Test: BIOMD0000000032.xml - Ok

test: BIOMD0000000032.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000032.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6618819961.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Ste11  Ste12  Gabc  Sst2  Cdc28  Bar1aex  alpha  Ste2a  Gbc  Ste12a  Bar1a  Fus3PP  Ste2  Bar1  Ste20  Fus3  Far1U  Far1  complexG  complexF  complexE  complexD  GaGDP  complexC  complexB  complexA  complexN  Ste5  complexM  Far1PP  complexL  Ste7  complexK  complexI  complexH  GaGTP 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Ste11 Ste12 Gabc Sst2 Cdc28 Bar1aex alpha Ste2a Gbc Ste12a Bar1a Fus3PP Ste2 Bar1 Ste20 Fus3 Far1U Far1 complexG complexF complexE complexD GaGDP complexC complexB complexA complexN Ste5 complexM Far1PP complexL Ste7 complexK complexI complexH GaGTP
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core - - - - 1,66667E30,000,00000E00,00 - - - - 1,00000E20,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,001,66667E30,002,00000E20,00 - - 6,86400E20,00 - - 5,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,00 - - 0,00000E00,001,58332E20,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - -
0.0 SBToolbox21,58330E20,002,00000E20,001,66670E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66670E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35720E20,007,78750E10,001,05940E20,000,00000E00,001,58330E20,000,00000E00,000,00000E00,000,00000E00,003,64000E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,002,84217E-140,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim1,58332E20,002,00000E20,001,66667E30,000,00000E00,003,00000E20,000,00000E00,001,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,66667E30,002,00000E20,001,00000E30,006,86400E20,000,00000E00,005,00000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,35725E20,007,78754E10,001,05943E20,000,00000E00,001,58332E20,000,00000E00,000,00000E00,000,00000E00,003,63997E10,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML1,52739E20,001,91405E20,001,64468E30,001,92325E-30,003,00000E20,001,52921E-30,009,99999E10,003,62975E10,008,80695E00,008,59538E00,005,52301E00,008,64643E-20,001,62158E30,001,94475E20,009,86858E20,006,75693E20,003,49382E20,001,50618E20,001,74190E-10,001,33641E00,008,33592E00,004,25081E-20,002,99645E-40,002,29269E20,007,32044E10,001,04808E20,001,83804E-50,001,52739E20,004,70469E-70,002,82628E-50,003,22799E-20,003,43429E10,008,07905E-10,001,55761E00,008,97203E-10,002,19907E10,00
0.2 ByoDyn1,52740E20,001,91420E20,001,64468E30,001,90808E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99638E-40,002,29271E20,007,32053E10,001,04808E20,001,82482E-50,001,52740E20,004,65888E-70,002,81156E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.2 MathSBML1,52740E20,001,91420E20,001,64468E30,001,90808E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99638E-40,002,29271E20,007,32053E10,001,04808E20,001,82482E-50,001,52740E20,004,65891E-70,002,81156E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.2 Oscill8 Core - - - - 1,64468E30,001,91230E-30,00 - - - - 9,99999E10,003,62980E10,008,80672E00,00 - - 5,51050E00,008,63816E-20,001,62158E30,001,94488E20,00 - - 6,75704E20,00 - - 1,50602E20,001,74174E-10,001,33630E00,008,33547E00,004,25076E-20,002,99634E-40,002,29270E20,007,32051E10,00 - - 1,82839E-50,001,52740E20,00 - - 2,81556E-50,003,22589E-20,00 - - 8,07380E-10,001,55666E00,008,97079E-10,00 - -
