Test: BIOMD0000000026.xml - Ok

test: BIOMD0000000026.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000026.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Mp_MKP3_dep  M_MAPKK  Mpp  Mp_MKP3  Mpp_MKP3  M_MKP3  M  MKP3  Mp_MAPKK  Mp  MAPKK 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Mp_MKP3_dep M_MAPKK Mpp Mp_MKP3 Mpp_MKP3 M_MKP3 M MKP3 Mp_MAPKK Mp MAPKK
var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,005,00000E20,001,00000E20,000,00000E00,000,00000E00,005,00000E10,00
0.2 BioUML3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.2 ByoDyn3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.2 Jarnac3,15223E-30,003,94155E10,008,08232E-40,003,06655E-30,001,89605E-40,009,71008E00,004,50822E20,009,02835E10,007,56959E-40,004,48077E-20,001,05838E10,00
0.2 MathSBML3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.2 SBToolbox23,15215E-30,003,94233E10,008,09734E-40,183,06632E-30,001,90431E-40,429,71018E00,004,50811E20,009,02838E10,007,57943E-40,134,47961E-20,001,05757E10,00
0.2 SBWOdeSolver3,15242E-30,003,94148E10,008,08258E-40,003,06674E-30,001,89630E-40,009,71005E00,004,50822E20,009,02835E10,007,56938E-40,004,48079E-20,001,05844E10,00
0.2 VCell3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.2 copasi3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.2 edu.kgi.roadRunner3,15221E-30,003,94154E10,008,08239E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56964E-40,004,48078E-20,001,05839E10,00
0.2 jsim3,15221E-30,003,94154E10,008,08242E-40,003,06654E-30,001,89602E-40,009,71008E00,004,50822E20,009,02835E10,007,56963E-40,004,48078E-20,001,05839E10,00
0.4 BioUML1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.4 ByoDyn1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.4 Jarnac1,43521E-20,004,41121E10,002,54501E-30,001,35457E-20,001,32726E-30,001,78738E10,004,37877E20,008,20969E10,001,12507E-30,001,04145E-10,005,88679E00,00
0.4 MathSBML1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.4 SBToolbox21,43507E-20,004,41170E10,002,54658E-30,001,35441E-20,001,32915E-30,141,78738E10,004,37868E20,008,20963E10,001,12506E-30,001,04138E-10,005,88185E00,00
0.4 SBWOdeSolver1,43521E-20,004,41119E10,002,54504E-30,001,35458E-20,001,32728E-30,001,78738E10,004,37877E20,008,20969E10,001,12509E-30,001,04145E-10,005,88696E00,00
0.4 VCell1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.4 copasi1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.4 edu.kgi.roadRunner1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88685E00,00
0.4 jsim1,43519E-20,004,41120E10,002,54504E-30,001,35456E-20,001,32724E-30,001,78739E10,004,37877E20,008,20969E10,001,12508E-30,001,04146E-10,005,88683E00,00
0.6 BioUML3,04325E-20,004,46774E10,004,48487E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.6 ByoDyn3,04325E-20,004,46774E10,004,48487E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.6 Jarnac3,04329E-20,004,46774E10,004,48496E-30,002,78521E-20,003,28202E-30,002,49933E10,004,30105E20,007,49451E10,001,52172E-30,001,56402E-10,005,32108E00,00
0.6 MathSBML3,04325E-20,004,46774E10,004,48487E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.6 SBToolbox23,04319E-20,004,46806E10,004,48465E-30,002,78508E-20,003,28541E-30,102,49939E10,004,30101E20,007,49442E10,001,52094E-30,001,56402E-10,005,31773E00,00
0.6 SBWOdeSolver3,04326E-20,004,46774E10,004,48492E-30,002,78520E-20,003,28190E-30,002,49934E10,004,30105E20,007,49450E10,001,52172E-30,001,56403E-10,005,32106E00,00
0.6 VCell3,04325E-20,004,46774E10,004,48487E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.6 copasi3,04325E-20,004,46774E10,004,48488E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.6 edu.kgi.roadRunner3,04325E-20,004,46774E10,004,48488E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32105E00,00
