Test: BIOMD0000000011.xml - Ok

test: BIOMD0000000011.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000011.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: MEKRAFp  MAPK  MEKppMEKPH  RAFpRAFPH  RAFK  MAPKMEKpp  MEK  RAF  MEKpMEKPH  RAFp  MEKPH  RAFRAFK  MAPKpMAPKPH  MAPKppMAPKPH  MAPKpMEKpp  MEKp  MAPKp  MAPKpp  MAPKPH  MEKpRAFp  MEKpp  RAFPH 
Simulators: BioUML  ByoDyn  CVODE  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation MEKRAFp MAPK MEKppMEKPH RAFpRAFPH RAFK MAPKMEKpp MEK RAF MEKpMEKPH RAFp MEKPH RAFRAFK MAPKpMAPKPH MAPKppMAPKPH MAPKpMEKpp MEKp MAPKp MAPKpp MAPKPH MEKpRAFp MEKpp RAFPH
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 ByoDyn0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 CVODE0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 Jarnac0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 MathSBML0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 Oscill8 Core0,00000E00,003,00000E-10,00 - - - - 1,00000E-10,00 - - 2,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,00 - - 0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - - 3,00000E-10,00 - - 0,00000E00,003,00000E-10,00
0.0 SBToolbox20,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 SBWOdeSolver0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 copasi0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.0 edu.kgi.roadRunner0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,00-2,77556E-170,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,77556E-170,003,00000E-10,00-2,77556E-170,000,00000E00,003,00000E-10,00
0.0 jsim0,00000E00,003,00000E-10,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,002,00000E-10,004,00000E-10,000,00000E00,000,00000E00,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,003,00000E-10,00
0.2 BioUML3,13769E-60,003,00000E-10,001,00756E-170,007,10268E-70,009,27462E-20,003,03502E-170,001,99997E-10,003,92671E-10,001,18626E-90,007,10873E-50,002,00000E-10,007,25382E-30,001,70305E-210,004,41284E-410,002,94375E-360,001,48625E-80,006,10834E-200,003,00425E-390,003,00000E-10,001,01930E-130,002,21935E-160,002,99999E-10,00
0.2 ByoDyn3,13769E-60,003,00000E-10,001,00755E-170,007,10268E-70,009,27462E-20,003,03501E-170,001,99997E-10,003,92671E-10,001,18626E-90,007,10873E-50,002,00000E-10,007,25382E-30,001,70303E-210,004,41240E-410,002,94378E-360,001,48625E-80,006,10833E-200,003,00417E-390,003,00000E-10,001,01930E-130,002,21935E-160,002,99999E-10,00
0.2 CVODE3,13770E-60,003,00000E-10,001,03780E-170,007,10269E-70,009,27462E-20,003,12652E-170,001,99997E-10,003,92671E-10,001,18668E-90,007,10873E-50,002,00000E-10,007,25382E-30,001,89490E-210,006,80806E-410,003,41221E-360,001,48617E-80,006,48776E-200,003,95810E-390,003,00000E-10,001,02293E-130,002,24415E-160,002,99999E-10,00
0.2 Jarnac3,13769E-60,003,00000E-10,00-3,10862E-140,007,10267E-70,009,27462E-20,00-2,58995E-150,001,99997E-10,003,92671E-10,001,18626E-90,007,10873E-50,002,00000E-10,007,25382E-30,00-1,40339E-180,000,00000E00,005,75236E-320,001,48625E-80,00-1,82594E-170,002,60902E-150,003,00000E-10,001,01930E-130,00-3,03438E-150,002,99999E-10,00
0.2 MathSBML3,13851E-60,003,00000E-10,009,24956E-180,007,10461E-70,009,27462E-20,002,78640E-170,001,99997E-10,003,92671E-10,001,19591E-90,007,10871E-50,002,00000E-10,007,25381E-30,007,04670E-220,005,56616E-420,005,08408E-360,001,48196E-80,285,73909E-200,006,42071E-390,003,00000E-10,001,09138E-130,003,04922E-160,002,99999E-10,00
