Test: BIOMD0000000013.xml - Ok

test: BIOMD0000000013.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000013.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: BPGA_ch  G6P_ch  G1P_ch  Pi_ch  Ru5P_ch  F6P_ch  R5P_ch  ADP_ch  GAP_ch  X5P_ch  S7P_ch  ATP_ch  PGA_ch  DHAP_ch  SBP_ch  RuBP_ch  E4P_ch  FBP_ch 
Simulators: BioUML  ByoDyn  CVODE  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  copasi  edu.kgi.roadRunner  jsim 
timesimulation BPGA_ch G6P_ch G1P_ch Pi_ch Ru5P_ch F6P_ch R5P_ch ADP_ch GAP_ch X5P_ch S7P_ch ATP_ch PGA_ch DHAP_ch SBP_ch RuBP_ch E4P_ch FBP_ch
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 ByoDyn1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 CVODE1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 Jarnac1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 MathSBML1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 Oscill8 Core1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,00 - - 1,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 SBToolbox21,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36480E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35480E00,002,93450E-10,001,56490E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 copasi1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 edu.kgi.roadRunner1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.0 jsim1,48250E-10,003,13960E00,001,82060E-10,001,56620E00,002,35000E-30,001,36481E00,005,99000E-30,001,49000E-30,001,33400E-20,003,63000E-30,005,41000E-30,004,98060E-10,003,35479E00,002,93450E-10,001,56486E00,003,36440E-10,004,10210E-10,002,77600E-20,00
0.2 BioUML1,76547E-20,003,66959E00,002,12836E-10,001,10960E00,001,48879E-30,001,59548E00,003,72199E-30,006,01394E-30,001,17915E-20,002,22209E-30,008,25859E-40,004,93536E-10,006,93965E-10,002,59412E-10,002,39832E00,004,19077E-10,007,11172E-10,002,17177E-20,00
0.2 ByoDyn1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94022E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 CVODE1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94021E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 Jarnac1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94022E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 MathSBML1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94022E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 Oscill8 Core1,76548E-20,003,66927E00,002,12818E-10,001,10947E00,001,48879E-30,001,59533E00,003,72198E-30,00 - - 1,17913E-20,002,22209E-30,008,25871E-40,004,93536E-10,006,94013E-10,002,59407E-10,002,39803E00,004,19049E-10,007,11097E-10,002,17170E-20,00
0.2 SBToolbox21,76584E-20,003,66949E00,002,12835E-10,001,10900E00,001,48913E-30,001,59544E00,003,72272E-30,006,01519E-30,001,17922E-20,002,22249E-30,008,26125E-40,004,93531E-10,006,94250E-10,002,59426E-10,002,39805E00,004,19134E-10,007,11051E-10,002,17199E-20,00
0.2 copasi1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25868E-40,004,93536E-10,006,94022E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 edu.kgi.roadRunner1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94022E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.2 jsim1,76548E-20,003,66927E00,002,12818E-10,001,10943E00,001,48879E-30,001,59534E00,003,72198E-30,006,01437E-30,001,17913E-20,002,22209E-30,008,25867E-40,004,93536E-10,006,94021E-10,002,59408E-10,002,39804E00,004,19052E-10,007,11100E-10,002,17170E-20,00
0.4 BioUML1,74529E-20,003,53265E00,002,04894E-10,009,34447E-10,001,43138E-30,001,53593E00,003,57845E-30,006,27977E-30,001,15335E-20,002,13640E-30,007,80514E-40,004,93270E-10,007,16747E-10,002,53736E-10,002,29751E00,003,96436E-10,006,96515E-10,002,07779E-20,00
0.4 ByoDyn1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 CVODE1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 Jarnac1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 MathSBML1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 Oscill8 Core1,74538E-20,003,53166E00,002,04836E-10,009,34052E-10,001,43124E-30,001,53550E00,003,57810E-30,00 - - 1,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16918E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 SBToolbox21,74531E-20,003,53194E00,002,04850E-10,009,33654E-10,001,43115E-30,001,53564E00,003,57793E-30,006,28148E-30,001,15324E-20,002,13608E-30,007,80383E-40,004,93270E-10,007,16957E-10,002,53698E-10,002,29678E00,003,96323E-10,006,96393E-10,002,07723E-20,00
0.4 copasi1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80437E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96322E-10,002,07739E-20,00
0.4 edu.kgi.roadRunner1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28097E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16919E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96321E-10,002,07739E-20,00
