Test: BIOMD0000000023.xml - Ok

test: BIOMD0000000023.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000023.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6618063111.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Fru  HexP  Suc  Suc6P  Glc 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation Fru HexP Suc Suc6P Glc
var error var error var error var error var error
0.0 BioUML1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 ByoDyn1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 Jarnac1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 MathSBML1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 Oscill8 Core1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 SBToolbox21,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 SBWOdeSolver1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 copasi1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 edu.kgi.roadRunner1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.0 jsim1,00000E00,001,00000E00,001,00000E00,001,00000E00,001,00000E00,00
0.2 BioUML1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 ByoDyn1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 Jarnac1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 MathSBML1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 Oscill8 Core1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 SBToolbox21,03377E00,001,04745E00,001,08212E00,009,09980E-10,001,03187E00,00
0.2 SBWOdeSolver1,03375E00,001,04744E00,001,08208E00,009,09989E-10,001,03186E00,00
0.2 copasi1,03375E00,001,04744E00,001,08208E00,009,09989E-10,001,03186E00,00
0.2 edu.kgi.roadRunner1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.2 jsim1,03375E00,001,04744E00,001,08208E00,009,09988E-10,001,03186E00,00
0.4 BioUML1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.4 ByoDyn1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.4 Jarnac1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.4 MathSBML1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.4 Oscill8 Core1,06785E00,001,09456E00,001,16271E00,008,20957E-10,001,06404E00,00
0.4 SBToolbox21,06783E00,001,09460E00,001,16284E00,008,20817E-10,001,06404E00,00
0.4 SBWOdeSolver1,06785E00,001,09456E00,001,16270E00,008,20957E-10,001,06404E00,00
0.4 copasi1,06785E00,001,09456E00,001,16270E00,008,20957E-10,001,06404E00,00
0.4 edu.kgi.roadRunner1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.4 jsim1,06785E00,001,09456E00,001,16271E00,008,20956E-10,001,06404E00,00
0.6 BioUML1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 ByoDyn1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 Jarnac1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 MathSBML1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 Oscill8 Core1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 SBToolbox21,10230E00,001,14136E00,001,24197E00,007,32851E-10,001,09650E00,00
0.6 SBWOdeSolver1,10228E00,001,14135E00,001,24172E00,007,33075E-10,001,09653E00,00
0.6 copasi1,10228E00,001,14135E00,001,24172E00,007,33075E-10,001,09653E00,00
0.6 edu.kgi.roadRunner1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.6 jsim1,10228E00,001,14135E00,001,24172E00,007,33073E-10,001,09653E00,00
0.8 BioUML1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 ByoDyn1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 Jarnac1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 MathSBML1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 Oscill8 Core1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 SBToolbox21,13706E00,001,18782E00,001,31920E00,006,46304E-10,001,12927E00,00
0.8 SBWOdeSolver1,13703E00,001,18782E00,001,31894E00,006,46558E-10,001,12931E00,00
0.8 copasi1,13703E00,001,18782E00,001,31894E00,006,46557E-10,001,12931E00,00
