Test: BIOMD0000000034.xml - Ok

test: BIOMD0000000034.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000034.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: parameter_0000021  parameter_0000003  parameter_0000020  parameter_0000002  species_0000002  parameter_0000022  species_0000001  parameter_0000001  species_0000007  species_0000008  species_0000009  species_0000003  species_0000004  species_0000005  species_0000006  __internalVar12060038535150 
Simulators: BioUML  ByoDyn  edu.kgi.roadRunner  jsim 
timesimulation parameter_0000021 parameter_0000003 parameter_0000020 parameter_0000002 species_0000002 parameter_0000022 species_0000001 parameter_0000001 species_0000007 species_0000008 species_0000009 species_0000003 species_0000004 species_0000005 species_0000006 __internalVar12060038535150
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-30,000,00000E00,001,00000E-30,003,82320E-13,81E41,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-30,000,00000E00,000,00000E01001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,00 - -
0.0 edu.kgi.roadRunner - - - - - - - - 1,00000E-30,00 - - 1,00000E-30,00 - - 1,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,00 - -
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-30,000,00000E00,001,00000E-30,000,00000E01001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,001,00000E-30,00 - -
0.2 BioUML1,54099E-150,001,66644E-30,009,03287E-42,16E132,67545E-322,52,85068E-50,001,44383E-160,002,87526E-50,003,82320E-11,08E43,63681E-20,001,16588E-352,78,87792E-423,91,65786E-50,002,59191E-30,001,83406E-30,001,32816E-30,006,74940E-180,00
0.2 ByoDyn1,63573E-150,002,67539E-360,51,53278E-1696,31,66640E-323,72,87355E-50,809,03268E-46,26E142,00000E-16,95E58,70120E-475,11,32739E-396,43,63687E-21,38E31,16586E-30,002,84922E-571,91,65683E-599,42,59294E-341,41,83334E-338,0 - -
0.2 edu.kgi.roadRunner - - - - - - - - 2,85068E-50,00 - - 2,87526E-50,00 - - 3,63681E-20,002,46242E-30,007,22535E-20,001,65786E-50,002,59191E-30,001,83406E-30,001,32816E-30,00 - -
0.2 jsim3,94778E-1674,41,18578E-328,84,18002E-150,002,18368E-30,002,85067E-50,001,85804E-170,002,87526E-50,003,49823E-30,003,63682E-20,002,46242E-30,007,22535E-20,001,65120E-50,402,59191E-30,001,83406E-30,001,32816E-30,00 - -
0.4 BioUML1,22033E-132,43,50773E-337,71,90311E-31,65E105,62629E-30,004,54125E-50,001,14797E-1480,64,56944E-50,003,82320E-12,24E36,68176E-20,001,32453E-386,97,72487E-441,72,60458E-50,003,01099E-30,002,60926E-30,002,07749E-30,005,39066E-160,00
0.4 ByoDyn1,25092E-130,005,62609E-30,001,17687E-1499,93,50760E-337,74,56892E-50,611,90305E-33,21E124,00000E-18,75E57,57106E-495,42,07733E-396,96,68194E-25601,32449E-30,004,54065E-574,32,60431E-599,13,01149E-315,42,61036E-325,6 - -
0.4 edu.kgi.roadRunner - - - - - - - - 4,54125E-50,00 - - 4,56944E-50,00 - - 6,68176E-20,001,01278E-20,001,34253E-10,002,60458E-50,003,01099E-30,002,60926E-30,002,07749E-30,00 - -
0.4 jsim1,18249E-128455,72477E-31,81,15625E-110,001,03861E-284,64,54124E-50,005,92983E-140,004,56944E-50,001,63266E-20,006,68176E-20,001,01278E-20,001,34253E-10,002,59784E-50,263,01099E-30,002,60926E-30,002,07749E-30,00 - -
