Test: BIOMD0000000033.xml - Ok

test: BIOMD0000000033.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000033.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6619514794.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: BRafActive  SosInactive  Rap1Inactive  RasInactive  MekInactive  freeEGFReceptor  AktActive  AktInactive  P90RskActive  EGF  PI3KActive  ErkActive  MekActive  BRafInactive  Raf1Inactive  C3GActive  Raf1Active  freeNGFReceptor  C3GInactive  SosActive  ErkInactive  Rap1Active  boundEGFReceptor  boundNGFReceptor  RasActive  P90RskInactive  NGF  PI3KInactive 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation BRafActive SosInactive Rap1Inactive RasInactive MekInactive freeEGFReceptor AktActive AktInactive P90RskActive EGF PI3KActive ErkActive MekActive BRafInactive Raf1Inactive C3GActive Raf1Active freeNGFReceptor C3GInactive SosActive ErkInactive Rap1Active boundEGFReceptor boundNGFReceptor RasActive P90RskInactive NGF PI3KInactive
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 ByoDyn0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 Jarnac0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 MathSBML0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 Oscill8 Core - - 1,20000E50,001,20000E50,001,20000E50,006,00000E50,00 - - - - 1,20000E50,00 - - - - - - - - - - 1,20000E50,001,20000E50,00 - - - - 1,00000E40,001,20000E50,00 - - 6,00000E50,00 - - 0,00000E00,00 - - - - 1,20000E50,00 - - 1,20000E50,00
0.0 SBToolbox20,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 SBWOdeSolver0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 VCell0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 copasi0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 edu.kgi.roadRunner0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.0 jsim0,00000E00,001,20000E50,001,20000E50,001,20000E50,006,00000E50,008,00000E40,000,00000E00,001,20000E50,000,00000E00,001,00020E70,000,00000E00,000,00000E00,000,00000E00,001,20000E50,001,20000E50,000,00000E00,000,00000E00,001,00000E40,001,20000E50,000,00000E00,006,00000E50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,20000E50,004,56000E50,001,20000E50,00
0.2 BioUML9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 ByoDyn9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 Jarnac9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 MathSBML9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 Oscill8 Core - - 1,77825E40,001,19911E50,001,00794E50,005,98822E50,00 - - - - 1,19950E50,00 - - - - - - - - - - 1,19999E50,001,19259E50,00 - - - - 9,87485E30,001,18337E50,00 - - 5,99765E50,00 - - 7,99955E40,00 - - - - 1,20000E50,00 - - 6,53629E40,00
0.2 SBToolbox29,26872E-10,001,77758E40,001,19910E50,001,00789E50,005,98823E50,004,46500E00,005,00560E10,001,19950E50,002,87180E-20,009,92200E60,005,46378E40,002,34788E20,001,17756E30,001,20000E50,001,19261E50,001,66336E30,007,40457E20,009,87482E30,001,18333E50,001,02227E50,005,99761E50,008,89316E10,007,99960E40,001,25146E20,001,92075E40,001,20000E50,004,55870E50,006,53622E40,00
0.2 SBWOdeSolver9,26459E-10,001,77825E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00578E10,001,19950E50,002,86617E-20,009,92200E60,005,46371E40,002,34686E20,001,17769E30,001,19999E50,001,19259E50,001,66333E30,007,40573E20,009,87485E30,001,18337E50,001,02217E50,005,99765E50,008,89274E10,007,99955E40,001,25148E20,001,92058E40,001,20000E50,004,55875E50,006,53629E40,00
0.2 VCell9,27938E-10,129,64660E294,61,19911E50,009,74476E40,005,97364E50,244,46606E00,001,32558E21651,19867E50,009,17896E-22209,92200E60,009,24251E469,26,42112E21732,63569E31241,19999E50,001,18740E50,441,66396E30,001,26009E370,29,87485E30,001,18336E50,001,19035E50,005,99358E50,008,89938E10,007,99955E40,001,25148E20,002,25524E417,41,20000E50,004,55875E50,002,75749E457,8
