Test: BIOMD0000000028.xml - Ok

test: BIOMD0000000028.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000028.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Mpp_MKP3  MpT_MKP3_T  MEK  M_MKP3_T  M  MKP3  MpT_MKP3_Y  M_MKP3_Y  MpT  M_MEK_T  Mpp  MpT_MEK  MpY  MpY_MKP3  MpY_MEK  M_MEK_Y 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Mpp_MKP3 MpT_MKP3_T MEK M_MKP3_T M MKP3 MpT_MKP3_Y M_MKP3_Y MpT M_MEK_T Mpp MpT_MEK MpY MpY_MKP3 MpY_MEK M_MEK_Y
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - - - - - 0,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim0,00000E00,000,00000E00,001,80000E20,000,00000E00,008,00000E20,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 ByoDyn1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 Jarnac1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 MathSBML1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 Oscill8 Core1,21385E-50,001,28121E-20,005,92330E00,001,15021E10,005,92779E20,006,95885E10,001,32196E-20,001,87156E10,001,96358E-10,001,60478E20,005,68400E-50,007,82508E-40,00 - - - - - - 1,35443E10,00
0.2 SBToolbox21,21662E-50,231,28138E-20,005,91806E00,001,15020E10,005,92777E20,006,95878E10,001,32207E-20,001,87155E10,001,96353E-10,001,60487E20,005,68949E-50,007,82854E-40,002,53654E00,001,67770E-10,005,33839E-20,001,35451E10,00
0.2 SBWOdeSolver1,21387E-50,001,28121E-20,005,92331E00,001,15021E10,005,92779E20,006,95885E10,001,32196E-20,001,87156E10,001,96358E-10,001,60478E20,005,68404E-50,007,82508E-40,002,53655E00,001,67758E-10,005,33611E-20,001,35443E10,00
0.2 VCell1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 copasi1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 edu.kgi.roadRunner1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.2 jsim1,21374E-50,001,28118E-20,005,92317E00,001,15022E10,005,92778E20,006,95882E10,001,32192E-20,001,87158E10,001,96359E-10,001,60478E20,005,68371E-50,007,82488E-40,002,53657E00,001,67754E-10,005,33597E-20,001,35443E10,00
0.4 BioUML7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 ByoDyn7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 Jarnac7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 MathSBML7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 Oscill8 Core7,48308E-50,003,95427E-20,005,94491E00,001,88195E10,005,70897E20,005,01461E10,004,22602E-20,003,04505E10,003,94817E-10,001,62176E20,002,50588E-40,002,12819E-30,00 - - - - - - 1,17337E10,00
0.4 SBToolbox27,52267E-50,533,95765E-20,005,94474E00,001,88209E10,005,70896E20,005,01410E10,004,22947E-20,003,04538E10,003,94741E-10,001,62178E20,002,50541E-40,002,12748E-30,004,79860E00,005,02341E-10,001,43655E-10,001,17330E10,00
0.4 SBWOdeSolver7,48310E-50,003,95427E-20,005,94491E00,001,88195E10,005,70897E20,005,01461E10,004,22602E-20,003,04505E10,003,94817E-10,001,62176E20,002,50587E-40,002,12819E-30,004,79860E00,005,02004E-10,001,43697E-10,001,17337E10,00
0.4 VCell7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 copasi7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 edu.kgi.roadRunner7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.4 jsim7,48273E-50,003,95428E-20,005,94491E00,001,88196E10,005,70897E20,005,01458E10,004,22602E-20,003,04507E10,003,94817E-10,001,62176E20,002,50576E-40,002,12816E-30,004,79862E00,005,02006E-10,001,43695E-10,001,17336E10,00
0.6 BioUML2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 ByoDyn2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 Jarnac2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 MathSBML2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 Oscill8 Core2,12170E-40,006,57170E-20,006,05553E00,002,38012E10,005,55734E20,003,69680E10,007,27830E-20,003,82901E10,005,90824E-10,001,63161E20,006,79533E-40,004,18604E-30,00 - - - - - - 1,05038E10,00