0.6 BioUML1,67865E-121,05,50335E-337,62,98810E-36,45E78,81801E-30,005,87427E-50,001,58618E-1399,55,89205E-50,003,82320E-16559,30325E-20,001,47630E-394,56,72158E-454,53,33493E-50,003,12196E-30,002,96066E-30,002,64323E-30,007,47391E-150,00
0.6 ByoDyn1,69571E-120,008,81770E-30,001,60244E-13100,05,50316E-337,65,89405E-50,342,98799E-39,08E96,00000E-11,02E66,58775E-498,72,64414E-397,29,30338E-22471,47625E-30,005,87630E-576,23,33617E-598,93,12173E-35,42,96085E-312,0 - -
0.6 edu.kgi.roadRunner - - - - - - - - 5,87427E-50,00 - - 5,89205E-50,00 - - 9,30326E-20,002,67831E-20,001,88200E-10,003,33493E-50,003,12196E-30,002,96066E-30,002,64323E-30,00 - -
0.6 jsim5,66239E-103,33E41,91032E-21174,63211E-90,003,35169E-22805,87427E-50,003,29029E-110,005,89205E-50,005,06060E-20,009,30326E-20,002,67831E-20,001,88200E-10,003,32816E-50,203,12196E-30,002,96066E-30,002,64323E-30,00 - -
0.8 BioUML1,11567E-110,757,63505E-337,54,14871E-31,35E61,22201E-20,006,59544E-50,001,05924E-12100,06,60414E-50,003,82320E-12501,15602E-10,001,62151E-396,95,84859E-463,93,72376E-50,003,15139E-30,003,09268E-30,002,94166E-30,005,00781E-140,00
0.8 ByoDyn1,12405E-110,001,22197E-20,001,06734E-12100,07,63478E-337,56,60358E-50,124,14856E-31,21E88,00000E-11,21E65,73215E-499,52,94129E-397,51,15603E-11191,62145E-30,006,59487E-577,13,72321E-598,83,15155E-31,93,09261E-35,1 - -
0.8 edu.kgi.roadRunner - - - - - - - - 6,59544E-50,00 - - 6,60414E-50,00 - - 1,15603E-10,005,27125E-20,002,35140E-10,003,72376E-50,003,15141E-30,003,09268E-30,002,94166E-30,00 - -
0.8 jsim4,76814E-84,24E54,55444E-22733,08299E-70,007,61836E-25236,59544E-50,003,42936E-90,006,60414E-50,001,09189E-10,001,15603E-10,005,27125E-20,002,35140E-10,003,71698E-50,183,15141E-30,003,09268E-30,002,94166E-30,00 - -
1.0 BioUML4,94356E-110,669,88590E-337,45,37615E-39,03E41,58045E-20,006,91930E-50,004,71694E-12100,06,92304E-50,003,82320E-11071,35032E-10,001,76047E-398,05,08899E-471,13,89699E-50,003,15920E-30,003,13803E-30,003,07390E-30,002,23787E-130,00
1.0 ByoDyn4,97659E-110,001,58039E-20,004,74925E-12100,09,88554E-337,56,92096E-50,005,37595E-34,98E61,00000E01,44E64,98767E-499,73,07300E-397,71,35033E-155,41,76040E-30,006,91713E-577,53,89569E-598,83,15991E-30,693,13879E-32,1 - -
1.0 edu.kgi.roadRunner - - - - - - - - 6,91940E-50,00 - - 6,92315E-50,00 - - 1,35063E-10,008,68995E-20,002,75986E-10,003,89704E-50,003,15979E-30,003,13820E-30,003,07395E-30,00 - -
1.0 jsim1,17449E-62,36E68,58468E-24435,94526E-60,001,35997E-17606,91940E-50,001,08014E-70,006,92315E-50,001,84789E-10,001,35063E-10,008,68994E-20,002,75984E-10,003,89025E-50,173,15979E-30,003,13820E-30,003,07395E-30,00 - -
1.2 BioUML1,68711E-100,391,22402E-237,46,66220E-31,30E41,95449E-20,007,04954E-50,001,61812E-11100,07,05107E-50,003,82320E-143,11,51761E-10,001,89345E-398,54,42804E-476,63,96643E-50,003,16128E-30,003,15281E-30,003,12672E-30,007,70532E-130,00
