Test: BIOMD0000000035.xml - Ok

test: BIOMD0000000035.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000035.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6619651140.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: DAp  A  C  R  DR  DA  DRp  MR  MA 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation DAp A C R DR DA DRp MR MA
var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core - - 0,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,00 - - 0,00000E00,000,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,001,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 ByoDyn4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 Jarnac4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 MathSBML4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 Oscill8 Core - - 5,05101E10,002,05789E-10,005,12796E-20,006,83470E-10,005,32113E-10,00 - - 1,03716E00,001,39215E10,00
0.2 SBToolbox24,68243E-10,005,05322E10,002,06059E-10,135,13351E-20,106,83241E-10,005,31757E-10,003,16759E-10,001,03796E00,001,39281E10,00
0.2 SBWOdeSolver4,67887E-10,005,05101E10,002,05789E-10,005,12796E-20,006,83470E-10,005,32113E-10,003,16530E-10,001,03716E00,001,39215E10,00
0.2 copasi4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 edu.kgi.roadRunner4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.2 jsim4,67900E-10,005,05048E10,002,05709E-10,005,12831E-20,006,83471E-10,005,32100E-10,003,16529E-10,001,03703E00,001,39212E10,00
0.4 BioUML8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.4 ByoDyn8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.4 Jarnac8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.4 MathSBML8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.4 Oscill8 Core - - 2,74368E20,003,54552E00,006,35872E-20,002,70025E-10,001,56406E-10,00 - - 6,27591E00,003,57077E10,00
0.4 SBToolbox28,43688E-10,002,74454E20,003,54796E00,006,35962E-20,002,69896E-10,001,56312E-10,007,30104E-10,006,27842E00,003,57153E10,00
0.4 SBWOdeSolver8,43594E-10,002,74368E20,003,54552E00,006,35871E-20,002,70025E-10,001,56406E-10,007,29975E-10,006,27591E00,003,57077E10,00
0.4 copasi8,43605E-10,002,74364E20,003,54520E00,006,35873E-20,002,70012E-10,001,56395E-10,007,29988E-10,006,27582E00,003,57085E10,00
0.4 edu.kgi.roadRunner8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.4 jsim8,43605E-10,002,74365E20,003,54520E00,006,35873E-20,002,70011E-10,001,56395E-10,007,29989E-10,006,27584E00,003,57085E10,00
0.6 BioUML9,20980E-10,005,85207E20,001,33036E10,006,83077E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.6 ByoDyn9,20980E-10,005,85207E20,001,33036E10,006,83077E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.6 Jarnac9,20980E-10,005,85207E20,001,33036E10,006,83077E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.6 MathSBML9,20980E-10,005,85207E20,001,33036E10,006,83077E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.6 Oscill8 Core - - 5,85205E20,001,33041E10,006,83079E-20,001,46432E-10,007,90229E-20,00 - - 1,33377E10,004,42476E10,00
0.6 SBToolbox29,21001E-10,005,85310E20,001,33095E10,006,83151E-20,001,46384E-10,007,89961E-20,008,53616E-10,001,33404E10,004,42505E10,00
0.6 SBWOdeSolver9,20977E-10,005,85205E20,001,33041E10,006,83078E-20,001,46432E-10,007,90229E-20,008,53568E-10,001,33377E10,004,42476E10,00
0.6 copasi9,20980E-10,005,85205E20,001,33036E10,006,83076E-20,001,46428E-10,007,90202E-20,008,53572E-10,001,33376E10,004,42479E10,00
0.6 edu.kgi.roadRunner9,20980E-10,005,85207E20,001,33036E10,006,83077E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.6 jsim9,20980E-10,005,85207E20,001,33036E10,006,83076E-20,001,46427E-10,007,90200E-20,008,53573E-10,001,33377E10,004,42479E10,00
0.8 BioUML9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41309E-20,008,97305E-10,002,04326E10,004,68482E10,00
0.8 ByoDyn9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41309E-20,008,97305E-10,002,04326E10,004,68482E10,00
0.8 Jarnac9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41309E-20,008,97305E-10,002,04326E10,004,68482E10,00
0.8 MathSBML9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41310E-20,008,97305E-10,002,04326E10,004,68482E10,00
