Test: BIOMD0000000018.xml - Ok

test: BIOMD0000000018.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000018.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: MTX4b  DHFRf  MTX5  MTX4  MTX3  MTX2  MTX1  FH4  AICAR  CHOFH4  HCHO  CH2FH4  MTX1b  FGAR  FH2f  MTX5b  FFH2  CH3FH4  FH2b  MTX2b  DHFRtot  MTX3b 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation MTX4b DHFRf MTX5 MTX4 MTX3 MTX2 MTX1 FH4 AICAR CHOFH4 HCHO CH2FH4 MTX1b FGAR FH2f MTX5b FFH2 CH3FH4 FH2b MTX2b DHFRtot MTX3b
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.0 ByoDyn0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,40000E-10,370,00000E00,00
0.0 MathSBML0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.0 Oscill8 Core0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.0 SBToolbox20,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.0 copasi0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.0 jsim0,00000E00,006,40000E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,60000E-10,003,69500E00,001,00000E00,007,40000E-30,002,60000E-10,000,00000E00,001,64900E10,001,20000E-30,000,00000E00,003,32000E-40,001,63000E00,002,40000E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.2 BioUML0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99430E-10,007,38316E-30,002,61942E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,002,41659E-30,000,00000E00,006,42402E-10,000,00000E00,00
0.2 ByoDyn0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99430E-10,007,38316E-30,002,61942E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,002,40000E-30,000,00000E00,006,40000E-10,000,00000E00,00
0.2 MathSBML0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99430E-10,007,38316E-30,002,61942E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,002,41659E-30,000,00000E00,006,42402E-10,000,00000E00,00
0.2 Oscill8 Core0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,57493E-10,003,69356E00,009,98294E-10,007,38556E-30,002,61256E-10,000,00000E00,001,64376E10,004,76071E-394,00,00000E00,001,28376E-30,001,62846E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.2 SBToolbox20,00000E00,006,39990E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58920E-10,003,69510E00,009,99430E-10,007,38301E-30,002,61940E-10,000,00000E00,001,64790E10,001,20830E-30,000,00000E00,003,28490E-40,001,62970E00,002,41660E-30,000,00000E00,006,42400E-10,000,00000E00,00
0.2 SBWOdeSolver0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99428E-10,007,38316E-30,002,61943E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.2 copasi0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99430E-10,007,38316E-30,002,61942E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,002,41659E-30,000,00000E00,006,42402E-10,000,00000E00,00
0.2 edu.kgi.roadRunner0,00000E00,006,39986E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58914E-10,003,69502E00,009,99430E-10,007,38316E-30,002,61942E-10,000,00000E00,001,64792E10,001,20832E-30,000,00000E00,003,28495E-40,001,62972E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.2 jsim0,00000E00,001,03948E-6100,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80456E-399,61,65368E055,22,37108E-399,85,74104E-322,24,27461E-499,80,00000E00,007,85100E-299,52,45448E-30,000,00000E00,003,35542E02,61E55,83198E-399,67,97305E-9100,00,00000E00,001,04745E-6100,00,00000E00,00
0.4 BioUML0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,002,41687E-30,000,00000E00,006,42388E-10,000,00000E00,00
0.4 ByoDyn0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,002,40000E-30,000,00000E00,006,40000E-10,000,00000E00,00
0.4 MathSBML0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,002,41687E-30,000,00000E00,006,42388E-10,000,00000E00,00
0.4 Oscill8 Core0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,57346E-10,003,69156E00,009,99024E-10,007,38488E-30,002,61187E-10,000,00000E00,001,64330E10,006,47826E-34360,00000E00,001,75873E-30,001,62577E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.4 SBToolbox20,00000E00,006,39970E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58980E-10,003,69500E00,009,99570E-10,007,38090E-30,002,61970E-10,000,00000E00,001,64810E10,001,20850E-30,000,00000E00,003,28540E-40,001,62950E00,002,41690E-30,000,00000E00,006,42390E-10,000,00000E00,00
0.4 SBWOdeSolver0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.4 copasi0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,002,41687E-30,000,00000E00,006,42388E-10,000,00000E00,00
0.4 edu.kgi.roadRunner0,00000E00,006,39971E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58982E-10,003,69503E00,009,99567E-10,007,38103E-30,002,61975E-10,000,00000E00,001,64814E10,001,20849E-30,000,00000E00,003,28540E-40,001,62950E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.4 jsim0,00000E00,001,04741E-6100,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,14238E-6100,01,16457E-299,75,54976E-6100,05,73736E-322,31,02288E-6100,00,00000E00,001,84347E-4100,01,73484E-598,60,00000E00,003,36827E01,91E51,34722E-5100,05,67837E-11100,00,00000E00,001,04746E-6100,00,00000E00,00