1.2 ByoDyn1,69373E-100,001,95442E-20,001,62466E-11100,01,22397E-237,47,05265E-50,006,66195E-34,49E51,20000E01,70E64,33988E-499,83,12730E-397,91,51761E-118,71,89338E-30,007,05124E-577,73,96724E-598,73,16156E-30,193,15365E-30,83 - -
1.2 edu.kgi.roadRunner - - - - - - - - 7,05154E-50,00 - - 7,05316E-50,00 - - 1,52107E-10,001,27842E-10,003,11561E-10,003,96746E-50,003,16880E-30,003,15549E-30,003,12764E-30,00 - -
1.2 jsim1,25511E-57,41E61,37680E-16045,06638E-50,002,06492E-19567,05154E-50,001,48216E-60,007,05316E-50,002,67248E-10,001,52107E-10,001,27838E-10,003,11523E-10,003,96066E-50,153,16880E-30,003,15549E-30,003,12764E-30,00 - -
1.4 BioUML4,79238E-100,221,46833E-237,37,99918E-33,10E32,34173E-20,007,09827E-50,004,62100E-11100,07,09891E-50,283,82320E-19,71,66162E-10,002,02073E-398,83,85294E-480,93,99238E-50,003,16183E-30,003,15745E-30,143,14641E-30,282,20902E-120,00
1.4 ByoDyn4,80299E-100,002,34165E-20,004,63163E-11100,01,46828E-237,37,10059E-50,007,99889E-37,08E41,40000E01,97E63,77622E-499,93,14713E-398,11,66163E-10,002,02066E-30,007,09977E-577,43,99320E-598,73,16192E-30,003,15785E-30,00 - -
1.4 edu.kgi.roadRunner - - - - - - - - 7,11781E-50,00 - - 7,11916E-50,00 - - 1,68333E-10,001,73981E-10,003,42809E-10,114,00249E-50,003,21462E-30,003,17948E-30,003,15520E-30,00 - -
1.4 jsim7,54406E-51,57E71,97101E-17422,49938E-40,002,80810E-11,10E37,11781E-50,001,12893E-50,007,11916E-50,003,48506E-10,001,68333E-10,001,73943E-10,003,42446E-10,003,99569E-50,003,21462E-30,003,17948E-30,003,15520E-30,00 - -
1.6 BioUML1,18732E-90,241,72018E-237,29,37999E-31,01E32,73993E-20,007,11560E-50,001,15116E-10100,07,11591E-51,73,82320E-10,001,78561E-10,002,14256E-398,83,35252E-484,44,00161E-51,33,16197E-30,003,15888E-30,103,15340E-30,185,52523E-120,00
1.6 ByoDyn1,19018E-90,002,73983E-20,001,15409E-10100,01,72012E-237,27,11717E-50,009,37965E-31,66E41,60000E02,21E63,28576E-499,93,15393E-398,21,78563E-10,002,14249E-30,007,11727E-575,24,00240E-598,73,16210E-30,003,15922E-30,00 - -
1.6 edu.kgi.roadRunner - - - - - - - - 7,23307E-50,00 - - 7,23677E-50,00 - - 1,87658E-10,002,23883E-10,123,71550E-10,594,06254E-50,003,40246E-30,003,27313E-30,003,20544E-30,00 - -
1.6 jsim3,02075E-42,54E72,59971E-18498,46206E-40,003,53619E-11,19E37,23307E-50,005,60684E-50,007,23677E-50,004,23683E-110,81,87657E-10,002,23614E-10,003,69354E-10,004,05574E-50,003,40244E-30,003,27312E-30,003,20543E-30,00 - -
1.8 BioUML2,64503E-90,281,97832E-237,11,07980E-23923,14704E-20,007,12154E-50,002,57891E-10100,07,12173E-56,63,82320E-10,001,89236E-10,002,25917E-398,82,91710E-487,14,00477E-55,93,16201E-30,003,15931E-30,003,15579E-30,131,24298E-110,00
1.8 ByoDyn2,65245E-90,003,14692E-20,002,58662E-10100,01,97825E-237,17,12190E-50,001,07976E-25,23E31,80000E02,36E62,85900E-499,93,15656E-398,31,89238E-10,002,25910E-30,007,12191E-567,24,00577E-598,73,16215E-30,003,15977E-30,00 - -
1.8 edu.kgi.roadRunner - - - - - - - - 7,61478E-50,00 - - 7,62654E-50,00 - - 2,17773E-10,002,76331E-10,494,02283E-12,44,26050E-50,003,96160E-30,003,58263E-30,003,37132E-30,00 - -