0.2 Oscill8 Core3,14056E-60,003,00000E-10,00 - - - - 9,27462E-20,00 - - 1,99997E-10,003,92671E-10,001,18695E-90,007,10857E-50,002,00000E-10,00 - - 3,34032E-120,00 - - 3,21225E-210,001,48840E-80,001,11874E-110,00 - - 3,00000E-10,00 - - 3,34799E-110,002,99999E-10,00
0.2 SBToolbox23,20043E-61,93,00000E-10,00-1,07581E-170,007,24286E-71,99,27456E-20,00-3,27801E-170,002,00000E-10,003,92667E-10,001,40308E-917,37,08905E-50,272,00000E-10,007,25471E-30,00-2,20362E-200,00-4,64983E-380,00-2,13865E-340,001,60271E-87,7-2,44682E-190,00-7,99737E-370,003,00000E-10,002,60526E-140,00-9,90077E-180,003,00000E-10,00
0.2 SBWOdeSolver3,13811E-60,003,00000E-10,001,00935E-170,007,10361E-70,009,27462E-20,003,04043E-170,001,99997E-10,003,92671E-10,001,18682E-90,007,10900E-50,002,00000E-10,007,25378E-30,001,70801E-210,004,54649E-410,002,98687E-360,001,48666E-80,006,12240E-200,003,06708E-390,003,00000E-10,001,02033E-130,002,22231E-160,002,99999E-10,00
0.2 copasi3,13769E-60,003,00000E-10,002,06837E-170,007,10268E-70,009,27462E-20,00-8,65858E-350,001,99997E-10,003,92671E-10,001,18631E-90,007,10873E-50,002,00000E-10,007,25382E-30,00-8,47276E-390,008,47276E-390,008,58763E-350,001,48625E-80,00-8,44261E-190,007,09560E-370,003,00000E-10,001,01881E-130,001,96510E-160,002,99999E-10,00
0.2 edu.kgi.roadRunner3,13769E-60,003,00000E-10,00-2,82370E-170,007,10267E-70,009,27462E-20,002,77556E-170,001,99997E-10,003,92671E-10,001,18626E-90,007,10873E-50,002,00000E-10,007,25382E-30,001,07460E-180,00-8,89253E-160,00-7,46453E-330,001,48626E-80,005,11755E-170,007,49401E-160,003,00000E-10,001,01877E-130,005,00630E-160,002,99999E-10,00
0.2 jsim3,13769E-60,003,00000E-10,001,00756E-170,007,10268E-70,009,27462E-20,003,03501E-170,001,99997E-10,003,92671E-10,001,18626E-90,007,10873E-50,002,00000E-10,007,25382E-30,001,70304E-210,004,41251E-410,002,94372E-360,001,48625E-80,006,10833E-200,003,00412E-390,003,00000E-10,001,01930E-130,002,21935E-160,002,99999E-10,00
0.4 BioUML2,24421E-50,003,00000E-10,003,60583E-150,005,06006E-60,008,67928E-20,001,09075E-140,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,002,50377E-180,004,79936E-350,007,67657E-310,002,02415E-70,004,40374E-170,001,59352E-330,003,00000E-10,001,01230E-110,003,90553E-140,002,99995E-10,00
0.4 ByoDyn2,24421E-50,003,00000E-10,003,60583E-150,005,06006E-60,008,67928E-20,001,09075E-140,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,002,50377E-180,004,79933E-350,007,67655E-310,002,02415E-70,004,40374E-170,001,59351E-330,003,00000E-10,001,01230E-110,003,90553E-140,002,99995E-10,00
0.4 CVODE2,24421E-50,003,00000E-10,003,61134E-150,005,06006E-60,008,67928E-20,001,09244E-140,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,002,52614E-180,005,66908E-350,008,11903E-310,002,02415E-70,004,42151E-170,001,76659E-330,003,00000E-10,001,01240E-110,003,90702E-140,002,99995E-10,00
0.4 Jarnac2,24421E-50,003,00000E-10,00-2,66454E-140,005,06006E-60,008,67928E-20,004,96313E-150,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,00-1,33223E-170,000,00000E00,00-1,29142E-300,002,02415E-70,00-4,60469E-170,00-4,21885E-150,003,00000E-10,001,01230E-110,003,57193E-140,002,99995E-10,00
