Test: BIOMD0000000030.xml - Ok

test: BIOMD0000000030.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000030.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Mpp_MKP_Y  M_MAPKK_Y  M_MKP_Y  M_MKP_T  M  MpT_MKP_T  MpT_MKP_Y  Mpp_MKP_T  MpY_MKP_Y  MAPKK  MpT  Mpp  MKP  MpT_MAPKK  MpY_MAPKK  MpY_MKP_T  M_MAPKK_T  MpY 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Mpp_MKP_Y M_MAPKK_Y M_MKP_Y M_MKP_T M MpT_MKP_T MpT_MKP_Y Mpp_MKP_T MpY_MKP_Y MAPKK MpT Mpp MKP MpT_MAPKK MpY_MAPKK MpY_MKP_T M_MAPKK_T MpY
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core0,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,008,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,80000E20,000,00000E00,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 ByoDyn1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 Jarnac1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 MathSBML1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 Oscill8 Core1,10702E-30,008,59704E10,00 - - 1,16578E10,00 - - 7,72696E-30,007,97265E-30,001,10702E-30,007,74108E-30,008,05581E00,001,22665E-10,004,35080E-30,006,93449E10,001,73788E-30,00 - - 7,97267E-30,008,59704E10,001,22665E-10,00
0.2 SBToolbox21,10887E-30,178,59759E10,001,89635E10,001,16580E10,005,97138E20,007,72722E-30,007,97310E-30,001,10887E-30,177,74138E-30,008,04467E00,001,22655E-10,004,35427E-30,006,93446E10,001,73808E-30,001,73808E-30,007,97311E-30,008,59759E10,001,22655E-10,00
0.2 SBWOdeSolver1,10704E-30,008,59704E10,001,89637E10,001,16578E10,005,97151E20,007,72696E-30,007,97266E-30,001,10704E-30,007,74108E-30,008,05582E00,001,22665E-10,004,35076E-30,006,93449E10,001,73788E-30,001,73789E-30,007,97267E-30,008,59704E10,001,22665E-10,00
0.2 VCell1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 copasi1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05534E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.2 edu.kgi.roadRunner1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05538E00,001,22665E-10,004,35076E-30,006,93447E10,001,73785E-30,001,73785E-30,007,97243E-30,008,59706E10,001,22666E-10,00
0.2 jsim1,10699E-30,008,59706E10,001,89638E10,001,16579E10,005,97150E20,007,72675E-30,007,97242E-30,001,10699E-30,007,74087E-30,008,05535E00,001,22665E-10,004,35075E-30,006,93447E10,001,73784E-30,001,73785E-30,007,97244E-30,008,59706E10,001,22666E-10,00
0.4 BioUML4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 ByoDyn4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 Jarnac4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 MathSBML4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 Oscill8 Core4,47646E-30,008,62436E10,00 - - 1,90208E10,00 - - 2,46708E-20,002,63902E-20,004,47646E-30,002,47669E-20,007,50641E00,002,49661E-10,001,17266E-20,005,01256E10,003,17776E-30,00 - - 2,63906E-20,008,62436E10,002,49671E-10,00
0.4 SBToolbox24,48326E-30,158,62442E10,003,07437E10,001,90218E10,005,77122E20,002,46797E-20,002,63993E-20,004,48326E-30,152,47764E-20,007,50553E00,002,49637E-10,001,17178E-20,005,01226E10,003,17586E-30,003,17596E-30,002,64003E-20,008,62442E10,002,49647E-10,00
0.4 SBWOdeSolver4,47646E-30,008,62436E10,003,07425E10,001,90208E10,005,77121E20,002,46708E-20,002,63902E-20,004,47646E-30,002,47669E-20,007,50641E00,002,49661E-10,001,17265E-20,005,01256E10,003,17776E-30,003,17785E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 VCell4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 copasi4,47636E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46709E-20,002,63901E-20,004,47636E-30,002,47669E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.4 edu.kgi.roadRunner4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46708E-20,002,63901E-20,004,47637E-30,002,47669E-20,007,50642E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17784E-30,002,63905E-20,008,62436E10,002,49671E-10,00
0.4 jsim4,47637E-30,008,62436E10,003,07427E10,001,90209E10,005,77121E20,002,46708E-20,002,63901E-20,004,47637E-30,002,47670E-20,007,50641E00,002,49662E-10,001,17262E-20,005,01253E10,003,17775E-30,003,17783E-30,002,63906E-20,008,62436E10,002,49671E-10,00
