Test: BIOMD0000000017.xml - Ok

test: BIOMD0000000017.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000017.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: ADP  NAD  CoA  AcetoinOut  AcLac  NADH  AcO  ATP  pyruvate  AcP  AcetoinIn  AcCoA 
Simulators: BioUML  ByoDyn  CVODE  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation ADP NAD CoA AcetoinOut AcLac NADH AcO ATP pyruvate AcP AcetoinIn AcCoA
var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 CVODE5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core - - 1,00000E10,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBToolbox25,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim5,00000E00,001,00000E10,001,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-120,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML9,93961E-10,009,88653E00,004,29323E-10,003,60360E-30,005,59430E-40,001,13466E-10,001,33798E-20,004,00604E00,003,34778E-10,005,31506E-20,005,18279E-40,005,70677E-10,00
0.2 ByoDyn9,93961E-10,009,88654E00,004,29323E-10,003,60360E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70677E-10,00
0.2 CVODE9,93961E-10,009,88654E00,004,29323E-10,003,60360E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70677E-10,00
0.2 MathSBML9,93961E-10,009,88654E00,004,29323E-10,003,60360E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70677E-10,00
0.2 Oscill8 Core - - 9,88503E00,00 - - -4,00394E-21,21E3-1,64319E-12,95E4 - - 1,34264E-20,334,00592E00,003,32701E-10,625,30117E-20,26-7,94482E-31,63E35,69060E-10,28
0.2 SBToolbox29,93960E-10,009,88660E00,004,29246E-10,003,60336E-30,005,59688E-40,001,13442E-10,001,33828E-20,004,00600E00,003,34826E-10,005,31584E-20,005,18366E-40,005,70754E-10,00
0.2 SBWOdeSolver9,93961E-10,009,88654E00,004,29323E-10,003,60361E-30,005,59419E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31505E-20,005,18277E-40,005,70677E-10,00
0.2 copasi9,93961E-10,009,88654E00,004,29322E-10,003,60361E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70678E-10,00
0.2 edu.kgi.roadRunner9,93961E-10,009,88654E00,004,29323E-10,003,60360E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70677E-10,00
0.2 jsim9,93961E-10,009,88654E00,004,29323E-10,003,60360E-30,005,59431E-40,001,13465E-10,001,33798E-20,004,00604E00,003,34776E-10,005,31506E-20,005,18278E-40,005,70677E-10,00
0.4 BioUML9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35426E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 ByoDyn9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 CVODE9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 MathSBML9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 Oscill8 Core - - 9,88435E00,00 - - -1,08340E-11,49E3-1,82850E-12,72E4 - - 1,34296E-20,154,00585E00,003,30862E-11,45,29085E-20,62-8,80140E-31,77E35,67872E-10,65
0.4 SBToolbox29,93920E-10,009,88670E00,004,28430E-10,007,79248E-30,006,74110E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32360E-20,005,26246E-40,005,71570E-10,00
0.4 SBWOdeSolver9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73480E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 copasi9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35426E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.4 jsim9,93916E-10,009,88675E00,004,28433E-10,007,79269E-30,006,73483E-40,001,13251E-10,001,34086E-20,004,00608E00,003,35427E-10,005,32363E-20,005,26209E-40,005,71567E-10,00
0.6 BioUML9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 CVODE9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 MathSBML9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87429E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 Oscill8 Core - - 9,88425E00,00 - - -1,79369E-11,59E3-1,84905E-12,70E4 - - 1,34265E-20,134,00584E00,003,30586E-11,45,28872E-20,66-8,89311E-31,79E35,67637E-10,69
0.6 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,001,20064E-20,006,87728E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27089E-40,005,71570E-10,00
0.6 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 copasi9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87426E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.6 jsim9,93916E-10,009,88675E00,004,28430E-10,001,20065E-20,006,87427E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27070E-40,005,71570E-10,00
0.8 BioUML9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13252E-10,001,34087E-20,004,00608E00,003,35432E-10,005,32366E-20,005,27174E-40,005,71570E-10,00
0.8 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
0.8 CVODE9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
0.8 MathSBML9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89112E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27174E-40,005,71570E-10,00