0.8 Oscill8 Core - - 8,75130E20,003,02026E10,007,55929E-20,001,02697E-10,005,41320E-20,00 - - 2,04325E10,004,68481E10,00
0.8 SBToolbox29,45877E-10,008,75227E20,003,02109E10,007,56016E-20,001,02674E-10,005,41186E-20,008,97326E-10,002,04353E10,004,68492E10,00
0.8 SBWOdeSolver9,45868E-10,008,75130E20,003,02026E10,007,55929E-20,001,02697E-10,005,41321E-20,008,97303E-10,002,04325E10,004,68481E10,00
0.8 copasi9,45869E-10,008,75134E20,003,02019E10,007,55927E-20,001,02695E-10,005,41310E-20,008,97305E-10,002,04325E10,004,68482E10,00
0.8 edu.kgi.roadRunner9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41309E-20,008,97305E-10,002,04326E10,004,68482E10,00
0.8 jsim9,45869E-10,008,75135E20,003,02019E10,007,55927E-20,001,02695E-10,005,41310E-20,008,97305E-10,002,04326E10,004,68482E10,00
1.0 BioUML9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 ByoDyn9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 Jarnac9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 MathSBML9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 Oscill8 Core - - 1,11675E30,005,40138E10,008,49017E-20,008,22467E-20,004,28884E-20,00 - - 2,71367E10,004,77767E10,00
1.0 SBToolbox29,57120E-10,001,11681E30,005,40240E10,008,49126E-20,008,22328E-20,004,28802E-20,009,17766E-10,002,71396E10,004,77780E10,00
1.0 SBWOdeSolver9,57112E-10,001,11675E30,005,40138E10,008,49016E-20,008,22467E-20,004,28884E-20,009,17753E-10,002,71367E10,004,77767E10,00
1.0 copasi9,57112E-10,001,11676E30,005,40130E10,008,49015E-20,008,22458E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 edu.kgi.roadRunner9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.0 jsim9,57112E-10,001,11676E30,005,40131E10,008,49015E-20,008,22457E-20,004,28879E-20,009,17754E-10,002,71368E10,004,77768E10,00
1.2 BioUML9,63203E-10,001,30945E30,008,42831E10,009,58199E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 ByoDyn9,63203E-10,001,30945E30,008,42831E10,009,58199E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 Jarnac9,63203E-10,001,30945E30,008,42831E10,009,58199E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 MathSBML9,63203E-10,001,30945E30,008,42831E10,009,58199E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 Oscill8 Core - - 1,30944E30,008,42839E10,009,58201E-20,007,09807E-20,003,67969E-20,00 - - 3,33473E10,004,81959E10,00
1.2 SBToolbox29,63212E-10,001,30948E30,008,42956E10,009,58372E-20,007,09678E-20,003,67898E-20,009,29028E-10,003,33501E10,004,81962E10,00
1.2 SBWOdeSolver9,63203E-10,001,30944E30,008,42839E10,009,58200E-20,007,09807E-20,003,67968E-20,009,29019E-10,003,33473E10,004,81959E10,00
1.2 copasi9,63203E-10,001,30945E30,008,42830E10,009,58198E-20,007,09801E-20,003,67966E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 edu.kgi.roadRunner9,63203E-10,001,30945E30,008,42831E10,009,58199E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.2 jsim9,63203E-10,001,30945E30,008,42831E10,009,58198E-20,007,09801E-20,003,67965E-20,009,29020E-10,003,33474E10,004,81959E10,00
1.4 BioUML9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31539E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 ByoDyn9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31539E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 Jarnac9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31539E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 MathSBML9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31538E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 Oscill8 Core - - 1,45854E30,001,20508E20,001,08214E-10,006,41797E-20,003,31540E-20,00 - - 3,90502E10,004,84223E10,00
1.4 SBToolbox29,66850E-10,001,45859E30,001,20518E20,001,08229E-10,006,41724E-20,003,31500E-20,009,35824E-10,003,90526E10,004,84227E10,00
1.4 SBWOdeSolver9,66846E-10,001,45854E30,001,20508E20,001,08214E-10,006,41797E-20,003,31540E-20,009,35820E-10,003,90502E10,004,84223E10,00
1.4 copasi9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31538E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 edu.kgi.roadRunner9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31539E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.4 jsim9,66846E-10,001,45855E30,001,20507E20,001,08214E-10,006,41793E-20,003,31538E-20,009,35821E-10,003,90503E10,004,84224E10,00
