Test: BIOMD0000000021.xml - Ok

test: BIOMD0000000021.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000021.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6617834203.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Cn  Pt  CC  Mt  T1  Mp  P1  T0  P0  T2  Tt  P2 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Cn Pt CC Mt T1 Mp P1 T0 P0 T2 Tt P2
var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 MathSBML0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 Oscill8 Core0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 VCell0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 copasi0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML7,36941E-110,001,51439E-20,005,37684E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,001,51439E-20,004,18919E-40,00
0.2 ByoDyn7,36941E-110,001,51439E-20,005,37684E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,001,51439E-20,004,18919E-40,00
0.2 Jarnac7,36941E-110,00 - - 5,37684E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,00 - - 4,18919E-40,00
0.2 MathSBML7,37069E-110,00 - - 5,37689E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18920E-40,00 - - 4,18920E-40,00
0.2 Oscill8 Core7,38852E-110,00 - - 5,38466E-90,001,60728E-10,002,79635E-30,001,60728E-10,002,79635E-30,001,19291E-20,001,19291E-20,004,18989E-40,00 - - 4,18989E-40,00
0.2 SBToolbox27,42798E-110,531,51365E-20,005,17246E-93,81,60712E-10,002,79572E-30,001,60712E-10,002,79572E-30,001,19205E-20,001,19205E-20,004,19783E-40,191,51365E-20,004,19783E-40,19
0.2 SBWOdeSolver7,38262E-110,00 - - 5,38382E-90,001,60728E-10,002,79634E-30,001,60728E-10,002,79634E-30,001,19291E-20,001,19291E-20,004,18987E-40,00 - - 4,18987E-40,00
0.2 VCell7,36952E-110,00 - - 5,37688E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18920E-40,00 - - 4,18920E-40,00
0.2 copasi7,36954E-110,00 - - 5,37682E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,00 - - 4,18919E-40,00
0.2 edu.kgi.roadRunner7,36941E-110,00 - - 5,37684E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,00 - - 4,18919E-40,00
0.2 jsim7,36940E-110,001,51439E-20,005,37684E-90,001,60729E-10,002,79611E-30,001,60729E-10,002,79611E-30,001,19288E-20,001,19288E-20,004,18919E-40,001,51439E-20,004,18919E-40,00
0.4 BioUML2,26740E-80,005,24757E-20,007,40403E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,005,24757E-20,003,29400E-30,00
0.4 ByoDyn2,26740E-80,005,24757E-20,007,40403E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,005,24757E-20,003,29400E-30,00
0.4 Jarnac2,26740E-80,00 - - 7,40403E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,00 - - 3,29400E-30,00
0.4 MathSBML2,26739E-80,00 - - 7,40397E-70,002,86596E-10,001,41503E-20,002,86596E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,00 - - 3,29400E-30,00
0.4 Oscill8 Core2,26886E-80,00 - - 7,40721E-70,002,86596E-10,001,41507E-20,002,86596E-10,001,41507E-20,003,50307E-20,003,50307E-20,003,29414E-30,00 - - 3,29414E-30,00
0.4 SBToolbox22,29023E-80,945,24355E-20,007,20010E-72,82,86555E-10,001,41369E-20,002,86555E-10,001,41369E-20,003,50073E-20,003,50073E-20,003,29060E-30,105,24355E-20,003,29060E-30,10
0.4 SBWOdeSolver2,26884E-80,00 - - 7,40719E-70,002,86596E-10,001,41507E-20,002,86596E-10,001,41507E-20,003,50307E-20,003,50307E-20,003,29414E-30,00 - - 3,29414E-30,00
0.4 VCell2,26741E-80,00 - - 7,40403E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,00 - - 3,29400E-30,00
0.4 copasi2,26741E-80,00 - - 7,40401E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,00 - - 3,29400E-30,00
0.4 edu.kgi.roadRunner2,26740E-80,00 - - 7,40403E-70,002,86597E-10,001,41503E-20,002,86597E-10,001,41503E-20,003,50306E-20,003,50306E-20,003,29400E-30,00 - - 3,29400E-30,00
0.4 jsim2,26740E-80,005,24757E-20,007,40403E-70,002,86597E-10,001,41504E-20,002,86597E-10,001,41504E-20,003,50306E-20,003,50306E-20,003,29400E-30,005,24757E-20,003,29400E-30,00
0.6 BioUML4,55919E-70,001,02507E-10,009,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,001,02507E-10,009,06090E-30,00
0.6 ByoDyn4,55919E-70,001,02507E-10,009,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,001,02507E-10,009,06090E-30,00
