Test: BIOMD0000000024.xml - Ok


test: BIOMD0000000024.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000024.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6618241436.png


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables:
Simulators: BioUML  ByoDyn  Oscill8 Core  edu.kgi.roadRunner  jsim 
timesimulation P M
var error var error
0.0 BioUML1,00000E00,001,00000E00,00
0.0 ByoDyn1,00000E-150,001,00000E-150,00
0.0 Oscill8 Core1,00000E-150,001,00000E-150,00
0.0 edu.kgi.roadRunner1,00000E00,001,00000E00,00
0.0 jsim1,00000E-150,001,00000E-150,00
0.2 BioUML9,58870E-10,001,05887E00,94
0.2 ByoDyn9,58869E-164,11,95861E-10,00
0.2 Oscill8 Core1,00000E-150,001,20000E-150,00
0.2 edu.kgi.roadRunner1,17063E022,11,04904E00,00
0.2 jsim1,00000E-150,001,20000E-150,00
0.4 BioUML9,19431E-10,001,11942E03,5
0.4 ByoDyn9,19430E-168,13,83666E-10,00
0.4 Oscill8 Core1,00000E-150,001,40000E-150,00
0.4 edu.kgi.roadRunner1,36019E047,91,08135E00,00
0.4 jsim1,00000E-150,001,40000E-150,00
0.6 BioUML8,81614E-10,001,18156E07,5
0.6 ByoDyn8,81614E-1611,85,63743E-10,00
0.6 Oscill8 Core1,00000E-150,001,60000E-150,00
0.6 edu.kgi.roadRunner1,55900E076,81,09954E00,00
0.6 jsim1,00000E-150,001,60000E-150,00
0.8 BioUML8,45353E-10,001,24520E012,5
0.8 ByoDyn8,45353E-1615,57,36412E-10,00
0.8 Oscill8 Core1,00000E-150,001,80000E-150,00
0.8 edu.kgi.roadRunner1,75834E01081,10657E00,00
0.8 jsim1,00000E-150,001,80000E-150,00
1.0 BioUML8,10584E-10,001,31021E018,6
1.0 ByoDyn8,10584E-1618,99,01980E-10,00
1.0 Oscill8 Core1,00000E-150,002,00000E-150,00
1.0 edu.kgi.roadRunner1,95133E01411,10517E00,00
1.0 jsim1,00000E-150,002,00000E-150,00
1.2 BioUML7,77245E-10,001,37649E025,4
1.2 ByoDyn7,77245E-1622,31,06074E00,00
1.2 Oscill8 Core1,00000E-150,002,20000E-150,00
1.2 edu.kgi.roadRunner2,13304E01741,09759E00,00
1.2 jsim1,00000E-150,002,20000E-150,00
1.4 BioUML7,45277E-10,001,44391E019,0
1.4 ByoDyn7,45277E-1625,51,21297E00,00
1.4 Oscill8 Core1,00000E-150,002,40000E-150,00
1.4 edu.kgi.roadRunner2,30024E02091,08555E00,00
1.4 jsim1,00000E-150,002,40000E-150,00
1.6 BioUML7,14620E-10,001,51228E011,3
1.6 ByoDyn7,14624E-1628,51,35893E00,00
1.6 Oscill8 Core1,00000E-150,002,60000E-150,00
1.6 edu.kgi.roadRunner2,45108E02431,07036E00,00
1.6 jsim1,00000E-150,002,60000E-150,00
1.8 BioUML6,85127E-10,001,58022E05,4
1.8 ByoDyn6,85232E-1631,51,49890E00,00
1.8 Oscill8 Core1,00000E-150,002,80000E-150,00
1.8 edu.kgi.roadRunner2,58472E02771,05300E00,00
1.8 jsim1,00000E-150,002,80000E-150,00
2.0 BioUML6,56732E-10,001,64738E00,87
2.0 ByoDyn6,57048E-1634,31,63310E00,00
2.0 Oscill8 Core1,00000E-150,003,00000E-150,00
2.0 edu.kgi.roadRunner2,70106E03111,03420E00,00
2.0 jsim1,00000E-150,003,00000E-150,00
2.2 BioUML6,29420E-10,001,71411E00,00