1.8 jsim9,01397E-43,40E73,22755E-19262,19329E-30,004,21475E-11,24E37,61471E-50,002,02595E-40,007,62645E-50,004,90443E-128,32,17769E-10,002,74992E-10,003,92766E-10,004,25365E-50,003,96131E-30,003,58252E-30,003,37129E-30,00 - -
2.0 BioUML5,41105E-90,232,24160E-237,11,22471E-21623,56116E-20,007,12351E-50,005,30608E-10100,07,12367E-518,53,82320E-10,001,98426E-10,002,37080E-398,82,53824E-489,34,00582E-516,83,16202E-30,003,15944E-30,003,15659E-30,002,56842E-110,00
2.0 ByoDyn5,42328E-90,003,56104E-20,005,31897E-10100,02,24152E-237,17,12596E-50,001,22467E-22,03E32,00000E02,29E62,48766E-499,93,15732E-398,41,98428E-10,002,37073E-30,007,12549E-547,84,00672E-598,73,16207E-30,003,15972E-30,00 - -
2.0 edu.kgi.roadRunner - - - - - - - - 8,70663E-50,00 - - 8,73783E-50,00 - - 2,70696E-10,003,30353E-11,54,45067E-17,74,82064E-50,005,26576E-30,004,37699E-30,003,83731E-30,00 - -
2.0 jsim2,16283E-33,99E73,82782E-19754,67784E-30,004,82504E-11,25E38,70587E-50,005,74802E-40,008,73704E-50,005,48087E-143,42,70665E-10,003,25417E-10,004,13138E-10,004,81343E-50,005,26366E-30,004,37615E-30,003,83698E-30,00 - -
2.2 BioUML1,03209E-80,152,50895E-237,01,37217E-259,13,98058E-20,007,12416E-50,001,01799E-9100,07,12430E-537,23,82320E-10,002,06339E-10,002,47767E-398,82,20857E-491,14,00617E-534,23,16202E-30,003,15948E-30,003,15684E-30,004,94928E-110,00
2.2 ByoDyn1,03368E-80,003,98045E-20,001,01968E-9100,02,50886E-237,07,12481E-50,001,37212E-29152,20000E01,94E62,16456E-499,93,15720E-398,52,06340E-10,002,47760E-30,007,12507E-516,84,00675E-598,73,16202E-30,003,15955E-30,00 - -
2.2 edu.kgi.roadRunner - - - - - - - - 1,12794E-40,00 - - 1,13510E-40,00 - - 3,61961E-10,003,84742E-13,85,18666E-120,46,10178E-50,007,80133E-30,146,04462E-30,004,90009E-30,00 - -
2.2 jsim4,39891E-34,26E74,38206E-11,00E38,62285E-30,005,35928E-11,25E31,12744E-40,001,35183E-30,001,13459E-40,005,96841E-156,13,61809E-10,003,70785E-10,004,30864E-10,006,09248E-50,007,79046E-30,006,03979E-30,004,89799E-30,00 - -
2.4 BioUML1,85641E-80,102,77940E-236,91,52165E-27,04,40371E-20,007,12436E-50,001,84190E-9100,07,12450E-557,23,82320E-10,002,13150E-10,002,57997E-398,81,92173E-492,64,00628E-543,83,16203E-30,003,15949E-30,003,15693E-30,008,99521E-110,00
2.4 ByoDyn1,85831E-80,004,40356E-20,001,84398E-9100,02,77931E-236,97,12429E-50,001,52160E-24552,40000E01,44E61,88342E-4100,03,15701E-398,52,13152E-10,002,57990E-30,007,12380E-50,004,00630E-598,73,16203E-30,003,15950E-30,00 - -
2.4 edu.kgi.roadRunner - - - - - - - - 1,65326E-40,15 - - 1,66853E-40,00 - - 5,08749E-10,114,36237E-17,56,52567E-146,28,55469E-50,211,21049E-20,359,04367E-30,226,94400E-30,14 - -
2.4 jsim7,87315E-34,24E74,87854E-11,01E31,42172E-20,005,81660E-11,22E31,65078E-40,002,74091E-30,001,66597E-40,006,37389E-166,75,08185E-10,004,05815E-10,004,46287E-10,008,53670E-50,001,20627E-20,009,02338E-30,006,93438E-30,00 - -
2.6 BioUML3,17644E-80,003,05207E-236,81,67267E-20,004,82911E-20,007,12443E-50,003,17053E-9100,07,12457E-573,23,82320E-10,002,19015E-10,002,67790E-398,81,67214E-493,84,00631E-543,83,16203E-30,003,15949E-30,003,15695E-30,001,55545E-100,00
2.6 ByoDyn3,17882E-80,004,82896E-20,003,17322E-9100,03,05197E-236,87,12614E-5