0.2 copasi9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46701E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17759E30,001,19999E50,001,19259E50,001,66325E30,007,40574E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 edu.kgi.roadRunner9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.2 jsim9,26271E-10,001,77809E40,001,19911E50,001,00794E50,005,98822E50,004,46502E00,005,00559E10,001,19950E50,002,86491E-20,009,92200E60,005,46377E40,002,34633E20,001,17760E30,001,19999E50,001,19259E50,001,66325E30,007,40575E20,009,87485E30,001,18337E50,001,02219E50,005,99765E50,008,89190E10,007,99955E40,001,25148E20,001,92062E40,001,20000E50,004,55875E50,006,53623E40,00
0.4 BioUML9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 ByoDyn9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 Jarnac9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 MathSBML9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 Oscill8 Core - - 1,02454E20,001,19501E50,009,72646E40,005,94164E50,00 - - - - 1,19821E50,00 - - - - - - - - - - 1,19991E50,001,18354E50,00 - - - - 9,75148E30,001,13392E50,00 - - 5,97458E50,00 - - 7,99955E40,00 - - - - 1,19999E50,00 - - 3,11861E40,00
0.4 SBToolbox29,13638E00,001,00364E20,001,19501E50,009,72637E40,005,94162E50,004,46500E00,001,78840E20,001,19820E50,006,75937E-10,009,92200E60,008,88169E40,002,54234E30,005,83552E30,001,19990E50,001,18352E50,006,60773E30,001,64572E30,009,75145E30,001,13393E50,001,19898E50,005,97458E50,004,99228E20,007,99960E40,002,48515E20,002,27363E40,001,20000E50,004,55750E50,003,11831E40,00
0.4 SBWOdeSolver9,13536E00,001,02454E20,001,19501E50,009,72646E40,005,94164E50,004,46502E00,001,78840E20,001,19821E50,006,75411E-10,009,92200E60,008,88139E40,002,54216E30,005,83628E30,001,19991E50,001,18354E50,006,60775E30,001,64579E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99228E20,007,99955E40,002,48516E20,002,27354E40,001,19999E50,004,55751E50,003,11861E40,00
0.4 VCell9,13770E00,004,43963E095,61,19501E50,009,72357E40,005,91109E50,514,46597E00,003,10071E273,41,19690E50,111,39775E01079,92200E60,001,08097E521,74,58305E380,38,89142E352,31,19991E50,001,17967E50,336,60830E30,002,03328E323,59,75148E30,001,13392E50,001,19996E50,005,95417E50,344,99292E20,007,99955E40,002,48516E20,002,27643E40,121,19999E50,004,55751E50,001,19032E461,8
0.4 copasi9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75295E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 edu.kgi.roadRunner9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.4 jsim9,13470E00,001,02020E20,001,19501E50,009,72645E40,005,94164E50,004,46502E00,001,78838E20,001,19821E50,006,75294E-10,009,92200E60,008,88147E40,002,54196E30,005,83615E30,001,19991E50,001,18354E50,006,60759E30,001,64580E30,009,75148E30,001,13392E50,001,19898E50,005,97458E50,004,99210E20,007,99955E40,002,48516E20,002,27355E40,001,19999E50,004,55751E50,003,11853E40,00
0.6 BioUML3,07163E10,008,71957E00,001,18720E50,009,72364E40,005,86853E50,004,46502E00,003,51807E20,001,19648E50,003,79602E00,009,92200E60,001,06398E50,009,03009E30,001,31471E40,001,19969E50,001,17708E50,001,47420E40,002,29155E30,009,62987E30,001,05258E50,001,19991E50,005,90970E50,001,27977E30,007,99955E40,003,70131E20,002,27636E40,001,19996E50,004,55630E50,001,36016E40,00
0.6 ByoDyn3,07163E10,008,71957E00,001,18720E50,009,72364E40,005,86853E50,004,46502E00,003,51807E20,001,19648E50,003,79602E00,009,92200E60,001,06398E50,009,03009E30,001,31471E40,001,19969E50,001,17708E50,001,47420E40,002,29155E30,009,62987E30,001,05258E5