0.6 Jarnac4,55919E-70,00 - - 9,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,00 - - 9,06090E-30,00
0.6 MathSBML4,55914E-70,00 - - 9,07135E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,00 - - 9,06090E-30,00
0.6 Oscill8 Core4,56068E-70,00 - - 9,07326E-60,003,97654E-10,003,20531E-20,003,97654E-10,003,20531E-20,006,13841E-20,006,13841E-20,009,06105E-30,00 - - 9,06105E-30,00
0.6 SBToolbox24,60017E-70,871,02429E-10,008,96546E-61,23,97601E-10,003,20220E-20,003,97601E-10,003,20220E-20,006,13531E-20,006,13531E-20,009,04699E-30,151,02429E-10,009,04699E-30,15
0.6 SBWOdeSolver4,56067E-70,00 - - 9,07324E-60,003,97653E-10,003,20531E-20,003,97653E-10,003,20531E-20,006,13841E-20,006,13841E-20,009,06105E-30,00 - - 9,06105E-30,00
0.6 VCell4,55920E-70,00 - - 9,07139E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,00 - - 9,06090E-30,00
0.6 copasi4,55919E-70,00 - - 9,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,00 - - 9,06090E-30,00
0.6 edu.kgi.roadRunner4,55919E-70,00 - - 9,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,00 - - 9,06090E-30,00
0.6 jsim4,55919E-70,001,02507E-10,009,07138E-60,003,97654E-10,003,20529E-20,003,97654E-10,003,20529E-20,006,13840E-20,006,13840E-20,009,06090E-30,001,02507E-10,009,06090E-30,00
0.8 BioUML3,19596E-60,001,59018E-10,004,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,001,59018E-10,001,69392E-20,00
0.8 ByoDyn3,19596E-60,001,59018E-10,004,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,001,59018E-10,001,69392E-20,00
0.8 Jarnac3,19596E-60,00 - - 4,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,00 - - 1,69392E-20,00
0.8 MathSBML3,19594E-60,00 - - 4,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,00 - - 1,69392E-20,00
0.8 Oscill8 Core3,19660E-60,00 - - 4,44073E-50,004,99962E-10,005,35025E-20,004,99962E-10,005,35025E-20,008,85293E-20,008,85293E-20,001,69393E-20,00 - - 1,69393E-20,00
0.8 SBToolbox23,19528E-60,001,58927E-10,004,39423E-51,04,99904E-10,005,34661E-20,004,99904E-10,005,34661E-20,008,84962E-20,008,84962E-20,001,69175E-20,131,58927E-10,001,69175E-20,13
0.8 SBWOdeSolver3,19658E-60,00 - - 4,44074E-50,004,99961E-10,005,35025E-20,004,99961E-10,005,35025E-20,008,85293E-20,008,85293E-20,001,69393E-20,00 - - 1,69393E-20,00
0.8 VCell3,19596E-60,00 - - 4,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,00 - - 1,69392E-20,00
0.8 copasi3,19596E-60,00 - - 4,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,00 - - 1,69392E-20,00
0.8 edu.kgi.roadRunner3,19596E-60,00 - - 4,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,00 - - 1,69392E-20,00
0.8 jsim3,19596E-60,001,59018E-10,004,44020E-50,004,99962E-10,005,35023E-20,004,99962E-10,005,35023E-20,008,85293E-20,008,85293E-20,001,69392E-20,001,59018E-10,001,69392E-20,00
1.0 BioUML1,30229E-50,002,18627E-10,001,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,002,18627E-10,002,62315E-20,00
1.0 ByoDyn1,30229E-50,002,18627E-10,001,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,002,18627E-10,002,62315E-20,00
1.0 Jarnac1,30229E-50,00 - - 1,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,00 - - 2,62315E-20,00
1.0 MathSBML1,30229E-50,00 - - 1,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,00 - - 2,62315E-20,00
1.0 Oscill8 Core1,30247E-50,00 - - 1,36825E-40,005,96321E-10,007,65888E-20,005,96321E-10,007,65888E-20,001,15657E-10,001,15657E-10,002,62317E-20,00 - - 2,62317E-20,00
1.0 SBToolbox21,30122E-50,002,18518E-10,001,35695E-40,825,96250E-10,007,65494E-20,005,96250E-10,007,65494E-20,001,15624E-10,001,15624E-10,002,62028E-20,112,18518E-10,002,62028E-20,11
1.0 SBWOdeSolver1,30247E-50,00 - - 1,36825E-40,005,96321E-10,007,65887E-20,005,96321E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62317E-20,00 - - 2,62317E-20,00
1.0 VCell1,30229E-50,00 - - 1,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,00 - - 2,62315E-20,00
1.0 copasi1,30229E-50,00 - - 1,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,00 - - 2,62315E-20,00
1.0 edu.kgi.roadRunner1,30229E-50,00 - - 1,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,00 - - 2,62315E-20,00
