Test: BIOMD0000000029.xml - Ok

test: BIOMD0000000029.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000029.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: MpT  Mpp  MpY  M 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation MpT Mpp MpY M
var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 Oscill8 Core0,00000E00,000,00000E00,00 - - 8,00000E20,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,008,00000E20,00
0.2 BioUML2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 ByoDyn2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 Jarnac2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 MathSBML2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 Oscill8 Core2,67470E-10,002,97583E-40,00 - - 7,97970E20,00
0.2 SBToolbox22,67473E-10,002,97330E-40,001,76254E00,007,97972E20,00
0.2 SBWOdeSolver2,67470E-10,002,97582E-40,001,76249E00,007,97970E20,00
0.2 VCell2,67469E-10,002,97797E-40,001,76249E00,007,97970E20,00
0.2 copasi2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 edu.kgi.roadRunner2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.2 jsim2,67470E-10,002,97568E-40,001,76250E00,007,97970E20,00
0.4 BioUML5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 ByoDyn5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 Jarnac5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 MathSBML5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 Oscill8 Core5,33463E-10,001,18802E-30,00 - - 7,95948E20,00
0.4 SBToolbox25,33469E-10,001,18736E-30,003,51750E00,007,95944E20,00
0.4 SBWOdeSolver5,33463E-10,001,18802E-30,003,51746E00,007,95948E20,00
0.4 VCell5,33463E-10,001,18822E-30,003,51746E00,007,95948E20,00
0.4 copasi5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 edu.kgi.roadRunner5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.4 jsim5,33463E-10,001,18799E-30,003,51746E00,007,95948E20,00
0.6 BioUML7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 ByoDyn7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 Jarnac7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 MathSBML7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 Oscill8 Core7,97990E-10,002,66791E-30,00 - - 7,93934E20,00
0.6 SBToolbox27,97989E-10,002,66692E-30,005,26497E00,007,93936E20,00
0.6 SBWOdeSolver7,97990E-10,002,66791E-30,005,26494E00,007,93934E20,00
0.6 VCell7,97989E-10,002,66809E-30,005,26494E00,007,93934E20,00
0.6 copasi7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 edu.kgi.roadRunner7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.6 jsim7,97990E-10,002,66786E-30,005,26494E00,007,93934E20,00
0.8 BioUML1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 ByoDyn1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 Jarnac1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 MathSBML1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 Oscill8 Core1,06106E00,004,73385E-30,00 - - 7,91929E20,00
0.8 SBToolbox21,06105E00,004,73193E-30,007,00495E00,007,91928E20,00
0.8 SBWOdeSolver1,06106E00,004,73385E-30,007,00496E00,007,91929E20,00
0.8 VCell1,06106E00,004,73402E-30,007,00496E00,007,91929E20,00
0.8 copasi1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 edu.kgi.roadRunner1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
0.8 jsim1,06106E00,004,73380E-30,007,00496E00,007,91929E20,00
1.0 BioUML1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 ByoDyn1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 Jarnac1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 MathSBML1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 Oscill8 Core1,32268E00,007,38249E-30,00 - - 7,89932E20,00
1.0 SBToolbox21,32269E00,007,38006E-30,008,73756E00,007,89930E20,00
1.0 SBWOdeSolver1,32268E00,007,38249E-30,008,73756E00,007,89932E20,00
1.0 VCell1,32268E00,007,38265E-30,008,73755E00,007,89932E20,00
1.0 copasi1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 edu.kgi.roadRunner1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.0 jsim1,32268E00,007,38243E-30,008,73756E00,007,89932E20,00
1.2 BioUML1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 ByoDyn1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 Jarnac1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 MathSBML1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 Oscill8 Core1,58286E00,001,06105E-20,00 - - 7,87944E20,00
1.2 SBToolbox21,58284E00,001,06060E-20,001,04627E10,007,87942E20,00
1.2 SBWOdeSolver1,58286E00,001,06105E-20,001,04628E10,007,87944E20,00
1.2 VCell1,58286E00,001,06106E-20,001,04628E10,007,87944E20,00
1.2 copasi1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 edu.kgi.roadRunner1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.2 jsim1,58286E00,001,06104E-20,001,04628E10,007,87944E20,00
1.4 BioUML1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 ByoDyn1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 Jarnac1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 MathSBML1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 Oscill8 Core1,84161E00,001,44145E-20,00 - - 7,85963E20,00
1.4 SBToolbox21,84159E00,001,44094E-20,001,21810E10,007,85964E20,00