0.6 BioUML0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38066E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,002,41709E-30,000,00000E00,006,42374E-10,000,00000E00,00
0.6 ByoDyn0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38066E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,002,40000E-30,000,00000E00,006,40000E-10,000,00000E00,00
0.6 MathSBML0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38066E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,002,41709E-30,000,00000E00,006,42374E-10,000,00000E00,00
0.6 Oscill8 Core0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,57546E-10,003,69044E00,001,00014E00,007,38458E-30,002,61285E-10,000,00000E00,001,64404E10,007,74177E-35410,00000E00,002,10627E-30,001,62276E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.6 SBToolbox20,00000E00,006,39960E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59039E-10,003,69500E00,009,99680E-10,007,38050E-30,002,62000E-10,000,00000E00,001,64830E10,001,20860E-30,000,00000E00,003,28580E-40,001,62930E00,002,41710E-30,000,00000E00,006,42370E-10,000,00000E00,00
0.6 SBWOdeSolver0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38066E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.6 copasi0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38065E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,002,41709E-30,000,00000E00,006,42374E-10,000,00000E00,00
0.6 edu.kgi.roadRunner0,00000E00,006,39957E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59037E-10,003,69503E00,009,99678E-10,007,38066E-30,002,62002E-10,000,00000E00,001,64833E10,001,20863E-30,000,00000E00,003,28578E-40,001,62932E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.6 jsim0,00000E00,001,04746E-6100,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00-1,67493E-81006,05027E-5100,01,57230E-8100,05,73735E-322,33,93635E-8100,00,00000E00,004,27374E-7100,07,05934E-8100,00,00000E00,003,36831E01,60E51,91674E-8100,02,31075E-13100,00,00000E00,001,04746E-6100,00,00000E00,00
0.8 BioUML0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,002,41727E-30,000,00000E00,006,42360E-10,000,00000E00,00
0.8 ByoDyn0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,002,40000E-30,000,00000E00,006,40000E-10,000,00000E00,00
0.8 MathSBML0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,002,41727E-30,000,00000E00,006,42360E-10,000,00000E00,00
0.8 Oscill8 Core0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,57836E-10,003,68953E00,001,00137E00,167,38399E-30,002,61427E-10,000,00000E00,001,64510E10,008,89829E-36360,00000E00,002,42396E-30,001,61964E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.8 SBToolbox20,00000E00,006,39940E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59080E-10,003,69500E00,009,99769E-10,007,38050E-30,002,62020E-10,000,00000E00,001,64850E10,001,20870E-30,000,00000E00,003,28610E-40,001,62920E00,002,41730E-30,000,00000E00,006,42360E-10,000,00000E00,00
0.8 SBWOdeSolver0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.8 copasi0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,002,41727E-30,000,00000E00,006,42360E-10,000,00000E00,00
0.8 edu.kgi.roadRunner0,00000E00,006,39943E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59081E-10,003,69504E00,009,99767E-10,007,38051E-30,002,62023E-10,000,00000E00,001,64847E10,001,20874E-30,000,00000E00,003,28609E-40,001,62918E00,00 - - 0,00000E00,00 - - 0,00000E00,00
0.8 jsim0,00000E00,001,04746E-6100,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00-2,63967E-81002,84705E-7100,02,88530E-9100,05,73735E-322,33,70820E-8100,00,00000E00,007,48226E-10100,0-1,91082E-81000,00000E00,003,36831E01,39E5-1,20384E-8100-6,25472E-141000,00000E00,001,04746E-6100,00,00000E00,00
1.0 BioUML0,00000E00,006,39929E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59117E-10,003,69504E00,009,99839E-10,007,38041E-30,002,62040E-10,000,00000E00,001,64859E10,001,20884E-30,000,00000E00,003,28636E-40,001,62907E00,002,41742E-30,000,00000E00,006,42346E-10,000,00000E00,00
1.0 ByoDyn0,00000E00,006,39929E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59117E-10,003,69504E00,009,99839E-10,007,38041E-30,002,62040E-10,000,00000E00,001,64859E10,001,20884E-30,000,00000E00,003,28636E-40,001,62907E00,002,40000E-30,000,00000E00,006,40000E-10,000,00000E00,00
1.0 MathSBML0,00000E00,006,39929E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,59117E-10,003,69504E00,009,99839E-10,007,38041E-30,002,62040E-10,000,00000E00,001,64859E10,001,20884E-30,000,00000E00,003,28636E-40,001,62907E00,002,41742E-30,000,00000E00,006,42346E-10,000,00000E00,00
1.0 Oscill8 Core0,00000E00,006,39929E-10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,58152E-10,003,68867E00,001,00263E00,287,38329E-30,002,61581E-10,000,00000E00,001,64625E10,001,00359E-27300,00000E00,002,73665E-30,001,61647E00,00 - - 0,00000E00,00 - - 0,00000E00,00
1.0 SBToolbox20,00000E00,006,39930E-10,000,00000E00,00