Test: BIOMD0000000039.xml - Ok

test: BIOMD0000000039.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000039.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6621933497.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: CaER  Pr  CaPr  CaM  Ca_cyt 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation CaER Pr CaPr CaM Ca_cyt
var error var error var error var error var error
0.0 BioUML7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 ByoDyn7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 Jarnac7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 MathSBML7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 Oscill8 Core - - - - 8,54500E10,002,90000E-10,003,50000E-10,00
0.0 SBToolbox27,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 SBWOdeSolver7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 copasi7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 edu.kgi.roadRunner7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.0 jsim7,60000E-10,003,45500E10,008,54500E10,002,90000E-10,003,50000E-10,00
0.2 BioUML7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 ByoDyn7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 Jarnac7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 MathSBML7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 Oscill8 Core - - - - 8,55310E10,003,08307E-10,003,54649E-10,00
0.2 SBToolbox27,20252E-10,003,44691E10,008,55309E10,003,08297E-10,003,54848E-10,00
0.2 SBWOdeSolver7,20292E-10,003,44690E10,008,55310E10,003,08308E-10,003,54646E-10,00
0.2 copasi7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 edu.kgi.roadRunner7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.2 jsim7,20291E-10,003,44690E10,008,55310E10,003,08308E-10,003,54649E-10,00
0.4 BioUML7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 ByoDyn7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 Jarnac7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 MathSBML7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 Oscill8 Core - - - - 8,55914E10,003,14394E-10,003,18704E-10,00
0.4 SBToolbox27,07991E-10,003,44081E10,008,55919E10,003,14407E-10,003,18876E-10,00
0.4 SBWOdeSolver7,08082E-10,003,44086E10,008,55914E10,003,14394E-10,003,18704E-10,00
0.4 copasi7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 edu.kgi.roadRunner7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.4 jsim7,08081E-10,003,44086E10,008,55914E10,003,14395E-10,003,18704E-10,00
0.6 BioUML7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 ByoDyn7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 Jarnac7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 MathSBML7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 Oscill8 Core - - - - 8,56286E10,003,13615E-10,002,88253E-10,00
0.6 SBToolbox27,07033E-10,003,43711E10,008,56289E10,003,13617E-10,002,88436E-10,00
0.6 SBWOdeSolver7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88254E-10,00
0.6 copasi7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 edu.kgi.roadRunner7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.6 jsim7,07162E-10,003,43714E10,008,56286E10,003,13615E-10,002,88253E-10,00
0.8 BioUML7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 ByoDyn7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 Jarnac7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 MathSBML7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 Oscill8 Core - - - - 8,56459E10,003,10592E-10,002,60637E-10,00
0.8 SBToolbox27,12608E-10,003,43540E10,008,56460E10,003,10594E-10,002,60849E-10,00
0.8 SBWOdeSolver7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60638E-10,00
0.8 copasi7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 edu.kgi.roadRunner7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
0.8 jsim7,12775E-10,003,43541E10,008,56459E10,003,10592E-10,002,60637E-10,00
1.0 BioUML7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.0 ByoDyn7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.0 Jarnac7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.0 MathSBML7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.0 Oscill8 Core - - - - 8,56441E10,003,07066E-10,002,32186E-10,00
1.0 SBToolbox27,23650E-10,003,43550E10,008,56450E10,003,07058E-10,002,32492E-10,13
1.0 SBWOdeSolver7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32185E-10,00
1.0 copasi7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32185E-10,00
1.0 edu.kgi.roadRunner7,23865E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.0 jsim7,23864E-10,003,43559E10,008,56441E10,003,07066E-10,002,32186E-10,00
1.2 BioUML7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.2 ByoDyn7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.2 Jarnac7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.2 MathSBML7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.2 Oscill8 Core - - - - 8,56207E10,003,03869E-10,001,96088E-10,00
1.2 SBToolbox27,41614E-10,003,43788E10,008,56212E10,003,03857E-10,001,96610E-10,26
1.2 SBWOdeSolver7,41922E-10,003,43793E10,008,56207E10,003,03870E-10,001,96088E-10,00
1.2 copasi7,41921E-10,003,43793E10,008,56207E10,003,03869E-10,001,96089E-10,00
1.2 edu.kgi.roadRunner7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.2 jsim7,41920E-10,003,43792E10,008,56208E10,003,03869E-10,001,96091E-10,00
1.4 BioUML7,71632E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.4 ByoDyn7,71632E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.4 Jarnac7,71632E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.4 MathSBML7,71631E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.4 Oscill8 Core - - - - 8,55666E10,003,01644E-10,001,40242E-10,00