0.8 edu.kgi.roadRunner1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
0.8 jsim1,13703E00,001,18782E00,001,31895E00,006,46555E-10,001,12931E00,00
1.0 BioUML1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.0 ByoDyn1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.0 Jarnac1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.0 MathSBML1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.0 Oscill8 Core1,17206E00,001,23394E00,001,39412E00,005,61690E-10,001,16237E00,00
1.0 SBToolbox21,17203E00,001,23397E00,001,39453E00,005,61231E-10,001,16234E00,00
1.0 SBWOdeSolver1,17206E00,001,23394E00,001,39411E00,005,61693E-10,001,16237E00,00
1.0 copasi1,17206E00,001,23394E00,001,39412E00,005,61691E-10,001,16237E00,00
1.0 edu.kgi.roadRunner1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.0 jsim1,17206E00,001,23394E00,001,39412E00,005,61689E-10,001,16237E00,00
1.2 BioUML1,20737E00,001,27971E00,001,46688E00,004,78860E-10,001,19567E00,00
1.2 ByoDyn1,20737E00,001,27971E00,001,46688E00,004,78860E-10,001,19567E00,00
1.2 Jarnac1,20737E00,001,27971E00,001,46688E00,004,78860E-10,001,19567E00,00
1.2 MathSBML1,20737E00,001,27971E00,001,46688E00,004,78861E-10,001,19567E00,00
1.2 Oscill8 Core1,20737E00,001,27971E00,001,46688E00,004,78861E-10,001,19567E00,00
1.2 SBToolbox21,20738E00,001,27972E00,001,46737E00,004,78341E-10,111,19570E00,00
1.2 SBWOdeSolver1,20737E00,001,27971E00,001,46688E00,004,78865E-10,001,19567E00,00
1.2 copasi1,20737E00,001,27971E00,001,46688E00,004,78863E-10,001,19567E00,00
1.2 edu.kgi.roadRunner1,20737E00,001,27971E00,001,46688E00,004,78860E-10,001,19567E00,00
1.2 jsim1,20737E00,001,27971E00,001,46688E00,004,78860E-10,001,19567E00,00
1.4 BioUML1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.4 ByoDyn1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.4 Jarnac1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.4 MathSBML1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.4 Oscill8 Core1,24293E00,001,32512E00,001,53675E00,003,98598E-10,001,22921E00,00
1.4 SBToolbox21,24295E00,001,32518E00,001,53742E00,003,97933E-10,171,22918E00,00
1.4 SBWOdeSolver1,24293E00,001,32512E00,001,53674E00,003,98603E-10,001,22921E00,00
1.4 copasi1,24293E00,001,32512E00,001,53674E00,003,98600E-10,001,22921E00,00
1.4 edu.kgi.roadRunner1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.4 jsim1,24293E00,001,32512E00,001,53675E00,003,98597E-10,001,22921E00,00
1.6 BioUML1,27871E00,001,37015E00,001,60300E00,003,21643E-10,001,26296E00,00
1.6 ByoDyn1,27871E00,001,37015E00,001,60300E00,003,21643E-10,001,26296E00,00
1.6 Jarnac1,27871E00,001,37015E00,001,60300E00,003,21643E-10,001,26296E00,00
1.6 MathSBML1,27871E00,001,37015E00,001,60300E00,003,21644E-10,001,26296E00,00
1.6 Oscill8 Core1,27871E00,001,37015E00,001,60300E00,003,21644E-10,001,26296E00,00
1.6 SBToolbox21,27871E00,001,37015E00,001,60369E00,003,20942E-10,221,26293E00,00
1.6 SBWOdeSolver1,27871E00,001,37015E00,001,60300E00,003,21650E-10,001,26296E00,00
1.6 copasi1,27871E00,001,37015E00,001,60300E00,003,21647E-10,001,26296E00,00
1.6 edu.kgi.roadRunner1,27871E00,001,37015E00,001,60300E00,003,21643E-10,001,26296E00,00
1.6 jsim1,27871E00,001,37015E00,001,60300E00,003,21643E-10,001,26296E00,00
1.8 BioUML1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
1.8 ByoDyn1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
1.8 Jarnac1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
1.8 MathSBML1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
1.8 Oscill8 Core1,31469E00,001,41480E00,001,66463E00,002,49065E-10,001,29690E00,00
1.8 SBToolbox21,31468E00,001,41480E00,001,66538E00,002,48260E-10,321,29689E00,00
1.8 SBWOdeSolver1,31469E00,001,41480E00,001,66462E00,002,49073E-10,001,29690E00,00
1.8 copasi1,31469E00,001,41480E00,001,66463E00,002,49068E-10,001,29690E00,00
