Test: BIOMD0000000037.xml - Ok

test: BIOMD0000000037.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000037.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6621175859.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: V  prepreS  Pr  Yi  S  Xi  Pi  Ya  Pfr  preS  Xa 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation V prepreS Pr Yi S Xi Pi Ya Pfr preS Xa
var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 ByoDyn3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 Jarnac3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 MathSBML3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 Oscill8 Core3,00000E10,002,00000E20,000,00000E00,00 - - 0,00000E00,006,00000E00,00 - - 9,00000E-10,001,00000E10,000,00000E00,00 - -
0.0 SBToolbox23,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 VCell3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 copasi3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.0 jsim3,00000E10,002,00000E20,000,00000E00,000,00000E00,000,00000E00,006,00000E00,000,00000E00,009,00000E-10,001,00000E10,000,00000E00,000,00000E00,00
0.2 BioUML3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.2 ByoDyn3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.2 Jarnac3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45053E-30,005,98878E00,001,97354E-30,009,00000E-10,009,80199E00,002,90976E-20,001,12214E-20,00
0.2 MathSBML3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90972E-20,001,12213E-20,00
0.2 Oscill8 Core3,36254E10,001,99970E20,001,96040E-10,00 - - 1,45083E-30,005,98878E00,00 - - 9,00000E-10,009,80199E00,002,91010E-20,00 - -
0.2 SBToolbox23,36257E10,001,99970E20,001,96038E-10,000,00000E00,001,45531E-30,315,98882E00,001,97357E-30,009,00000E-10,009,80200E00,002,91232E-20,001,12208E-20,00
0.2 SBWOdeSolver3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45083E-30,005,98878E00,001,97363E-30,009,00000E-10,009,80199E00,002,91010E-20,001,12218E-20,00
0.2 VCell3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.2 copasi3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.2 edu.kgi.roadRunner3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.2 jsim3,36254E10,001,99970E20,001,96040E-10,000,00000E00,001,45047E-30,005,98878E00,001,97353E-30,009,00000E-10,009,80199E00,002,90971E-20,001,12213E-20,00
0.4 BioUML3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 ByoDyn3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 Jarnac3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85370E-20,005,95806E00,007,78992E-30,009,00000E-10,009,60789E00,002,11573E-10,004,19424E-20,00
0.4 MathSBML3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78984E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 Oscill8 Core3,65936E10,001,99769E20,003,84315E-10,00 - - 1,85380E-20,005,95806E00,00 - - 9,00000E-10,009,60789E00,002,11579E-10,00 - -
0.4 SBToolbox23,65936E10,001,99770E20,003,84320E-10,000,00000E00,001,85701E-20,175,95808E00,007,78990E-30,009,00000E-10,009,60788E00,002,11648E-10,004,19405E-20,00
0.4 SBWOdeSolver3,65936E10,001,99769E20,003,84315E-10,000,00000E00,001,85380E-20,005,95806E00,007,79001E-30,009,00000E-10,009,60789E00,002,11579E-10,004,19428E-20,00
0.4 VCell3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 copasi3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 edu.kgi.roadRunner3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.4 jsim3,65936E10,001,99769E20,003,84316E-10,000,00000E00,001,85357E-20,005,95806E00,007,78983E-30,009,00000E-10,009,60789E00,002,11567E-10,004,19421E-20,00
0.6 BioUML3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26848E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 ByoDyn3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26848E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 Jarnac3,90224E10,001,99259E20,005,65058E-10,000,00000E00,008,26927E-20,005,91187E00,001,72962E-20,009,00000E-10,009,41765E00,006,48507E-10,008,81338E-20,00