1.4 SBWOdeSolver1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 VCell1,84161E00,001,44146E-20,001,21806E10,007,85963E20,00
1.4 copasi1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 edu.kgi.roadRunner1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.4 jsim1,84161E00,001,44144E-20,001,21806E10,007,85963E20,00
1.6 BioUML2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 ByoDyn2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 Jarnac2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 MathSBML2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 Oscill8 Core2,09894E00,001,87911E-20,00 - - 7,83991E20,00
1.6 SBToolbox22,09895E00,001,87837E-20,001,38912E10,007,83994E20,00
1.6 SBWOdeSolver2,09894E00,001,87911E-20,001,38911E10,007,83991E20,00
1.6 VCell2,09894E00,001,87913E-20,001,38911E10,007,83991E20,00
1.6 copasi2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 edu.kgi.roadRunner2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.6 jsim2,09894E00,001,87910E-20,001,38911E10,007,83991E20,00
1.8 BioUML2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 ByoDyn2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 Jarnac2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 MathSBML2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 Oscill8 Core2,35486E00,002,37372E-20,00 - - 7,82027E20,00
1.8 SBToolbox22,35490E00,002,37268E-20,001,55947E10,007,82028E20,00
1.8 SBWOdeSolver2,35486E00,002,37372E-20,001,55944E10,007,82027E20,00
1.8 VCell2,35486E00,002,37373E-20,001,55943E10,007,82027E20,00
1.8 copasi2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 edu.kgi.roadRunner2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
1.8 jsim2,35486E00,002,37371E-20,001,55944E10,007,82027E20,00
2.0 BioUML2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 ByoDyn2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 Jarnac2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 MathSBML2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 Oscill8 Core2,60937E00,002,92493E-20,00 - - 7,80071E20,00
2.0 SBToolbox22,60936E00,002,92380E-20,001,72902E10,007,80070E20,00
2.0 SBWOdeSolver2,60937E00,002,92493E-20,001,72903E10,007,80071E20,00
2.0 VCell2,60937E00,002,92495E-20,001,72903E10,007,80071E20,00
2.0 copasi2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 edu.kgi.roadRunner2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.0 jsim2,60937E00,002,92492E-20,001,72903E10,007,80071E20,00
2.2 BioUML2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 ByoDyn2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 Jarnac2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 MathSBML2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 Oscill8 Core2,86249E00,003,53244E-20,00 - - 7,78123E20,00
2.2 SBToolbox22,86253E00,003,53093E-20,001,89793E10,007,78122E20,00
2.2 SBWOdeSolver2,86249E00,003,53244E-20,001,89791E10,007,78123E20,00
2.2 VCell2,86249E00,003,53245E-20,001,89791E10,007,78123E20,00
2.2 copasi2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 edu.kgi.roadRunner2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.2 jsim2,86250E00,003,53242E-20,001,89791E10,007,78123E20,00
2.4 BioUML3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 ByoDyn3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 Jarnac3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 MathSBML3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 Oscill8 Core3,11423E00,004,19590E-20,00 - - 7,76183E20,00
2.4 SBToolbox23,11428E00,004,19390E-20,002,06608E10,007,76184E20,00
2.4 SBWOdeSolver3,11423E00,004,19590E-20,002,06606E10,007,76183E20,00
2.4 VCell3,11423E00,004,19591E-20,002,06606E10,007,76183E20,00
2.4 copasi3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 edu.kgi.roadRunner3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.4 jsim3,11423E00,004,19588E-20,002,06606E10,007,76183E20,00
2.6 BioUML3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 ByoDyn3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 Jarnac3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 MathSBML3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 Oscill8 Core3,36459E00,004,91499E-20,00 - - 7,74251E20,00
2.6 SBToolbox23,36465E00,004,91260E-20,002,23352E10,007,74253E20,00
2.6 SBWOdeSolver3,36459E00,004,91499E-20,002,23350E10,007,74251E20,00
2.6 VCell3,36459E00,004,91501E-20,002,23350E10,007,74251E20,00
2.6 copasi3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 edu.kgi.roadRunner3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.6 jsim3,36459E00,004,91498E-20,002,23350E10,007,74251E20,00
2.8 BioUML3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 ByoDyn3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 Jarnac3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 MathSBML3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 Oscill8 Core3,61358E00,005,68941E-20,00 - - 7,72327E20,00
2.8 SBToolbox23,61363E00,005,68697E-20,002,40025E10,007,72328E20,00
2.8 SBWOdeSolver3,61358E00,005,68941E-20,002,40022E10,007,72327E20,00
2.8 VCell3,61358E00,005,68942E-20,002,40022E10,007,72327E20,00