0.6 jsim3,04325E-20,004,46774E10,004,48487E-30,002,78519E-20,003,28186E-30,002,49935E10,004,30105E20,007,49449E10,001,52172E-30,001,56403E-10,005,32104E00,00
0.8 BioUML4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94974E-30,003,12491E10,004,23746E20,006,86535E10,002,00284E-30,002,03395E-10,005,30291E00,00
0.8 ByoDyn4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94974E-30,003,12491E10,004,23746E20,006,86535E10,002,00284E-30,002,03395E-10,005,30291E00,00
0.8 Jarnac4,84489E-20,004,46951E10,007,01139E-30,004,30234E-20,005,95021E-30,003,12487E10,004,23746E20,006,86539E10,002,00284E-30,002,03393E-10,005,30292E00,00
0.8 MathSBML4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94974E-30,003,12491E10,004,23746E20,006,86535E10,002,00284E-30,002,03395E-10,005,30291E00,00
0.8 SBToolbox24,84516E-20,004,46962E10,007,00621E-30,004,30278E-20,005,95562E-30,003,12504E10,004,23744E20,006,86527E10,002,00173E-30,002,03388E-10,005,30144E00,00
0.8 SBWOdeSolver4,84484E-20,004,46951E10,007,01121E-30,004,30234E-20,005,94981E-30,003,12490E10,004,23746E20,006,86535E10,002,00284E-30,002,03394E-10,005,30291E00,00
0.8 VCell4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94974E-30,003,12491E10,004,23746E20,006,86535E10,002,00284E-30,002,03395E-10,005,30291E00,00
0.8 copasi4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94975E-30,003,12491E10,004,23746E20,006,86535E10,002,00285E-30,002,03395E-10,005,30291E00,00
0.8 edu.kgi.roadRunner4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94975E-30,003,12491E10,004,23746E20,006,86535E10,002,00285E-30,002,03395E-10,005,30292E00,00
0.8 jsim4,84484E-20,004,46951E10,007,01114E-30,004,30235E-20,005,94974E-30,003,12491E10,004,23746E20,006,86535E10,002,00284E-30,002,03395E-10,005,30291E00,00
1.0 BioUML6,67369E-20,004,46419E10,001,02234E-20,005,75789E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 ByoDyn6,67369E-20,004,46419E10,001,02234E-20,005,75789E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 Jarnac6,67371E-20,004,46419E10,001,02238E-20,005,75784E-20,009,35049E-30,003,67632E10,004,18201E20,006,31032E10,002,49856E-30,002,47741E-10,005,35561E00,00
1.0 MathSBML6,67369E-20,004,46419E10,001,02234E-20,005,75789E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 SBToolbox26,67485E-20,004,46423E10,001,02142E-20,005,75939E-20,009,35705E-30,003,67651E10,004,18196E20,006,31011E10,002,49781E-30,002,47721E-10,005,35520E00,00
1.0 SBWOdeSolver6,67368E-20,004,46419E10,001,02235E-20,005,75788E-20,009,34964E-30,003,67638E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 VCell6,67369E-20,004,46419E10,001,02234E-20,005,75789E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 copasi6,67369E-20,004,46419E10,001,02234E-20,005,75789E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.0 edu.kgi.roadRunner6,67369E-20,004,46419E10,001,02234E-20,005,75790E-20,009,34957E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35562E00,00
1.0 jsim6,67369E-20,004,46419E10,001,02234E-20,005,75790E-20,009,34956E-30,003,67639E10,004,18200E20,006,31025E10,002,49859E-30,002,47744E-10,005,35561E00,00
1.2 BioUML8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 ByoDyn8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 Jarnac8,44316E-20,004,45837E10,001,41382E-20,007,08899E-20,001,34684E-20,004,16366E10,004,13303E20,005,81946E10,002,99506E-30,002,90996E-10,005,41330E00,00
1.2 MathSBML8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 SBToolbox28,44554E-20,004,45834E10,001,41234E-20,007,09172E-20,001,34762E-20,004,16394E10,004,13298E20,005,81917E10,002,99431E-30,002,90952E-10,005,41316E00,00