0.2 SBToolbox21,52737E20,001,91409E20,001,64464E30,001,91065E-30,003,00000E20,001,53242E-30,001,00000E20,003,62980E10,008,80643E00,008,59323E00,005,52658E00,008,64023E-20,001,62154E30,001,94470E20,009,86859E20,006,75700E20,003,49404E20,001,50596E20,001,74167E-10,001,33627E00,008,33520E00,004,25074E-20,002,99707E-40,002,29272E20,007,32051E10,001,04810E20,001,83399E-50,001,52737E20,004,67562E-70,002,81384E-50,003,22628E-20,003,43431E10,008,07543E-10,001,55697E00,008,97005E-10,002,19879E10,00
0.2 SBWOdeSolver1,52740E20,001,91416E20,001,64468E30,001,91238E-30,003,00000E20,001,52465E-30,009,99999E10,003,62980E10,008,80669E00,008,58441E00,005,51200E00,008,63825E-20,001,62158E30,001,94486E20,009,86861E20,006,75704E20,003,49398E20,001,50602E20,001,74173E-10,001,33629E00,008,33544E00,004,25074E-20,002,99636E-40,002,29271E20,007,32051E10,001,04808E20,001,82851E-50,001,52740E20,004,67192E-70,002,81565E-50,003,22587E-20,003,43426E10,008,07377E-10,001,55665E00,008,97075E-10,002,19882E10,00
0.2 VCell1,52740E20,001,91420E20,001,64468E30,001,90808E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99638E-40,002,29271E20,007,32053E10,001,04808E20,001,82483E-50,001,52740E20,004,65891E-70,002,81156E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.2 copasi1,52740E20,001,91420E20,001,64468E30,001,90808E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99638E-40,002,29271E20,007,32053E10,001,04808E20,001,82482E-50,001,52740E20,004,65888E-70,002,81156E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.2 edu.kgi.roadRunner1,52740E20,001,91420E20,001,64468E30,001,90809E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99638E-40,002,29271E20,007,32053E10,001,04808E20,001,82483E-50,001,52740E20,004,65894E-70,002,81157E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.2 jsim1,52740E20,001,91420E20,001,64468E30,001,90808E-30,003,00000E20,001,52289E-30,009,99999E10,003,62981E10,008,80660E00,008,58045E00,005,50792E00,008,63514E-20,001,62158E30,001,94491E20,009,86862E20,006,75708E20,003,49403E20,001,50597E20,001,74167E-10,001,33625E00,008,33528E00,004,25072E-20,002,99431E-40,002,29271E20,007,32053E10,001,04808E20,001,82482E-50,001,52740E20,004,65888E-70,002,81156E-50,003,22511E-20,003,43425E10,008,07192E-10,001,55632E00,008,97032E-10,002,19873E10,00
0.4 BioUML1,41226E20,001,80196E10,001,58718E30,004,70039E00,002,99973E20,001,26635E-10,009,99770E10,006,60452E10,002,27551E10,001,81980E20,001,52271E20,009,18180E00,001,58167E30,004,76023E10,009,43370E20,004,98650E20,004,54632E20,004,52820E10,005,88472E-10,004,42445E00,002,44754E10,009,84791E-20,006,89852E-40,001,93694E20,006,01891E10,001,08351E20,002,72873E-20,001,41226E20,001,91891E-30,005,67554E-20,004,23672E-10,003,93885E10,008,18148E00,001,50779E10,003,45847E00,007,94847E10,00
0.4 ByoDyn1,41226E20,001,80143E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E20,001,52272E20,009,17786E00,001,58167E30,004,76010E10,009,43370E20,004,98649E20,004,54632E20,004,52819E10,005,88472E-10,004,42446E00,002,44754E10,009,84793E-20,006,89830E-40,001,93694E20,006,01891E10,001,08351E20,002,72682E-20,001,41226E20,001,91740E-30,005,66874E-20,004,23668E-10,003,93886E10,008,18145E00,001,50779E10,003,45848E00,007,94847E10,00