0.4 jsim1,74538E-20,003,53166E00,002,04836E-10,009,34049E-10,001,43124E-30,001,53551E00,003,57810E-30,006,28096E-30,001,15324E-20,002,13619E-30,007,80438E-40,004,93269E-10,007,16918E-10,002,53712E-10,002,29665E00,003,96335E-10,006,96322E-10,002,07739E-20,00
0.6 BioUML1,74293E-20,003,36130E00,001,94955E-10,009,03395E-10,001,40725E-30,001,46143E00,003,51814E-30,006,34631E-30,001,13499E-20,002,10039E-30,007,66657E-40,004,93204E-10,007,23460E-10,002,49697E-10,002,15330E00,003,75021E-10,006,63359E-10,002,01215E-20,00
0.6 ByoDyn1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46076E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63043E-10,002,01153E-20,00
0.6 CVODE1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46076E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63043E-10,002,01153E-20,00
0.6 Jarnac1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46076E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63043E-10,002,01153E-20,00
0.6 MathSBML1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46076E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63043E-10,002,01153E-20,00
0.6 Oscill8 Core1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46077E00,003,51766E-30,00 - - 1,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74834E-10,006,63043E-10,002,01153E-20,00
0.6 SBToolbox21,74291E-20,003,35971E00,001,94860E-10,009,02830E-10,001,40697E-30,001,46072E00,003,51737E-30,006,34766E-30,001,13485E-20,002,09990E-30,007,66448E-40,004,93200E-10,007,23616E-10,002,49661E-10,002,15193E00,003,74813E-10,006,63080E-10,002,01149E-20,00
0.6 copasi1,74296E-20,003,35976E00,001,94866E-10,009,02983E-10,001,40706E-30,001,46077E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66565E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63044E-10,002,01153E-20,00
0.6 edu.kgi.roadRunner1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46076E00,003,51766E-30,006,34749E-30,001,13481E-20,002,10011E-30,007,66566E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74833E-10,006,63043E-10,002,01153E-20,00
0.6 jsim1,74296E-20,003,35976E00,001,94866E-10,009,02984E-10,001,40706E-30,001,46077E00,003,51766E-30,006,34748E-30,001,13481E-20,002,10011E-30,007,66565E-40,004,93203E-10,007,23607E-10,002,49658E-10,002,15194E00,003,74834E-10,006,63044E-10,002,01153E-20,00
0.8 BioUML1,74123E-20,003,19002E00,001,85021E-10,008,79871E-10,001,38493E-30,001,38697E00,003,46235E-30,006,40040E-30,001,11674E-20,002,06708E-30,007,54687E-40,004,93150E-10,007,28991E-10,002,45682E-10,002,01028E00,003,54085E-10,006,29418E-10,001,94797E-20,00
0.8 ByoDyn1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 CVODE1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 Jarnac1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 MathSBML1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 Oscill8 Core1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,00 - - 1,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 SBToolbox21,74138E-20,003,18830E00,001,84920E-10,008,79931E-10,001,38480E-30,001,38620E00,003,46187E-30,006,40070E-30,001,11648E-20,002,06686E-30,007,54703E-40,004,93150E-10,007,29091E-10,002,45618E-10,002,00836E00,003,53854E-10,006,28992E-10,001,94688E-20,00
0.8 copasi1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 edu.kgi.roadRunner1,74118E-20,003,18805E00,001,84907E-10,008,79449E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29002E-10,001,94720E-20,00
0.8 jsim1,74118E-20,003,18805E00,001,84907E-10,008,79450E-10,001,38472E-30,001,38611E00,003,46181E-30,006,40151E-30,001,11652E-20,002,06676E-30,007,54602E-40,004,93148E-10,007,29101E-10,002,45634E-10,002,00855E00,003,53831E-10,006,29003E-10,001,94720E-20,00
1.0 BioUML1,73935E-20,003,02053E00,001,75191E-10,008,56251E-10,001,36326E-30,001,31327E00,003,40816E-30,006,45788E-30,001,09836E-20,002,03473E-30,007,43505E-40,004,93092E-10,007,34831E-10,002,41640E-10,001,87062E00,003,33621E-10,005,95489E-10,001,88440E-20,00
1.0 ByoDyn1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 CVODE1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 Jarnac1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 MathSBML1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 Oscill8 Core1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,00 - - 1,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 SBToolbox21,73931E-20,003,01853E00,001,75078E-10,008,56091E-10,001,36291E-30,001,31237E00,003,40737E-30,006,45790E-30,001,09809E-20,002,03426E-30,007,43334E-40,004,93090E-10,007,34810E-10,002,41581E-10,001,86878E00,003,33350E-10,005,95087E-10,001,88342E-20,00
1.0 copasi1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,007,34893E-10,002,41580E-10,001,86879E00,003,33356E-10,005,95053E-10,001,88346E-20,00
1.0 edu.kgi.roadRunner1,73931E-20,003,01839E00,001,75066E-10,008,55932E-10,001,36295E-30,001,31234E00,003,40739E-30,006,45857E-30,001,09809E-20,002,03427E-30,007,43354E-40,004,93091E-10,