Test: BIOMD0000000014.xml - Ok

test: BIOMD0000000014.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000014.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: K_2_0  K_1_2  S_2_1_0  S_2_1_1  S_0_2_m1  K_MEKP_2_1  MAPKP  S_RAFK_0_0_0  K_3_1  K_MEKP_2_2  K_3_0  S_0_1_m1  S_m1_0_m1  S_RAFK_1_m1_0  S_0_1_1  K_1_1  S_0_0_1  K_1_0  S_0_0_0  S_2_2_0  S_2_2_1  S_0_1_0  K_K_2_1_3_1  S_RAFK_0_1_0  K_2_2  S_1_2_m1  K_2_1  K_K_1_1_2_2  S_m1_2_m1  S_m1_2_0  S_1_0_1  S_m1_2_1  S_RAFK_m1_0_0  S_1_0_0  S_m1_m1_1  S_m1_m1_0  S_RAFK_m1_2_0  S_0_m1_m1  S_2_1_m1  S_1_m1_m1  S_m1_1_1  S_m1_1_0  K_RAFK_3_0  S_1_1_1  S_RAFK_m1_m1_0  S_1_1_0  S_m1_0_1  S_m1_0_0  S_1_2_0  S_1_2_1  K_K_2_0_3_1  S_2_0_m1  S_1_1_m1  S_RAFK_2_0_0  RAFK  S_1_m1_1  RAFP  MEKP  S_RAFK_2_1_0  S_RAFK_m1_1_0  S_RAFK_2_m1_0  K_K_1_0_2_2  S_1_m1_0  S_2_m1_0  S_2_m1_1  S_0_m1_1  K_RAFP_3_1  S_0_m1_0  S_1_0_m1  K_MAPKP_1_2  K_MAPKP_1_1  S_RAFK_0_2_0  S_2_m1_m1  S_m1_1_m1  S_2_2_m1  S_0_2_0  S_0_2_1  S_RAFK_1_2_0  S_2_0_0  S_2_0_1  S_RAFK_1_1_0  S_0_0_m1  S_RAFK_2_2_0  S_RAFK_1_0_0  S_RAFK_0_m1_0  S_m1_m1_m1 
Simulators: BioUML  ByoDyn  CVODE  Jarnac  MathSBML  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation K_2_0 K_1_2 S_2_1_0 S_2_1_1 S_0_2_m1 K_MEKP_2_1 MAPKP S_RAFK_0_0_0 K_3_1 K_MEKP_2_2 K_3_0 S_0_1_m1 S_m1_0_m1 S_RAFK_1_m1_0 S_0_1_1 K_1_1 S_0_0_1 K_1_0 S_0_0_0 S_2_2_0 S_2_2_1 S_0_1_0 K_K_2_1_3_1 S_RAFK_0_1_0 K_2_2 S_1_2_m1 K_2_1 K_K_1_1_2_2 S_m1_2_m1 S_m1_2_0 S_1_0_1 S_m1_2_1 S_RAFK_m1_0_0 S_1_0_0 S_m1_m1_1 S_m1_m1_0 S_RAFK_m1_2_0 S_0_m1_m1 S_2_1_m1 S_1_m1_m1 S_m1_1_1 S_m1_1_0 K_RAFK_3_0 S_1_1_1 S_RAFK_m1_m1_0 S_1_1_0 S_m1_0_1 S_m1_0_0 S_1_2_0 S_1_2_1 K_K_2_0_3_1 S_2_0_m1 S_1_1_m1 S_RAFK_2_0_0 RAFK S_1_m1_1 RAFP MEKP S_RAFK_2_1_0 S_RAFK_m1_1_0 S_RAFK_2_m1_0 K_K_1_0_2_2 S_1_m1_0 S_2_m1_0 S_2_m1_1 S_0_m1_1 K_RAFP_3_1 S_0_m1_0 S_1_0_m1 K_MAPKP_1_2 K_MAPKP_1_1 S_RAFK_0_2_0 S_2_m1_m1 S_m1_1_m1 S_2_2_m1 S_0_2_0 S_0_2_1 S_RAFK_1_2_0 S_2_0_0 S_2_0_1 S_RAFK_1_1_0 S_0_0_m1 S_RAFK_2_2_0 S_RAFK_1_0_0 S_RAFK_0_m1_0 S_m1_m1_m1
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 ByoDyn2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 CVODE2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 Jarnac2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 MathSBML2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 SBToolbox22,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 SBWOdeSolver2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 copasi2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,78592E-170,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,39296E-170,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00-1,39296E-170,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,00-2,78592E-170,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 edu.kgi.roadRunner2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,77556E-170,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,38778E-170,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00-1,38778E-170,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,004,16334E-170,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,00-2,77556E-170,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.0 jsim2,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,003,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,000,00000E00,003,00000E-10,002,00000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-10,00
0.2 BioUML1,73041E-10,002,44645E-180,003,98678E-270,001,45636E-220,004,94969E-130,008,06885E-100,003,00000E-10,001,59497E-30,004,87049E-50,005,07022E-140,002,54235E-10,001,54540E-100,008,62519E-30,003,96006E-200,008,65979E-80,001,55041E-150,001,76008E-50,003,53655E-10,002,69800E-30,006,02988E-190,002,30527E-150,001,04616E-110,004,79446E-140,002,03523E-120,009,41559E-130,002,25133E-150,009,96319E-90,003,75906E-280,005,98024E-130,003,45183E-140,004,18523E-170,004,14831E-100,002,62272E-30,001,41323E-200,009,20515E-50,006,41618E-30,00