1.2 SBWOdeSolver8,44318E-20,004,45837E10,001,41376E-20,007,08909E-20,001,34670E-20,004,16375E10,004,13302E20,005,81937E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 VCell8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 copasi8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.2 edu.kgi.roadRunner8,44320E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41332E00,00
1.2 jsim8,44319E-20,004,45837E10,001,41375E-20,007,08911E-20,001,34669E-20,004,16376E10,004,13302E20,005,81936E10,002,99510E-30,002,90999E-10,005,41331E00,00
1.4 BioUML1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 ByoDyn1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 Jarnac1,01100E-10,004,45295E10,001,87875E-20,008,27559E-20,001,82627E-20,004,59526E10,004,08960E20,005,38453E10,003,49444E-30,003,33935E-10,005,46702E00,00
1.4 MathSBML1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 SBToolbox21,01137E-10,004,45294E10,001,87679E-20,008,27937E-20,001,82713E-20,004,59566E10,004,08958E20,005,38408E10,003,49349E-30,003,33879E-10,005,46704E00,00
1.4 SBWOdeSolver1,01101E-10,004,45295E10,001,87865E-20,008,27576E-20,001,82604E-20,004,59539E10,004,08958E20,005,38440E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 VCell1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 copasi1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 edu.kgi.roadRunner1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.4 jsim1,01101E-10,004,45295E10,001,87864E-20,008,27578E-20,001,82603E-20,004,59540E10,004,08958E20,005,38439E10,003,49449E-30,003,33939E-10,005,46704E00,00
1.6 BioUML1,16547E-10,004,44801E10,002,42181E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.6 ByoDyn1,16547E-10,004,44801E10,002,42181E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.6 Jarnac1,16545E-10,004,44801E10,002,42196E-20,009,31766E-20,002,36863E-20,004,97821E10,004,05099E20,004,99845E10,003,99924E-30,003,76907E-10,005,51590E00,00
1.6 MathSBML1,16547E-10,004,44801E10,002,42181E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.6 SBToolbox21,16592E-10,004,44803E10,002,41934E-20,109,32229E-20,002,36972E-20,004,97870E10,004,05099E20,004,99793E10,003,99814E-30,003,76836E-10,005,51593E00,00
1.6 SBWOdeSolver1,16547E-10,004,44801E10,002,42182E-20,009,31787E-20,002,36830E-20,004,97838E10,004,05098E20,004,99828E10,003,99931E-30,003,76913E-10,005,51592E00,00
1.6 VCell1,16547E-10,004,44801E10,002,42181E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.6 copasi1,16547E-10,004,44801E10,002,42181E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.6 edu.kgi.roadRunner1,16547E-10,004,44801E10,002,42181E-20,009,31791E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51593E00,00
1.6 jsim1,16547E-10,004,44801E10,002,42180E-20,009,31790E-20,002,36829E-20,004,97839E10,004,05098E20,004,99827E10,003,99932E-30,003,76913E-10,005,51592E00,00
1.8 BioUML1,30704E-10,004,44353E10,003,04833E-20,001,02246E-10,002,96904E-20,005,31877E10,004,01659E20,004,65497E10,004,51036E-30,004,20038E-10,005,56022E00,00
1.8 ByoDyn1,30704E-10,004,44353E10,003,04833E-20,001,02246E-10,002,96904E-20,005,31877E10,004,01659E20,004,65497E10,004,51036E-30,004,20038E-10,005,56022E00,00
1.8 Jarnac1,30701E-10,004,44353E10,003,04854E-20,001,02243E-10,002,96951E-20,005,31856E10,004,01661E20,004,65518E10,004,51027E-30,004,20030E-10,005,56020E00,00
1.8 MathSBML1,30704E-10,004,44353E10,003,04833E-20,001,02246E-10,002,96904E-20,005,31877E10,004,01659E20,004,65497E10,004,51036E-30,004,20038E-10,005,56022E00,00
1.8 SBToolbox21,30758E-10,004,44354E10,003,04527E-20,101,02294E-10,002,97065E-20,005,31920E10,004,01659E20,004,65453E10,004,50897E-30,004,19941E-10,005,56022E00,00
1.8 SBWOdeSolver1,30703E-10,004,44353E1