1.0 jsim1,30229E-50,002,18627E-10,001,36815E-40,005,96322E-10,007,65887E-20,005,96322E-10,007,65887E-20,001,15657E-10,001,15657E-10,002,62315E-20,002,18627E-10,002,62315E-20,00
1.2 BioUML3,84235E-50,002,79723E-10,003,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,002,79723E-10,003,65230E-20,00
1.2 ByoDyn3,84235E-50,002,79723E-10,003,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,002,79723E-10,003,65230E-20,00
1.2 Jarnac3,84235E-50,00 - - 3,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,00 - - 3,65230E-20,00
1.2 MathSBML3,84235E-50,00 - - 3,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,00 - - 3,65230E-20,00
1.2 Oscill8 Core3,84272E-50,00 - - 3,21860E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65231E-20,00 - - 3,65231E-20,00
1.2 SBToolbox23,84261E-50,002,79610E-10,003,19818E-40,636,88228E-10,001,00267E-10,006,88228E-10,001,00267E-10,001,42489E-10,001,42489E-10,003,64878E-20,002,79610E-10,003,64878E-20,00
1.2 SBWOdeSolver3,84271E-50,00 - - 3,21860E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65231E-20,00 - - 3,65231E-20,00
1.2 VCell3,84235E-50,00 - - 3,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,00 - - 3,65230E-20,00
1.2 copasi3,84235E-50,00 - - 3,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,00 - - 3,65230E-20,00
1.2 edu.kgi.roadRunner3,84235E-50,00 - - 3,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,00 - - 3,65230E-20,00
1.2 jsim3,84235E-50,002,79723E-10,003,21842E-40,006,88299E-10,001,00311E-10,006,88299E-10,001,00311E-10,001,42528E-10,001,42528E-10,003,65230E-20,002,79723E-10,003,65230E-20,00
1.4 BioUML9,18574E-50,003,41645E-10,006,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,003,41645E-10,004,76030E-20,00
1.4 ByoDyn9,18574E-50,003,41645E-10,006,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,003,41645E-10,004,76030E-20,00
1.4 Jarnac9,18574E-50,00 - - 6,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,00 - - 4,76030E-20,00
1.4 MathSBML9,18574E-50,00 - - 6,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,00 - - 4,76030E-20,00
1.4 Oscill8 Core9,18641E-50,00 - - 6,37194E-40,007,76871E-10,001,24202E-10,007,76871E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76031E-20,00 - - 4,76031E-20,00
1.4 SBToolbox29,17426E-50,123,41525E-10,006,34029E-40,497,76798E-10,001,24162E-10,007,76798E-10,001,24162E-10,001,69074E-10,001,69074E-10,004,75669E-20,003,41525E-10,004,75669E-20,00
1.4 SBWOdeSolver9,18642E-50,00 - - 6,37195E-40,007,76871E-10,001,24202E-10,007,76871E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76031E-20,00 - - 4,76031E-20,00
1.4 VCell9,18574E-50,00 - - 6,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,00 - - 4,76030E-20,00
1.4 copasi9,18574E-50,00 - - 6,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,00 - - 4,76030E-20,00
1.4 edu.kgi.roadRunner9,18574E-50,00 - - 6,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,00 - - 4,76030E-20,00
1.4 jsim9,18574E-50,003,41645E-10,006,37168E-40,007,76872E-10,001,24202E-10,007,76872E-10,001,24202E-10,001,69111E-10,001,69111E-10,004,76030E-20,003,41645E-10,004,76030E-20,00
1.6 BioUML1,89772E-40,004,04217E-10,001,12169E-30,008,62699E-10,001,48071E-10,008,62699E-10,001,48071E-10,001,95451E-10,001,95451E-10,005,93826E-20,004,04217E-10,005,93826E-20,00
1.6 ByoDyn1,89772E-40,004,04217E-10,001,12169E-30,008,62699E-10,001,48071E-10,008,62699E-10,001,48071E-10,001,95451E-10,001,95451E-10,005,93826E-20,004,04217E-10,005,93826E-20,00
1.6 Jarnac1,89772E-40,00 - - 1,12169E-30,008,62699E-10,001,48071E-10,008,62699E-10,001,48071E-10,001,95451E-10,001,95451E-10,005,93826E-20,00 - - 5,93826E-20,00
1.6 MathSBML1,89772E-40,00 - - 1,12169E-30,008,62699E-10,001,48071E-10,008,62699E-10,001,48071E-10,001,95451E-10,001,95451E-10,005,93826E-20,00 - - 5,93826E-20,00
1.6 Oscill8 Core1,89783E-40,00 - - 1,12172E-30,008,62699E-10,001,48071E-10,008,62699E-10,001,48071E-10,001,95451E-10,001,95451E-10,005,93827E-20,00 - - 5,93827E-20,00
1.6 SBToolbox21,89435E-40,184,04098E-10,001,11748E-30,388,62622E-10,001,48030E-10,008,62622E-10,001,48030E-10,001,95410E-10,001,95410E-10,005,93470E-20,004,04098E-10,005,93470E-20,00
1.6 SBWOdeSolver1,89784E-40,00 -