1.6 BioUML9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 ByoDyn9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 Jarnac9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 MathSBML9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 Oscill8 Core - - 1,57018E30,001,62186E20,001,22087E-10,005,98839E-20,003,08663E-20,00 - - 4,42620E10,004,85580E10,00
1.6 SBToolbox29,69136E-10,001,57023E30,001,62196E20,001,22103E-10,005,98765E-20,003,08626E-20,009,40123E-10,004,42642E10,004,85582E10,00
1.6 SBWOdeSolver9,69134E-10,001,57019E30,001,62186E20,001,22087E-10,005,98838E-20,003,08663E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 copasi9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 edu.kgi.roadRunner9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.6 jsim9,69134E-10,001,57019E30,001,62185E20,001,22086E-10,005,98836E-20,003,08662E-20,009,40116E-10,004,42621E10,004,85580E10,00
1.8 BioUML9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
1.8 ByoDyn9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
1.8 Jarnac9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
1.8 MathSBML9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
1.8 Oscill8 Core - - 1,65003E30,002,08839E20,001,37507E-10,005,71479E-20,002,94146E-20,00 - - 4,90107E10,004,86429E10,00
1.8 SBToolbox29,70589E-10,001,65011E30,002,08851E20,001,37524E-10,005,71426E-20,002,94114E-20,009,42860E-10,004,90131E10,004,86433E10,00
1.8 SBWOdeSolver9,70585E-10,001,65003E30,002,08839E20,001,37507E-10,005,71479E-20,002,94145E-20,009,42852E-10,004,90107E10,004,86429E10,00
1.8 copasi9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90107E10,004,86429E10,00
1.8 edu.kgi.roadRunner9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
1.8 jsim9,70586E-10,001,65004E30,002,08838E20,001,37507E-10,005,71478E-20,002,94145E-20,009,42852E-10,004,90108E10,004,86429E10,00
2.0 BioUML9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 ByoDyn9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 Jarnac9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 MathSBML9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 Oscill8 Core - - 1,70303E30,002,60020E20,001,54589E-10,005,54656E-20,002,85239E-20,00 - - 5,33281E10,004,86960E10,00
2.0 SBToolbox29,71474E-10,001,70310E30,002,60036E20,001,54602E-10,005,54618E-20,002,85218E-20,009,44538E-10,005,33306E10,004,86964E10,00
2.0 SBWOdeSolver9,71476E-10,001,70304E30,002,60020E20,001,54588E-10,005,54655E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 copasi9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 edu.kgi.roadRunner9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.0 jsim9,71476E-10,001,70304E30,002,60019E20,001,54588E-10,005,54654E-20,002,85238E-20,009,44535E-10,005,33281E10,004,86960E10,00
2.2 BioUML9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 ByoDyn9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 Jarnac9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 MathSBML9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 Oscill8 Core - - 1,73341E30,003,15314E20,001,73477E-10,005,45448E-20,002,80371E-20,00 - - 5,72467E10,004,87271E10,00
2.2 SBToolbox29,71966E-10,001,73348E30,003,15329E20,001,73484E-10,005,45416E-20,002,80355E-20,009,45463E-10,005,72489E10,004,87276E10,00
2.2 SBWOdeSolver9,71963E-10,001,73341E30,003,15314E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 copasi9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 edu.kgi.roadRunner9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.2 jsim9,71963E-10,001,73342E30,003,15313E20,001,73476E-10,005,45447E-20,002,80370E-20,009,45455E-10,005,72468E10,004,87271E10,00
2.4 BioUML9,72141E-10,001,74474E30,003,74337E20,001,94350E-10,005,42085E-20,002,78593E-20,009,45792E-10,006,07984E10,004,87422E10,00
2.4 ByoDyn9,72141E-10,001,74474E30,003,74337E20,001,94350E-10,005,42085E-20,002,78593E-20,009,45792E-10,006,07984E10,004,87422E10,00
2.4 Jarnac9,72141E-10,00