2.2 ByoDyn6,30024E-1637,01,76179E02,8
2.2 Oscill8 Core1,00000E-150,003,20000E-150,00
2.2 edu.kgi.roadRunner2,80049E03451,01450E00,00
2.2 jsim1,00000E-150,003,20000E-150,00
2.4 BioUML6,03174E-10,001,78073E00,00
2.4 ByoDyn6,04111E-1639,61,88519E05,9
2.4 Oscill8 Core1,00000E-150,003,40000E-150,00
2.4 edu.kgi.roadRunner2,88377E03789,94334E-10,00
2.4 jsim1,00000E-150,003,40000E-150,00
2.6 BioUML5,77976E-10,001,84750E00,00
2.6 ByoDyn5,79263E-1642,12,00351E08,4
2.6 Oscill8 Core1,00000E-150,003,60000E-150,00
2.6 edu.kgi.roadRunner2,95184E04119,74008E-10,00
2.6 jsim1,00000E-150,003,60000E-150,00
2.8 BioUML5,53804E-10,001,91466E00,00
2.8 ByoDyn5,55438E-1644,52,11696E010,6
2.8 Oscill8 Core1,00000E-150,003,80000E-150,00
2.8 edu.kgi.roadRunner3,00580E04439,53769E-10,00
2.8 jsim1,00000E-150,003,80000E-150,00
3.0 BioUML5,30635E-10,001,98239E00,00
3.0 ByoDyn5,32593E-1646,72,22575E012,3
3.0 Oscill8 Core1,00000E-150,004,00000E-150,00
3.0 edu.kgi.roadRunner3,04679E04749,33808E-10,00
3.0 jsim1,00000E-150,004,00000E-150,00
3.2 BioUML5,08444E-10,002,05086E00,00
3.2 ByoDyn5,10687E-1648,92,33006E013,6
3.2 Oscill8 Core1,00000E-150,004,20000E-150,00
3.2 edu.kgi.roadRunner3,07597E05059,14272E-10,00
3.2 jsim1,00000E-150,004,20000E-150,00
3.4 BioUML4,87205E-10,002,12018E00,00
3.4 ByoDyn4,89683E-1651,02,43008E014,6
3.4 Oscill8 Core1,00000E-150,004,40000E-150,00
3.4 edu.kgi.roadRunner3,09448E05358,95278E-10,00
3.4 jsim1,00000E-150,004,40000E-150,00
3.6 BioUML4,66889E-10,002,19042E00,00
3.6 ByoDyn4,69542E-1653,02,52599E015,3
3.6 Oscill8 Core1,00000E-150,004,60000E-150,00
3.6 edu.kgi.roadRunner3,10342E05658,76918E-10,00
3.6 jsim1,00000E-150,004,60000E-150,00
3.8 BioUML4,47466E-10,002,26163E00,00
3.8 ByoDyn4,50229E-1655,02,61796E015,8
3.8 Oscill8 Core1,00000E-150,004,80000E-150,00
3.8 edu.kgi.roadRunner3,10386E05948,59263E-10,00
3.8 jsim1,00000E-150,004,80000E-150,00
4.0 BioUML4,28906E-10,002,33380E00,00
4.0 ByoDyn4,31711E-1656,82,70614E016,0
4.0 Oscill8 Core1,00000E-150,005,00000E-150,00
4.0 edu.kgi.roadRunner3,09679E06228,42372E-10,00
4.0 jsim1,00000E-150,005,00000E-150,00
4.2 BioUML4,11177E-10,002,40690E00,00
4.2 ByoDyn4,13955E-1658,62,79069E015,9
4.2 Oscill8 Core1,00000E-150,005,20000E-150,00
4.2 edu.kgi.roadRunner3,08313E06508,26289E-10,00
4.2 jsim1,00000E-150,005,20000E-150,00
4.4 BioUML3,94246E-10,002,48085E00,00
4.4 ByoDyn3,96928E-1660,32,87177E015,8
4.4 Oscill8 Core1,00000E-150,005,40000E-150,00
4.4 edu.kgi.roadRunner3,06374E06778,11049E-10,00
4.4 jsim1,00000E-150,005,40000E-150,00
4.6 BioUML3,78080E-10,002,55555E00,00
4.6 ByoDyn1,23888E-20,002,94950E015,4
4.6 Oscill8 Core1,00000E-150,005,60000E-150,00
4.6 edu.kgi.roadRunner3,03943E07047,96680E-10,00
4.6 jsim1,00000E-150,005,60000E-150,00
4.8 BioUML3,62645E-10,002,63085E00,00