0.6 SBToolbox22,13284E-40,536,57917E-20,116,05551E00,002,38045E10,005,55728E20,003,69578E10,007,28612E-20,113,82956E10,005,90665E-10,001,63158E20,006,78976E-40,004,18405E-30,006,69763E00,008,02815E-10,002,75200E-10,001,05030E10,00
0.6 SBWOdeSolver2,12170E-40,006,57170E-20,006,05553E00,002,38012E10,005,55734E20,003,69680E10,007,27830E-20,003,82901E10,005,90824E-10,001,63161E20,006,79533E-40,004,18604E-30,006,69775E00,008,02032E-10,002,75312E-10,001,05038E10,00
0.6 VCell2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 copasi2,12164E-40,006,57173E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 edu.kgi.roadRunner2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.6 jsim2,12164E-40,006,57174E-20,006,05553E00,002,38013E10,005,55734E20,003,69677E10,007,27833E-20,003,82903E10,005,90824E-10,001,63161E20,006,79510E-40,004,18600E-30,006,69777E00,008,02038E-10,002,75310E-10,001,05037E10,00
0.8 BioUML4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 ByoDyn4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 Jarnac4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 MathSBML4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 Oscill8 Core4,35330E-40,008,68728E-20,006,13830E00,002,72626E10,005,44869E20,002,79357E10,009,96534E-20,004,35981E10,007,93570E-10,001,63747E20,001,43640E-30,006,82144E-30,00 - - - - - - 9,67269E00,00
0.8 SBToolbox24,37180E-40,428,69724E-20,116,13840E00,002,72664E10,005,44858E20,002,79230E10,009,97599E-20,114,36054E10,007,93352E-10,001,63748E20,001,43504E-30,006,81818E-30,008,40978E00,001,01771E00,104,34780E-10,009,67144E00,00
0.8 SBWOdeSolver4,35330E-40,008,68728E-20,006,13830E00,002,72626E10,005,44869E20,002,79357E10,009,96534E-20,004,35981E10,007,93570E-10,001,63747E20,001,43640E-30,006,82144E-30,008,41003E00,001,01669E00,004,34929E-10,009,67269E00,00
0.8 VCell4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 copasi4,35323E-40,008,68732E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96538E-20,004,35983E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 edu.kgi.roadRunner4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
0.8 jsim4,35323E-40,008,68733E-20,006,13830E00,002,72627E10,005,44869E20,002,79354E10,009,96539E-20,004,35982E10,007,93569E-10,001,63747E20,001,43636E-30,006,82139E-30,008,41004E00,001,01669E00,004,34927E-10,009,67267E00,00
1.0 BioUML7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 ByoDyn7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 Jarnac7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 MathSBML7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 Oscill8 Core7,42094E-40,001,02386E-10,006,20098E00,002,97110E10,005,36868E20,002,16950E10,001,21501E-10,004,72204E10,001,00511E00,001,64065E20,002,60256E-30,009,94745E-30,00 - - - - - - 9,10995E00,00
1.0 SBToolbox27,44337E-40,301,02485E-10,006,20103E00,002,97156E10,005,36855E20,002,16821E10,001,21613E-10,004,72280E10,001,00492E00,001,64069E20,002,60067E-30,009,94321E-30,001,00201E10,001,15001E00,006,13967E-10,009,10862E00,00
1.0 SBWOdeSolver7,42094E-40,001,02386E-10,006,20098E00,002,97110E10,005,36868E20,002,16950E10,001,21501E-10,004,72204E10,001,00511E00,001,64065E20,002,60256E-30,009,94745E-30,001,00200E10,001,14900E00,006,14134E-10,009,10995E00,00
1.0 VCell7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 copasi7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 edu.kgi.roadRunner7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.0 jsim7,42086E-40,001,02387E-10,006,20099E00,002,97110E10,005,36868E20,002,16948E10,001,21501E-10,004,72205E10,001,00511E00,001,64065E20,002,60250E-30,009,94740E-30,001,00200E10,001,14900E00,006,14133E-10,009,10993E00,00
1.2 BioUML1,12473E-30,001,13033E-10,00