0.6 MathSBML3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26849E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 Oscill8 Core3,90224E10,001,99259E20,005,65058E-10,00 - - 8,26908E-20,005,91187E00,00 - - 9,00000E-10,009,41765E00,006,48503E-10,00 - -
0.6 SBToolbox23,90224E10,001,99262E20,005,65058E-10,000,00000E00,008,28021E-20,135,91186E00,001,72954E-20,009,00000E-10,009,41766E00,006,48624E-10,008,81267E-20,00
0.6 SBWOdeSolver3,90224E10,001,99259E20,005,65058E-10,000,00000E00,008,26908E-20,005,91187E00,001,72962E-20,009,00000E-10,009,41765E00,006,48503E-10,008,81338E-20,00
0.6 VCell3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26848E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 copasi3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26848E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 edu.kgi.roadRunner3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26849E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.6 jsim3,90224E10,001,99259E20,005,65059E-10,000,00000E00,008,26848E-20,005,91187E00,001,72959E-20,009,00000E-10,009,41765E00,006,48481E-10,008,81329E-20,00
0.8 BioUML4,09735E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 ByoDyn4,09735E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 Jarnac4,09734E10,001,98333E20,007,38492E-10,000,00000E00,002,32085E-10,005,85373E00,003,03441E-20,009,00000E-10,009,23116E00,001,39465E00,001,46271E-10,00
0.8 MathSBML4,09735E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 Oscill8 Core4,09734E10,001,98334E20,007,38492E-10,00 - - 2,32069E-10,005,85373E00,00 - - 9,00000E-10,009,23116E00,001,39461E00,00 - -
0.8 SBToolbox24,09752E10,001,98335E20,007,38491E-10,000,00000E00,002,32320E-10,105,85375E00,003,03432E-20,009,00000E-10,009,23114E00,001,39479E00,001,46258E-10,00
0.8 SBWOdeSolver4,09734E10,001,98334E20,007,38492E-10,000,00000E00,002,32069E-10,005,85373E00,003,03438E-20,009,00000E-10,009,23116E00,001,39461E00,001,46270E-10,00
0.8 VCell4,09735E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 copasi4,09734E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 edu.kgi.roadRunner4,09734E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
0.8 jsim4,09735E10,001,98334E20,007,38493E-10,000,00000E00,002,32058E-10,005,85373E00,003,03435E-20,009,00000E-10,009,23116E00,001,39458E00,001,46269E-10,00
1.0 BioUML4,21560E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 ByoDyn4,21560E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 Jarnac4,21555E10,001,96917E20,009,04834E-10,000,00000E00,005,03697E-10,005,78669E00,004,67898E-20,009,00000E-10,009,04838E00,002,46825E00,002,13311E-10,00
1.0 MathSBML4,21560E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 Oscill8 Core4,21558E10,001,96917E20,009,04837E-10,00 - - 5,03645E-10,005,78669E00,00 - - 9,00000E-10,009,04837E00,002,46814E00,00 - -
1.0 SBToolbox24,21707E10,001,96918E20,009,04845E-10,000,00000E00,005,04115E-10,005,78675E00,004,67869E-20,009,00000E-10,009,04840E00,002,46816E00,002,13287E-10,00
1.0 SBWOdeSolver4,21559E10,001,96917E20,009,04837E-10,000,00000E00,005,03645E-10,005,78669E00,004,67888E-20,009,00000E-10,009,04837E00,002,46814E00,002,13309E-10,00
1.0 VCell4,21560E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 copasi4,21561E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 edu.kgi.roadRunner4,21564E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.0 jsim4,21560E10,001,96917E20,009,04837E-10,000,00000E00,005,03628E-10,005,78669E00,004,67884E-20,009,00000E-10,009,04837E00,002,46811E00,002,13308E-10,00