0.8 Oscill8 Core - - 9,88424E00,00 - - -2,50695E-11,65E3-1,85133E-12,70E4 - - 1,34262E-20,134,00584E00,003,30555E-11,55,28848E-20,66-8,90324E-31,79E35,67611E-10,69
0.8 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,001,62231E-20,006,89208E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27180E-40,005,71570E-10,00
0.8 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
0.8 copasi9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89108E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
0.8 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
0.8 jsim9,93916E-10,009,88675E00,004,28430E-10,001,62232E-20,006,89109E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27173E-40,005,71570E-10,00
1.0 BioUML9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13248E-10,001,34087E-20,004,00608E00,003,35428E-10,005,32366E-20,005,27185E-40,005,71570E-10,00
1.0 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 CVODE9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 MathSBML9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89314E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 Oscill8 Core - - 9,88423E00,00 - - -3,22054E-11,68E3-1,85158E-12,70E4 - - 1,34261E-20,134,00584E00,003,30552E-11,55,28845E-20,66-8,90436E-31,79E35,67608E-10,69
1.0 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,002,04399E-20,006,89350E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27190E-40,005,71570E-10,00
1.0 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 copasi9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89311E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.0 jsim9,93916E-10,009,88675E00,004,28430E-10,002,04402E-20,006,89312E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27186E-40,005,71570E-10,00
1.2 BioUML9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13248E-10,001,34087E-20,004,00608E00,003,35428E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 CVODE9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 MathSBML9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89337E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 Oscill8 Core - - 9,88423E00,00 - - -3,93416E-11,70E3-1,85161E-12,70E4 - - 1,34261E-20,134,00584E00,003,30551E-11,55,28845E-20,66-8,90448E-31,79E35,67608E-10,69
1.2 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,002,46576E-20,006,89341E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27190E-40,005,71570E-10,00
1.2 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 copasi9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.2 jsim9,93916E-10,009,88675E00,004,28430E-10,002,46572E-20,006,89336E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 BioUML9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13251E-10,001,34087E-20,004,00608E00,003,35431E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.4 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 CVODE9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 MathSBML9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89340E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.4 Oscill8 Core - - 9,88423E00,00 - - -4,64779E-11,71E3-1,85161E-12,70E4 - - 1,34261E-20,134,00584E00,003,30551E-11,55,28845E-20,66-8,90450E-31,79E35,67608E-10,69
1.4 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,002,88745E-20,006,89340E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27190E-40,005,71570E-10,00
1.4 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 copasi9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 edu.kgi.roadRunner9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.4 jsim9,93916E-10,009,88675E00,004,28430E-10,002,88743E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 BioUML9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13252E-10,001,34087E-20,004,00608E00,003,35432E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 ByoDyn9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 CVODE9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 MathSBML9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27187E-40,005,71570E-10,00
1.6 Oscill8 Core - - 9,88423E00,00 - - -5,36143E-11,72E3-1,85161E-12,70E4 - - 1,34261E-20,134,00584E00,003,30551E-11,55,28845E-20,66-8,90450E-31,79E35,67608E-10,69
1.6 SBToolbox29,93920E-10,009,88680E00,004,28430E-10,003,30912E-20,006,89330E-40,001,13250E-10,001,34090E-20,004,00610E00,003,35430E-10,005,32370E-20,005,27190E-40,005,71570E-10,00
1.6 SBWOdeSolver9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 copasi9,93916E-10,009,88675E00,004,28430E-10,003,30913E-20,006,89339E-40,001,13250E-10,001,34087E-20,004,00608E00,003,35430E-10,005,32366E-20,005,27188E-40,005,71570E-10,00
1.6 edu.kgi.roadRunner9,93916E-10,00