0.4 MathSBML2,24435E-50,003,00000E-10,003,72025E-150,005,06039E-60,008,67928E-20,001,12533E-140,001,99977E-10,003,86511E-10,003,21473E-80,002,53940E-40,002,00000E-10,001,32072E-20,002,48422E-180,003,31550E-350,009,72023E-310,002,02382E-70,004,53056E-170,002,33508E-330,003,00000E-10,001,01669E-110,003,99956E-140,002,99995E-10,00
0.4 Oscill8 Core2,24451E-50,003,00000E-10,00 - - - - 8,67929E-20,00 - - 1,99977E-10,003,86511E-10,003,21862E-80,002,53942E-40,002,00000E-10,00 - - 5,17202E-120,00 - - 3,27778E-210,002,02489E-70,004,66921E-120,00 - - 3,00000E-10,00 - - 5,88805E-120,002,99995E-10,00
0.4 SBToolbox22,26496E-50,913,00000E-10,005,15730E-150,005,10500E-60,888,67878E-20,001,56454E-140,001,99980E-10,003,86511E-10,003,67512E-814,22,53083E-40,342,00000E-10,001,32122E-20,006,91426E-180,002,98430E-340,001,07359E-300,002,12342E-74,98,42501E-170,004,54343E-330,003,00000E-10,001,02447E-110,004,44409E-140,002,99990E-10,00
0.4 SBWOdeSolver2,24433E-50,003,00000E-10,003,60855E-150,005,06034E-60,008,67929E-20,001,09157E-140,001,99977E-10,003,86511E-10,003,21727E-80,002,53945E-40,002,00000E-10,001,32071E-20,002,50686E-180,004,83839E-350,007,71927E-310,002,02439E-70,004,40802E-170,001,60404E-330,003,00000E-10,001,01274E-110,003,90772E-140,002,99995E-10,00
0.4 copasi2,24421E-50,003,00000E-10,003,60912E-150,005,06006E-60,008,67928E-20,001,09208E-140,001,99977E-10,003,86511E-10,003,21661E-80,002,53942E-40,002,00000E-10,001,32072E-20,00-3,82510E-350,003,82510E-350,007,61450E-310,002,02415E-70,004,27044E-170,001,60608E-330,003,00000E-10,001,01228E-110,003,90437E-140,002,99995E-10,00
0.4 edu.kgi.roadRunner2,24421E-50,003,00000E-10,003,79590E-150,005,06006E-60,008,67928E-20,009,54792E-150,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,004,01826E-170,00-5,14721E-150,008,82665E-300,002,02415E-70,003,33976E-160,004,77396E-150,003,00000E-10,001,01229E-110,004,05385E-140,002,99995E-10,00
0.4 jsim2,24421E-50,003,00000E-10,003,60583E-150,005,06006E-60,008,67928E-20,001,09075E-140,001,99977E-10,003,86511E-10,003,21660E-80,002,53942E-40,002,00000E-10,001,32072E-20,002,50377E-180,004,79933E-350,007,67655E-310,002,02415E-70,004,40374E-170,001,59351E-330,003,00000E-10,001,01230E-110,003,90553E-140,002,99995E-10,00
0.6 BioUML6,79132E-50,003,00000E-10,009,88852E-140,001,52531E-50,008,18970E-20,003,00413E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,57890E-160,001,28387E-310,008,79962E-280,008,78760E-70,001,81987E-150,002,77852E-300,003,00000E-10,001,35534E-100,007,04958E-130,002,99985E-10,00
0.6 ByoDyn6,79132E-50,003,00000E-10,009,88852E-140,001,52531E-50,008,18970E-20,003,00413E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,57890E-160,001,28387E-310,008,79962E-280,008,78760E-70,001,81987E-150,002,77851E-300,003,00000E-10,001,35534E-100,007,04958E-130,002,99985E-10,00
0.6 CVODE6,79132E-50,003,00000E-10,009,89100E-140,001,52531E-50,008,18970E-20,003,00490E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,58243E-160,001,34079E-310,008,87957E-280,008,78761E-70,001,82141E-150,002,84127E-300,003,00000E-10,001,35535E-100,007,04984E-130,002,99985E-10,00
0.6 Jarnac6,79132E-50,003,00000E-10,004,02733E-140,001,52531E-50,008,18970E-20,002,90874E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,02507E-160,00-1,11022E-160,007,09382E-280,008,78760E-70,001,61721E-150,00-2,11497E-130,003,00000E-10,001,35534E-100,007,00038E-130,002,99985E-10,00