1.2 BioUML4,11624E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 ByoDyn4,11624E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 Jarnac4,11603E10,001,94961E20,001,06430E00,000,00000E00,009,28295E-10,005,71334E00,006,64934E-20,009,00000E-10,008,86921E00,003,85934E00,002,86662E-10,00
1.2 MathSBML4,11624E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 Oscill8 Core4,11620E10,001,94961E20,001,06430E00,00 - - 9,28186E-10,005,71334E00,00 - - 9,00000E-10,008,86920E00,003,85916E00,00 - -
1.2 SBToolbox24,11691E10,001,94963E20,001,06426E00,000,00000E00,009,28884E-10,005,71336E00,006,64874E-20,009,00000E-10,008,86917E00,003,85887E00,002,86625E-10,00
1.2 SBWOdeSolver4,11618E10,001,94961E20,001,06430E00,000,00000E00,009,28186E-10,005,71334E00,006,64915E-20,009,00000E-10,008,86920E00,003,85916E00,002,86660E-10,00
1.2 VCell4,11624E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 copasi4,11625E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 edu.kgi.roadRunner4,11629E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.2 jsim4,11624E10,001,94961E20,001,06430E00,000,00000E00,009,28163E-10,005,71334E00,006,64911E-20,009,00000E-10,008,86920E00,003,85912E00,002,86659E-10,00
1.4 BioUML3,70201E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 ByoDyn3,70201E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 Jarnac3,70168E10,001,92442E20,001,21709E00,000,00000E00,001,52759E00,005,63585E00,008,93194E-20,009,00000E-10,008,69359E00,005,53694E00,003,64149E-10,00
1.4 MathSBML3,70201E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 Oscill8 Core3,70200E10,001,92442E20,001,21710E00,00 - - 1,52741E00,005,63585E00,00 - - 9,00000E-10,008,69358E00,005,53668E00,00 - -
1.4 SBToolbox23,69850E10,001,92440E20,001,21715E00,000,00000E00,001,52798E00,005,63586E00,008,93108E-20,009,00000E-10,008,69362E00,005,53597E00,003,64107E-10,00
1.4 SBWOdeSolver3,70199E10,001,92442E20,001,21710E00,000,00000E00,001,52741E00,005,63585E00,008,93166E-20,009,00000E-10,008,69358E00,005,53668E00,003,64146E-10,00
1.4 VCell3,70201E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 copasi3,70202E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 edu.kgi.roadRunner3,70202E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.4 jsim3,70201E10,001,92442E20,001,21710E00,000,00000E00,001,52738E00,005,63585E00,008,93161E-20,009,00000E-10,008,69358E00,005,53665E00,003,64146E-10,00
1.6 BioUML3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 ByoDyn3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 Jarnac3,15014E10,001,89357E20,001,36342E00,000,00000E00,002,31302E00,005,55603E00,001,15137E-10,009,00000E-10,008,52144E00,007,45531E00,004,43968E-10,00
1.6 MathSBML3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 Oscill8 Core3,15047E10,001,89358E20,001,36343E00,00 - - 2,31272E00,005,55603E00,00 - - 9,00000E-10,008,52144E00,007,45498E00,00 - -
1.6 SBToolbox23,14536E10,151,89357E20,001,36345E00,000,00000E00,002,31308E00,005,55606E00,001,15122E-10,009,00000E-10,008,52146E00,007,45394E00,004,43925E-10,00
1.6 SBWOdeSolver3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31272E00,005,55603E00,001,15133E-10,009,00000E-10,008,52144E00,007,45498E00,004,43966E-10,00
1.6 VCell3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 copasi3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 edu.kgi.roadRunner3,15049E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.6 jsim3,15047E10,001,89358E20,001,36343E00,000,00000E00,002,31269E00,005,55603E00,001,15132E-10,009,00000E-10,008,52144E00,007,45495E00,004,43966E-10,00
1.8 BioUML2,62110E10,001,85725E20,001,50349E00,000,00000E00,003,28514E00,005,47535E00,001,43812E-10,009,00000E-10,008,35270E00,009,55890E00,005,24649E-10,00
1.8 ByoDyn2,62110E10,001,85725E20,001,50349E00,000,00000E00,003,28514E00,005,47535E00,00