1.8 edu.kgi.roadRunner1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
1.8 jsim1,31469E00,001,41480E00,001,66463E00,002,49064E-10,001,29690E00,00
2.0 BioUML1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.0 ByoDyn1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.0 Jarnac1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.0 MathSBML1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.0 Oscill8 Core1,35083E00,001,45905E00,001,72014E00,001,82401E-10,001,33098E00,00
2.0 SBToolbox21,35084E00,001,45906E00,001,72098E00,001,81552E-10,461,33096E00,00
2.0 SBWOdeSolver1,35083E00,001,45905E00,001,72013E00,001,82407E-10,001,33098E00,00
2.0 copasi1,35083E00,001,45905E00,001,72014E00,001,82402E-10,001,33098E00,00
2.0 edu.kgi.roadRunner1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.0 jsim1,35083E00,001,45905E00,001,72014E00,001,82399E-10,001,33098E00,00
2.2 BioUML1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.2 ByoDyn1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.2 Jarnac1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.2 MathSBML1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.2 Oscill8 Core1,38709E00,001,50290E00,001,76742E00,001,23819E-10,001,36518E00,00
2.2 SBToolbox21,38710E00,001,50292E00,001,76824E00,001,22942E-10,711,36523E00,00
2.2 SBWOdeSolver1,38709E00,001,50290E00,001,76741E00,001,23824E-10,001,36518E00,00
2.2 copasi1,38709E00,001,50290E00,001,76742E00,001,23819E-10,001,36518E00,00
2.2 edu.kgi.roadRunner1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.2 jsim1,38709E00,001,50290E00,001,76742E00,001,23817E-10,001,36518E00,00
2.4 BioUML1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.4 ByoDyn1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.4 Jarnac1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.4 MathSBML1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.4 Oscill8 Core1,42341E00,001,54634E00,001,80381E00,007,60616E-20,001,39946E00,00
2.4 SBToolbox21,42344E00,001,54637E00,001,80454E00,007,52650E-21,01,39949E00,00
2.4 SBWOdeSolver1,42341E00,001,54634E00,001,80380E00,007,60653E-20,001,39946E00,00
2.4 copasi1,42341E00,001,54634E00,001,80381E00,007,60601E-20,001,39946E00,00
2.4 edu.kgi.roadRunner1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.4 jsim1,42341E00,001,54634E00,001,80381E00,007,60585E-20,001,39946E00,00
2.6 BioUML1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.6 ByoDyn1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.6 Jarnac1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.6 MathSBML1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.6 Oscill8 Core1,45972E00,001,58936E00,001,82693E00,004,15851E-20,001,43374E00,00
2.6 SBToolbox21,45973E00,001,58935E00,001,82749E00,004,09730E-21,51,43376E00,00
2.6 SBWOdeSolver1,45972E00,001,58936E00,001,82693E00,004,15869E-20,001,43374E00,00
2.6 copasi1,45972E00,001,58936E00,001,82693E00,004,15830E-20,001,43374E00,00
2.6 edu.kgi.roadRunner1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.6 jsim1,45972E00,001,58936E00,001,82693E00,004,15818E-20,001,43374E00,00
2.8 BioUML1,49595E00,001,63199E00,001,83669E00,002,05864E-20,001,46797E00,00
2.8 ByoDyn1,49595E00,001,63199E00,001,83669E00,002,05864E-20,001,46797E00,00
2.8 Jarnac1,49595E00,001,63199E00,001,83669E00,002,05864E-20,001,46797E00,00
2.8 MathSBML1,49595E00,001,63199E00,001,83669E00,002,05865E-20,001,46797E00,00
2.8 Oscill8 Core1,49595E00,001,63199E00,001,83668E00,002,05891E-20,001,46797E00,00
2.8 SBToolbox21,49600E00,001,63201E00,001,83704E00,002,02104E-21,81,46802E00,00
2.8 SBWOdeSolver1,49595E00,001,63199E00,001,83668E00,002,05901E-20,001,46797E00,00
2.8 copasi1,49595E00,001,63199E00,001,83669E00,002,05871E-20,001,46797E00,00
2.8 edu.kgi.roadRunner1,49595E00,001,63199E00,001,83669E00,002,05864E-20,001,46797E00,00