2.8 copasi3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 edu.kgi.roadRunner3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
2.8 jsim3,61358E00,005,68939E-20,002,40022E10,007,72327E20,00
3.0 BioUML3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 ByoDyn3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 Jarnac3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 MathSBML3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 Oscill8 Core3,86121E00,006,51881E-20,00 - - 7,70411E20,00
3.0 SBToolbox23,86128E00,006,51576E-20,002,56621E10,007,70410E20,00
3.0 SBWOdeSolver3,86121E00,006,51881E-20,002,56624E10,007,70411E20,00
3.0 VCell3,86121E00,006,51883E-20,002,56624E10,007,70411E20,00
3.0 copasi3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 edu.kgi.roadRunner3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.0 jsim3,86121E00,006,51880E-20,002,56624E10,007,70411E20,00
3.2 BioUML4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 ByoDyn4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 Jarnac4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 MathSBML4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 Oscill8 Core4,10749E00,007,40290E-20,00 - - 7,68503E20,00
3.2 SBToolbox24,10756E00,007,39904E-20,002,73154E10,007,68502E20,00
3.2 SBWOdeSolver4,10749E00,007,40290E-20,002,73154E10,007,68503E20,00
3.2 VCell4,10749E00,007,40291E-20,002,73154E10,007,68503E20,00
3.2 copasi4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 edu.kgi.roadRunner4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.2 jsim4,10749E00,007,40288E-20,002,73154E10,007,68503E20,00
3.4 BioUML4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 ByoDyn4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 Jarnac4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 MathSBML4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 Oscill8 Core4,35243E00,008,34135E-20,00 - - 7,66603E20,00
3.4 SBToolbox24,35252E00,008,33678E-20,002,89618E10,007,66604E20,00
3.4 SBWOdeSolver4,35243E00,008,34135E-20,002,89615E10,007,66603E20,00
3.4 VCell4,35243E00,008,34136E-20,002,89615E10,007,66603E20,00
3.4 copasi4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 edu.kgi.roadRunner4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.4 jsim4,35243E00,008,34133E-20,002,89615E10,007,66603E20,00
3.6 BioUML4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 ByoDyn4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 Jarnac4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 MathSBML4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 Oscill8 Core4,59603E00,009,33384E-20,00 - - 7,64710E20,00
3.6 SBToolbox24,59611E00,009,32904E-20,003,06005E10,007,64712E20,00
3.6 SBWOdeSolver4,59603E00,009,33384E-20,003,06005E10,007,64710E20,00
3.6 VCell4,59603E00,009,33385E-20,003,06005E10,007,64710E20,00
3.6 copasi4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 edu.kgi.roadRunner4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.6 jsim4,59603E00,009,33382E-20,003,06005E10,007,64710E20,00
3.8 BioUML4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 ByoDyn4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 Jarnac4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 MathSBML4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 Oscill8 Core4,83831E00,001,03801E-10,00 - - 7,62825E20,00
3.8 SBToolbox24,83840E00,001,03749E-10,003,22328E10,007,62824E20,00
3.8 SBWOdeSolver4,83831E00,001,03801E-10,003,22325E10,007,62825E20,00
3.8 VCell4,83831E00,001,03801E-10,003,22325E10,007,62825E20,00
3.8 copasi4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 edu.kgi.roadRunner4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
3.8 jsim4,83831E00,001,03800E-10,003,22325E10,007,62825E20,00
4.0 BioUML5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 ByoDyn5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 Jarnac5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 MathSBML5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 Oscill8 Core5,07927E00,001,14797E-10,00 - - 7,60948E20,00
4.0 SBToolbox25,07936E00,001,14736E-10,003,38576E10,007,60946E20,00
4.0 SBWOdeSolver5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 VCell5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 copasi5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 edu.kgi.roadRunner5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.0 jsim5,07927E00,001,14797E-10,003,38576E10,007,60948E20,00
4.2 BioUML5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 ByoDyn5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 Jarnac5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 MathSBML5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 Oscill8 Core5,31893E00,001,26325E-10,00 - - 7,59079E20,00
4.2 SBToolbox25,31906E00,001,26256E-10,003,54760E10,007,59078E20,00
4.2 SBWOdeSolver5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 VCell5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 copasi5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 edu.kgi.roadRunner5,31893E00,001,26325E-10,003,54758E10,007,59079E20,00
4.2 jsim5,31893E00,001,26325E-10,00