Test: BIOMD0000000038.xml - Ok

test: BIOMD0000000038.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000038.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: EIICBPGlc  EIICBP  HPrP  EIP  EIIA  EIICB  HPr  PyrPI  EIPHPr  HPrPIIA  EIIAP  EIIAPIICB  EI 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation EIICBPGlc EIICBP HPrP EIP EIIA EIICB HPr PyrPI EIPHPr HPrPIIA EIIAP EIIAPIICB EI
var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 ByoDyn0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 Jarnac0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 MathSBML0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 Oscill8 Core0,00000E00,00 - - - - 2,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,00 - - 0,00000E00,002,00000E10,00 - - 3,00000E00,00
0.0 SBToolbox20,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 SBWOdeSolver0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 VCell0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 copasi0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,004,25098E-160,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.0 jsim0,00000E00,005,00000E00,002,50000E10,002,00000E00,002,00000E10,005,00000E00,002,50000E10,000,00000E00,000,00000E00,000,00000E00,002,00000E10,000,00000E00,003,00000E00,00
0.2 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
0.2 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
0.2 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.2 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
0.4 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
0.4 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.4 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
0.6 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
0.6 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.6 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91907E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
0.8 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
0.8 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
0.8 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41482E-10,001,41281E00,001,27613E00,003,04875E00,004,91907E-10,001,84500E10,001,54357E10,005,47284E00,002,69273E-10,00
1.0 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
1.0 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
1.0 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.0 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41482E-10,001,41281E00,001,27613E00,003,04874E00,004,91907E-10,001,84500E10,001,54357E10,005,47284E00,002,69273E-10,00
1.2 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
1.2 SBToolbox22,99480E00,001,19540E-10,002,97820E10,001,19010E00,006,41480E-10,001,41280E00,001,27610E00,003,04880E00,004,91910E-10,001,84500E10,001,54360E10,005,47280E00,002,69270E-10,00
1.2 SBWOdeSolver2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 VCell2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 copasi2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 edu.kgi.roadRunner2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.2 jsim2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.4 BioUML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41482E-10,001,41282E00,001,27613E00,003,04874E00,004,91906E-10,001,84500E10,001,54356E10,005,47284E00,002,69273E-10,00
1.4 ByoDyn2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.4 Jarnac2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.4 MathSBML2,99481E00,001,19536E-10,002,97820E10,001,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,004,91908E-10,001,84500E10,001,54357E10,005,47284E00,002,69274E-10,00
1.4 Oscill8 Core2,99481E00,00 - - - - 1,19006E00,006,41481E-10,001,41281E00,001,27613E00,003,04875E00,00 - - 1,84500E10,001,54357E10,00 - - 2,69274E-10,00
1.4 SBToolbox22,99480E00,001,19540E-10,002,97820E1