4.8 ByoDyn5,10398E-20,003,02385E014,9
4.8 Oscill8 Core1,00000E-150,005,80000E-150,00
4.8 edu.kgi.roadRunner3,01093E07307,83203E-10,00
4.8 jsim1,00000E-150,005,80000E-150,00
5.0 BioUML3,47908E-10,002,70657E00,00
5.0 ByoDyn1,32064E-10,003,09374E014,3
5.0 Oscill8 Core1,00000E-150,006,00000E-150,00
5.0 edu.kgi.roadRunner2,97890E07567,70634E-10,00
5.0 jsim1,00000E-150,006,00000E-150,00
5.2 BioUML3,33832E-10,002,78250E00,00
5.2 ByoDyn2,77204E-10,003,15458E013,4
5.2 Oscill8 Core1,00000E-150,006,20000E-150,00
5.2 edu.kgi.roadRunner2,94396E07827,58984E-10,00
5.2 jsim1,00000E-150,006,20000E-150,00
5.4 BioUML3,20386E-10,002,85838E00,00
5.4 ByoDyn5,10756E-10,003,19482E011,8
5.4 Oscill8 Core1,00000E-150,006,40000E-150,00
5.4 edu.kgi.roadRunner2,90667E04697,48260E-10,00
5.4 jsim1,00000E-150,006,40000E-150,00
5.6 BioUML3,07533E-10,002,93393E00,00
5.6 ByoDyn8,51986E-10,003,19853E09,0
5.6 Oscill8 Core1,00000E-150,006,60000E-150,00
5.6 edu.kgi.roadRunner2,86754E02377,38465E-10,00
5.6 jsim1,00000E-150,006,60000E-150,00
5.8 BioUML2,95240E-10,003,00882E00,00
5.8 ByoDyn1,32569E00,003,15839E05,0
5.8 Oscill8 Core1,00000E-150,006,80000E-150,00
5.8 edu.kgi.roadRunner2,82703E01137,29599E-10,00
5.8 jsim1,00000E-150,006,80000E-150,00
6.0 BioUML2,83474E-10,003,08272E00,00
6.0 ByoDyn1,95064E00,003,08308E00,00
6.0 Oscill8 Core1,00000E-150,007,00000E-150,00
6.0 edu.kgi.roadRunner2,78555E042,87,21661E-10,00
6.0 jsim1,00000E-150,007,00000E-150,00
6.2 BioUML2,72201E-10,003,15522E05,6
6.2 ByoDyn2,74560E00,002,98720E00,00
6.2 Oscill8 Core1,00000E-150,007,20000E-150,00
6.2 edu.kgi.roadRunner2,74349E00,007,14643E-10,00
6.2 jsim1,00000E-150,007,20000E-150,00
6.4 BioUML2,61391E-10,003,22590E011,9
6.4 ByoDyn3,72618E037,92,88185E00,00
6.4 Oscill8 Core1,00000E-150,007,40000E-150,00
6.4 edu.kgi.roadRunner2,70120E00,007,08538E-10,00
6.4 jsim1,00000E-150,007,40000E-150,00
6.6 BioUML2,51011E-10,003,29432E018,8
6.6 ByoDyn4,91064E084,72,77352E00,00
6.6 Oscill8 Core1,00000E-150,007,60000E-150,00
6.6 edu.kgi.roadRunner2,65897E00,007,03335E-10,00
6.6 jsim1,00000E-150,007,60000E-150,00
6.8 BioUML2,41033E-10,003,35999E026,1
6.8 ByoDyn6,31257E01412,66559E00,00
6.8 Oscill8 Core1,00000E-150,007,80000E-150,00
6.8 edu.kgi.roadRunner2,61710E00,006,99018E-10,00
6.8 jsim1,00000E-150,007,80000E-150,00
7.0 BioUML2,31428E-10,003,42240E033,7
7.0 ByoDyn7,93730E02082,55980E00,00
7.0 Oscill8 Core1,00000E-150,008,00000E-150,00
7.0 edu.kgi.roadRunner2,57584E00,006,95571E-10,00
7.0 jsim1,00000E-150,008,00000E-150,00
7.2 BioUML2,22168E-10,003,48098E036,0
7.2 ByoDyn7,93730E02132,55980E00,00
7.2 Oscill8 Core1,00000E-150,008,20000E-150,00
7.2 edu.kgi.roadRunner2,53542E00,006,92974E-10,00
7.2 jsim1,00000E-150,008,20000E-150,00
7.4 BioUML2,13228E-10,003,53516E038,1