2.8 jsim1,49595E00,001,63199E00,001,83669E00,002,05864E-20,001,46797E00,00
3.0 BioUML1,53204E00,001,67422E00,001,83627E00,009,94931E-30,001,50210E00,00
3.0 ByoDyn1,53204E00,001,67422E00,001,83627E00,009,94931E-30,001,50210E00,00
3.0 Jarnac1,53204E00,001,67422E00,001,83627E00,009,94931E-30,001,50210E00,00
3.0 MathSBML1,53204E00,001,67422E00,001,83627E00,009,94930E-30,001,50210E00,00
3.0 Oscill8 Core1,53204E00,001,67422E00,001,83627E00,009,95084E-30,001,50210E00,00
3.0 SBToolbox21,53206E00,001,67427E00,001,83646E00,009,75511E-32,01,50209E00,00
3.0 SBWOdeSolver1,53204E00,001,67422E00,001,83627E00,009,95147E-30,001,50210E00,00
3.0 copasi1,53204E00,001,67422E00,001,83627E00,009,94961E-30,001,50210E00,00
3.0 edu.kgi.roadRunner1,53204E00,001,67422E00,001,83627E00,009,94931E-30,001,50210E00,00
3.0 jsim1,53204E00,001,67422E00,001,83627E00,009,94931E-30,001,50210E00,00
3.2 BioUML1,56794E00,001,71607E00,001,83011E00,005,29463E-30,001,53609E00,00
3.2 ByoDyn1,56794E00,001,71607E00,001,83011E00,005,29463E-30,001,53609E00,00
3.2 Jarnac1,56794E00,001,71607E00,001,83011E00,005,29463E-30,001,53609E00,00
3.2 MathSBML1,56794E00,001,71607E00,001,83011E00,005,29461E-30,001,53609E00,00
3.2 Oscill8 Core1,56794E00,001,71607E00,001,83011E00,005,29535E-30,001,53609E00,00
3.2 SBToolbox21,56792E00,001,71613E00,001,83013E00,005,20411E-31,71,53606E00,00
3.2 SBWOdeSolver1,56794E00,001,71607E00,001,83011E00,005,29562E-30,001,53609E00,00
3.2 copasi1,56794E00,001,71607E00,001,83011E00,005,29474E-30,001,53609E00,00
3.2 edu.kgi.roadRunner1,56794E00,001,71607E00,001,83011E00,005,29463E-30,001,53609E00,00
3.2 jsim1,56794E00,001,71607E00,001,83011E00,005,29463E-30,001,53609E00,00
3.4 BioUML1,60364E00,001,75754E00,001,82142E00,003,44373E-30,001,56992E00,00
3.4 ByoDyn1,60364E00,001,75754E00,001,82142E00,003,44373E-30,001,56992E00,00
3.4 Jarnac1,60364E00,001,75754E00,001,82142E00,003,44373E-30,001,56992E00,00
3.4 MathSBML1,60364E00,001,75754E00,001,82142E00,003,44372E-30,001,56992E00,00
3.4 Oscill8 Core1,60364E00,001,75754E00,001,82142E00,003,44404E-30,001,56992E00,00
3.4 SBToolbox21,60369E00,001,75759E00,001,82144E00,003,40336E-31,21,56992E00,00
3.4 SBWOdeSolver1,60364E00,001,75754E00,001,82142E00,003,44412E-30,001,56992E00,00
3.4 copasi1,60364E00,001,75754E00,001,82142E00,003,44378E-30,001,56992E00,00
3.4 edu.kgi.roadRunner1,60364E00,001,75754E00,001,82142E00,003,44373E-30,001,56992E00,00
3.4 jsim1,60364E00,001,75754E00,001,82142E00,003,44373E-30,001,56992E00,00
3.6 BioUML1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.6 ByoDyn1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.6 Jarnac1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.6 MathSBML1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.6 Oscill8 Core1,63912E00,001,79864E00,001,81183E00,002,76411E-30,001,60359E00,00
3.6 SBToolbox21,63915E00,001,79864E00,001,81178E00,002,74629E-30,641,60359E00,00
3.6 SBWOdeSolver1,63912E00,001,79864E00,001,81183E00,002,76411E-30,001,60359E00,00
3.6 copasi1,63912E00,001,79864E00,001,81183E00,002,76401E-30,001,60359E00,00
3.6 edu.kgi.roadRunner1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.6 jsim1,63912E00,001,79864E00,001,81183E00,002,76399E-30,001,60359E00,00
3.8 BioUML1,67438E00,001,83936E00,001,80204E00,002,54860E-30,001,63711E00,00
3.8 ByoDyn1,67438E00,001,83936E00,001,80204E00,002,54860E-30,001,63711E00,00
3.8 Jarnac1,67438E00,001,83936E00,001,80204E00,002,54860E-30,001,63711E00,00
3.8 MathSBML1,67438E00,001,83936E00,001,80204E00,002,54860E-30,001,63711E00,00
3.8 Oscill8 Core1,67438E00,001,83936E00,001,80204E00,002,54865E-30,001,63711E00,00
3.8 SBToolbox21,67442E00,001,83940E00,001,80199E00,002,54045E-30,321,63715E00,00
3.8 SBWOdeSolver1,67438E00,001,83936E00,001,80205E00,002,54864E-30,001,63711E00,00
3.8