0.6 MathSBML6,79134E-50,003,00000E-10,009,98177E-140,001,52532E-50,008,18970E-20,003,03267E-130,001,99931E-10,003,81301E-10,002,08043E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,58345E-160,009,09594E-320,009,93997E-280,008,78845E-70,001,84793E-150,003,64094E-300,003,00000E-10,001,35581E-100,007,08483E-130,002,99985E-10,00
0.6 Oscill8 Core6,79166E-50,003,00000E-10,00 - - - - 8,18971E-20,00 - - 1,99931E-10,003,81301E-10,002,08162E-70,005,12775E-40,002,00000E-10,00 - - 5,45769E-120,00 - - 2,88381E-210,008,78885E-70,001,20775E-120,00 - - 3,00000E-10,00 - - 1,68227E-120,002,99985E-10,00
0.6 SBToolbox26,80708E-50,233,00000E-10,001,05752E-130,001,52849E-50,208,18904E-20,003,21709E-130,001,99930E-10,003,81294E-10,002,19511E-75,55,11799E-40,192,00000E-10,001,81096E-20,002,13018E-160,00-9,10750E-310,00-1,14933E-270,008,94133E-71,72,15524E-150,00-8,67664E-300,003,00000E-10,001,29820E-104,26,97794E-130,002,99981E-10,00
0.6 SBWOdeSolver6,79154E-50,003,00000E-10,009,89293E-140,001,52536E-50,008,18971E-20,003,00547E-130,001,99931E-10,003,81301E-10,002,08129E-70,005,12778E-40,002,00000E-10,001,81029E-20,001,58006E-160,001,29321E-310,008,82986E-280,008,78820E-70,001,82092E-150,002,79244E-300,003,00000E-10,001,35570E-100,007,05188E-130,002,99985E-10,00
0.6 copasi6,79132E-50,003,00000E-10,009,88929E-140,001,52531E-50,008,18970E-20,003,00490E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,11437E-160,001,25183E-310,008,98253E-280,008,78760E-70,001,81851E-150,002,95701E-300,003,00000E-10,001,35532E-100,007,04924E-130,002,99985E-10,00
0.6 edu.kgi.roadRunner6,79132E-50,003,00000E-10,009,94981E-140,001,52531E-50,008,18970E-20,002,99566E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,002,77895E-160,00-5,44043E-150,001,17358E-270,008,78760E-70,002,05258E-150,005,13478E-150,003,00000E-10,001,35535E-100,007,05606E-130,002,99985E-10,00
0.6 jsim6,79132E-50,003,00000E-10,009,88852E-140,001,52531E-50,008,18970E-20,003,00413E-130,001,99931E-10,003,81301E-10,002,08103E-70,005,12774E-40,002,00000E-10,001,81030E-20,001,57890E-160,001,28387E-310,008,79962E-280,008,78760E-70,001,81987E-150,002,77851E-300,003,00000E-10,001,35534E-100,007,04958E-130,002,99985E-10,00
0.8 BioUML1,44746E-40,003,00000E-10,009,56642E-130,003,23869E-50,007,78647E-20,002,91900E-120,001,99852E-10,003,76866E-10,007,50989E-70,008,22024E-40,001,99999E-10,002,21353E-20,002,76369E-150,002,98326E-290,001,11409E-250,002,39835E-60,002,35323E-140,004,74435E-280,003,00000E-10,008,03161E-100,005,06719E-120,002,99968E-10,00
0.8 ByoDyn1,44746E-40,003,00000E-10,009,56642E-130,003,23869E-50,007,78647E-20,002,91900E-120,001,99852E-10,003,76866E-10,007,50989E-70,008,22024E-40,001,99999E-10,002,21353E-20,002,76369E-150,002,98326E-290,001,11409E-250,002,39835E-60,002,35323E-140,004,74435E-280,003,00000E-10,008,03161E-100,005,06719E-120,002,99968E-10,00
0.8 CVODE1,44746E-40,003,00000E-10,009,56768E-130,003,23869E-50,007,78647E-20,002,91940E-120,001,99852E-10,003,76866E-10,007,50989E-70,008,22024E-40,001,99999E-10,002,21353E-20,002,76777E-150,003,15672E-290,001,12893E-250,002,39836E-60,002,35444E-140,004,89919E-280,003,00000E-10,008,03158E-100,005,06723E-120,002,99968E-10,00
0.8 Jarnac1,44746E-40,003,00000E-10,008,98503E-130,003,23869E-50,007,78647E-20,002,90386E-120,001,99852E-10,003,76866E-10,007,50989E-70,008,22024E-40,00