7.4 ByoDyn7,93730E02182,55980E00,00
7.4 Oscill8 Core1,00000E-150,008,40000E-150,00
7.4 edu.kgi.roadRunner2,49604E00,006,91201E-10,00
7.4 jsim1,00000E-150,008,40000E-150,00
7.6 BioUML2,04585E-10,003,58434E040,0
7.6 ByoDyn7,93730E02232,55980E00,00
7.6 Oscill8 Core1,00000E-150,008,60000E-150,00
7.6 edu.kgi.roadRunner2,45790E00,006,90226E-10,00
7.6 jsim1,00000E-150,008,60000E-150,00
7.8 BioUML1,96218E-10,003,62787E041,7
7.8 ByoDyn7,93730E02282,55980E00,00
7.8 Oscill8 Core1,00000E-150,008,80000E-150,00
7.8 edu.kgi.roadRunner2,42117E00,006,90019E-10,00
7.8 jsim1,00000E-150,008,80000E-150,00
8.0 BioUML1,88147E-10,003,66754E043,3
8.0 ByoDyn7,93730E02332,55980E00,00
8.0 Oscill8 Core1,00000E-150,009,00000E-150,00
8.0 edu.kgi.roadRunner2,38599E00,006,90544E-10,00
8.0 jsim1,00000E-150,009,00000E-150,00
8.2 BioUML1,80408E-10,003,70612E044,8
8.2 ByoDyn7,93730E02372,55980E00,00
8.2 Oscill8 Core1,00000E-150,009,20000E-150,00
8.2 edu.kgi.roadRunner2,35250E00,006,91764E-10,00
8.2 jsim1,00000E-150,009,20000E-150,00
8.4 BioUML1,72987E-10,003,74361E046,2
8.4 ByoDyn7,93730E02422,55980E00,00
8.4 Oscill8 Core1,00000E-150,009,40000E-150,00
8.4 edu.kgi.roadRunner2,32083E00,006,93637E-10,00
8.4 jsim1,00000E-150,009,40000E-150,00
8.6 BioUML1,65871E-10,003,78003E047,7
8.6 ByoDyn7,93730E02462,55980E00,00
8.6 Oscill8 Core1,00000E-150,009,60000E-150,00
8.6 edu.kgi.roadRunner2,29108E00,006,96118E-10,00
8.6 jsim1,00000E-150,009,60000E-150,00
8.8 BioUML1,59049E-10,003,81539E049,1
8.8 ByoDyn7,93730E02512,55980E00,00
8.8 Oscill8 Core1,00000E-150,009,80000E-150,00
8.8 edu.kgi.roadRunner2,26334E00,006,99157E-10,00
8.8 jsim1,00000E-150,009,80000E-150,00
9.0 BioUML1,52508E-10,003,84968E050,4
9.0 ByoDyn7,93730E02552,55980E00,00
9.0 Oscill8 Core1,00000E-150,001,00000E-140,00
9.0 edu.kgi.roadRunner2,23768E00,007,02701E-10,00
9.0 jsim1,00000E-150,001,00000E-140,00
9.2 BioUML1,46236E-10,003,88293E051,7
9.2 ByoDyn7,93730E02582,55980E00,00
9.2 Oscill8 Core1,00000E-150,001,02000E-140,00
9.2 edu.kgi.roadRunner2,21418E00,007,06697E-10,00
9.2 jsim1,00000E-150,001,02000E-140,00
9.4 BioUML1,40222E-10,003,91515E052,9
9.4 ByoDyn7,93730E02622,55980E00,00
9.4 Oscill8 Core1,00000E-150,001,04000E-140,00
9.4 edu.kgi.roadRunner2,19288E00,007,11086E-10,00
9.4 jsim1,00000E-150,001,04000E-140,00
9.6 BioUML1,34455E-10,003,94636E054,2
9.6 ByoDyn7,93730E02652,55980E00,00
9.6 Oscill8 Core1,00000E-150,001,06000E-140,00
9.6 edu.kgi.roadRunner2,17381E00,007,15808E-10,00
9.6 jsim1,00000E-150,001,06000E-140,00
9.8 BioUML1,28925E-10,003,97656E055,3
9.8 ByoDyn7,93730E02682,55980E00,00
9.8 Oscill8 Core1,00000E-150,001,08000E-140,00
9.8 edu.kgi.roadRunner2,15699E00,007,20801E-10,00
9.8 jsim1,00000E-150,001,08000E-140,00
Max relative error782 55,3