0.6 BioUML9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 ByoDyn9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 Jarnac9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 MathSBML9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 Oscill8 Core9,82196E-30,008,61551E10,00 - - 2,40726E10,00 - - 4,12020E-20,004,57581E-20,009,82196E-30,004,14497E-20,007,67973E00,003,68737E-10,002,54709E-20,003,70947E10,005,06546E-30,00 - - 4,57601E-20,008,61551E10,003,68775E-10,00
0.6 SBToolbox29,83403E-30,128,61552E10,003,86415E10,002,40743E10,005,64003E20,004,12237E-20,004,57806E-20,009,83403E-30,124,14712E-20,007,67974E00,003,68696E-10,002,54436E-20,103,70904E10,005,06436E-30,005,06476E-30,004,57826E-20,008,61552E10,003,68726E-10,00
0.6 SBWOdeSolver9,82196E-30,008,61551E10,003,86390E10,002,40726E10,005,64011E20,004,12020E-20,004,57581E-20,009,82196E-30,004,14497E-20,007,67973E00,003,68737E-10,002,54709E-20,003,70947E10,005,06546E-30,005,06589E-30,004,57601E-20,008,61551E10,003,68775E-10,00
0.6 VCell9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 copasi9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54703E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 edu.kgi.roadRunner9,82184E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12023E-20,004,57583E-20,009,82184E-30,004,14500E-20,007,67975E00,003,68737E-10,002,54703E-20,003,70944E10,005,06547E-30,005,06589E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.6 jsim9,82183E-30,008,61551E10,003,86391E10,002,40727E10,005,64011E20,004,12022E-20,004,57583E-20,009,82183E-30,004,14500E-20,007,67973E00,003,68737E-10,002,54704E-20,003,70944E10,005,06546E-30,005,06588E-30,004,57603E-20,008,61551E10,003,68775E-10,00
0.8 BioUML1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 ByoDyn1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 Jarnac1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 MathSBML1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 Oscill8 Core1,70761E-20,008,60885E10,00 - - 2,76107E10,00 - - 5,42634E-20,006,25932E-20,001,70761E-20,005,47031E-20,007,80894E00,004,86512E-10,004,66355E-20,002,81270E10,006,99215E-30,00 - - 6,25986E-20,008,60885E10,004,86608E-10,00
0.8 SBToolbox21,70948E-20,118,60882E10,004,39983E10,002,76131E10,005,54910E20,005,42963E-20,006,26280E-20,001,70948E-20,115,47364E-20,007,80905E00,004,86448E-10,004,65871E-20,102,81200E10,006,99085E-30,006,99204E-30,006,26340E-20,008,60882E10,004,86548E-10,00
0.8 SBWOdeSolver1,70761E-20,008,60885E10,004,39939E10,002,76107E10,005,54916E20,005,42634E-20,006,25932E-20,001,70761E-20,005,47031E-20,007,80894E00,004,86512E-10,004,66355E-20,002,81270E10,006,99216E-30,006,99335E-30,006,25986E-20,008,60885E10,004,86608E-10,00
0.8 VCell1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 copasi1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 edu.kgi.roadRunner1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99214E-30,006,99333E-30,006,25989E-20,008,60885E10,004,86608E-10,00
0.8 jsim1,70760E-20,008,60885E10,004,39941E10,002,76108E10,005,54916E20,005,42638E-20,006,25935E-20,001,70760E-20,005,47035E-20,007,80894E00,004,86512E-10,004,66347E-20,002,81268E10,006,99215E-30,006,99334E-30,006,25989E-20,008,60885E10,004,86608E-10,00
1.0 BioUML2,58281E-20,008,60398E10,004,76435E10,003,01317E10,005,48510E20,006,34736E-20,007,60289E-20,002,58281E-20,006,41160E-20,007,90250E00,006,04619E-10,007,61461E-20,002,18935E10,008,94332E-30,008,94578E-30,007,60395E-20,008,60398E10,006,04805E-10,00
1.0 ByoDyn2,58281E-20,008,60398E10,004,76435E10,003,01317E10,005,48510E20,006,34736E-20,007,60289E-20,002,58281E-20,006,41160E-20,007,90250E00,006,04619E-10,007,61461E-20,002,18935E10,008,94332E-30,008,94578E-30,007,60395E-20,008,60398E10,006,04805E-10,00
1.0 Jarnac2,58281E-20,008,60398E10,004,76435E10,003,01317E10,005,48510E20,006,34736E-20,007,60289E-20,002,58281E-20,006,41160E-20,007,90250E00,006,04619E-10,007,61461E-20,002,18935E10,008,94332E-30,008,94578E-30,007,60395E-20,008,60398E10,006,04805E-10,00
1.0 MathSBML2,58281E-20,008,60398E10,00