001,02861E10,00 - - - - - - 2,80087E20,001,02622E10,008,81478E10,00
2.0 SBToolbox22,79940E20,001,02858E10,009,62734E00,001,18522E10,009,80010E00,002,80090E20,001,02618E10,008,81478E10,00
2.0 SBWOdeSolver2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 VCell2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 copasi2,79938E20,001,02861E10,009,62736E00,001,18521E10,009,80014E00,002,80087E20,001,02622E10,008,81479E10,00
2.0 edu.kgi.roadRunner2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80087E20,001,02622E10,008,81478E10,00
2.0 jsim2,79938E20,001,02861E10,009,62736E00,001,18522E10,009,80014E00,002,80086E20,001,02622E10,008,81478E10,00
2.2 BioUML2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00
2.2 ByoDyn2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00
2.2 Jarnac2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00
2.2 MathSBML2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00
2.2 Oscill8 Core2,79933E20,001,03160E10,00 - - - - - - 2,80091E20,001,02871E10,008,79627E10,00
2.2 SBToolbox22,79930E20,001,03158E10,009,59307E00,001,20370E10,009,78022E00,002,80090E20,001,02868E10,008,79630E10,00
2.2 SBWOdeSolver2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00
2.2 VCell2,79933E20,001,03160E10,009,59310E00,001,20373E10,009,78018E00,002,80091E20,001,02871E10,008,79627E10,00