0.4 MathSBML1,41226E20,001,80143E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E20,001,52272E20,009,17786E00,001,58167E30,004,76010E10,009,43370E20,004,98649E20,004,54632E20,004,52819E10,005,88472E-10,004,42446E00,002,44754E10,009,84793E-20,006,89830E-40,001,93694E20,006,01891E10,001,08351E20,002,72682E-20,001,41226E20,001,91740E-30,005,66874E-20,004,23668E-10,003,93886E10,008,18145E00,001,50779E10,003,45848E00,007,94847E10,00
0.4 Oscill8 Core - - - - 1,58718E30,004,70422E00,00 - - - - 9,99770E10,006,60451E10,002,27548E10,00 - - 1,52251E20,009,24355E00,001,58167E30,004,76219E10,00 - - 4,98676E20,00 - - 4,52832E10,005,88466E-10,004,42440E00,002,44750E10,009,84767E-20,006,90121E-40,001,93694E20,006,01896E10,00 - - 2,76730E-20,001,41226E20,00 - - 5,81144E-20,004,23719E-10,00 - - 8,18189E00,001,50787E10,003,45845E00,00 - -
0.4 SBToolbox21,41223E20,001,80571E10,001,58714E30,004,70783E00,002,99970E20,001,26737E-10,009,99771E10,006,60451E10,002,27547E10,001,81948E20,001,52283E20,009,22937E00,001,58168E30,004,75915E10,009,43369E20,004,98639E20,004,54629E20,004,52806E10,005,88459E-10,004,42437E00,002,44744E10,009,84758E-20,006,90317E-40,001,93697E20,006,01886E10,001,08348E20,002,74936E-20,001,41223E20,001,93482E-30,005,74060E-20,004,23740E-10,003,93899E10,008,18186E00,001,50787E10,003,45844E00,007,94849E10,00
0.4 SBWOdeSolver1,41226E20,001,81083E10,281,58718E30,004,70420E00,002,99972E20,001,26650E-10,009,99770E10,006,60449E10,002,27547E10,001,81892E20,001,52252E20,009,24345E00,001,58167E30,004,76214E10,009,43370E20,004,98676E20,004,54629E20,004,52832E10,005,88463E-10,004,42439E00,002,44749E10,009,84763E-20,006,90120E-40,001,93694E20,006,01896E10,001,08351E20,002,76728E-20,001,41226E20,001,94950E-30,005,81135E-20,004,23718E-10,003,93876E10,008,18186E00,001,50786E10,003,45844E00,007,94848E10,00
0.4 VCell1,41226E20,001,80143E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E20,001,52272E20,009,17786E00,001,58167E30,004,76010E10,009,43370E20,004,98649E20,004,54632E20,004,52819E10,005,88472E-10,004,42446E00,002,44754E10,009,84793E-20,006,89830E-40,001,93694E20,006,01891E10,001,08351E20,002,72682E-20,001,41226E20,001,91740E-30,005,66875E-20,004,23668E-10,003,93886E10,008,18145E00,001,50779E10,003,45848E00,007,94847E10,00
0.4 copasi1,41226E20,001,80143E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E20,001,52272E20,009,17785E00,001,58167E30,004,76010E10,009,43370E20,004,98649E20,004,54632E20,004,52818E10,005,88472E-10,004,42446E00,002,44754E10,009,84793E-20,006,89830E-40,001,93694E20,006,01891E10,001,08351E20,002,72683E-20,001,41226E20,001,91741E-30,005,66875E-20,004,23668E-10,003,93886E10,008,18145E00,001,50779E10,003,45848E00,007,94847E10,00
0.4 edu.kgi.roadRunner1,41226E20,001,80144E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E20,001,52272E20,009,17790E00,001,58167E30,004,76010E10,009,43370E20,004,98649E20,004,54632E20,004,52818E10,005,88472E-10,004,42446E00,002,44754E10,009,84793E-20,006,89828E-40,001,93694E20,006,01891E10,001,08351E20,002,72689E-20,001,41226E20,001,91745E-30,005,66896E-20,004,23668E-10,003,93886E10,008,18145E00,001,50779E10,003,45848E00,007,94847E10,00
0.4 jsim1,41226E20,001,80143E10,001,58718E30,004,70004E00,002,99973E20,001,26634E-10,009,99770E10,006,60452E10,002,27551E10,001,81986E2