1.4 SBToolbox27,71272E-10,003,44324E10,008,55676E10,003,01621E-10,001,40752E-10,36
1.4 SBWOdeSolver7,71633E-10,003,44334E10,008,55666E10,003,01644E-10,001,40243E-10,00
1.4 copasi7,71633E-10,003,44334E10,008,55666E10,003,01644E-10,001,40242E-10,00
1.4 edu.kgi.roadRunner7,71632E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.4 jsim7,71632E-10,003,44333E10,008,55667E10,003,01644E-10,001,40244E-10,00
1.6 BioUML8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02676E-20,00
1.6 ByoDyn8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02676E-20,00
1.6 Jarnac8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02676E-20,00
1.6 MathSBML8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02677E-20,00
1.6 Oscill8 Core - - - - 8,54701E10,003,00652E-10,008,02760E-20,00
1.6 SBToolbox28,11440E-10,003,45290E10,008,54710E10,003,00625E-10,008,03814E-20,13
1.6 SBWOdeSolver8,11758E-10,003,45299E10,008,54701E10,003,00652E-10,008,02767E-20,00
1.6 copasi8,11761E-10,003,45299E10,008,54701E10,003,00652E-10,008,02662E-20,00
1.6 edu.kgi.roadRunner8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02676E-20,00
1.6 jsim8,11760E-10,003,45299E10,008,54701E10,003,00652E-10,008,02676E-20,00
1.8 BioUML8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
1.8 ByoDyn8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
1.8 Jarnac8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
1.8 MathSBML8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
1.8 Oscill8 Core - - - - 8,53455E10,003,00219E-10,005,91983E-20,00
1.8 SBToolbox28,48309E-10,003,46529E10,008,53471E10,003,00194E-10,005,91411E-20,00
1.8 SBWOdeSolver8,48601E-10,003,46545E10,008,53455E10,003,00219E-10,005,91987E-20,00
1.8 copasi8,48603E-10,003,46545E10,008,53455E10,003,00220E-10,005,91951E-20,00
1.8 edu.kgi.roadRunner8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
1.8 jsim8,48602E-10,003,46545E10,008,53455E10,003,00219E-10,005,91954E-20,00
2.0 BioUML8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 ByoDyn8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 Jarnac8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 MathSBML8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 Oscill8 Core - - - - 8,52149E10,002,99878E-10,005,69311E-20,00
2.0 SBToolbox28,81880E-10,003,47838E10,008,52162E10,002,99852E-10,005,68834E-20,00
2.0 SBWOdeSolver8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69310E-20,00
2.0 copasi8,82174E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 edu.kgi.roadRunner8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.0 jsim8,82173E-10,003,47851E10,008,52149E10,002,99878E-10,005,69305E-20,00
2.2 BioUML9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.2 ByoDyn9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.2 Jarnac9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.2 MathSBML9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.2 Oscill8 Core - - - - 8,50846E10,002,99537E-10,005,82067E-20,00
2.2 SBToolbox29,14474E-10,003,49145E10,008,50855E10,002,99512E-10,005,81650E-20,00
2.2 SBWOdeSolver9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82066E-20,00
2.2 copasi9,14759E-10,003,49154E10,008,50846E10,002,99537E-10,005,82066E-20,00
2.2 edu.kgi.roadRunner9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.2 jsim9,14758E-10,003,49154E10,008,50846E10,002,99537E-10,005,82065E-20,00
2.4 BioUML9,46732E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.4 ByoDyn9,46732E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.4 Jarnac9,46732E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.4 MathSBML9,46731E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.4 Oscill8 Core - - - - 8,49560E10,002,99181E-10,006,03429E-20,00
2.4 SBToolbox29,46458E-10,003,50426E10,008,49574E10,002,99155E-10,006,02902E-20,00
2.4 SBWOdeSolver9,46731E-10,003,50440E10,008,49560E10,002,99181E-10,006,03429E-20,00
2.4 copasi9,46733E-10,003,50440E10,008,49560E10,002,99181E-10,006,03429E-20,00
2.4 edu.kgi.roadRunner9,46732E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.4 jsim9,46732E-10,003,50440E10,008,49560E10,002,99181E-10,006,03428E-20,00
2.6 BioUML9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.6 ByoDyn9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.6 Jarnac9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.6 MathSBML9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.6 Oscill8 Core - - - - 8,48295E10,002,98803E-10,006,30767E-20,00
2.6 SBToolbox29,77787E-10,003,51694E10,008,48306E10,002,98775E-10,006,30062E-20,11
2.6 SBWOdeSolver9,78048E-10,003,51705E10,008,48295E10,002,98803E-10,006,30767E-20,00
2.6 copasi9,78050E-10,003,51705E10,008,48295E10,002,98804E-10,006,30766E-20,00
2.6 edu.kgi.roadRunner9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.6 jsim9,78049E-10,003,51705E10,008,48295E10,002,98803E-10,006,30765E-20,00
2.8 BioUML1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
2.8 ByoDyn1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
2.8 Jarnac1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
2.8 MathSBML1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
2.8 Oscill8 Core - - - - 8,47056E10,002,98397E-10,006,66267E-20,00
2.8 SBToolbox21,00828E00,003,52933E10,008,47067E10,002,98376E-10,006,65244E-20,15
2.8 SBWOdeSolver1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66265E-20,00
2.8 copasi1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66266E-20,00
2.8 edu.kgi.roadRunner1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
2.8 jsim1,00854E00,003,52944E10,008,47056E10,002,98397E-10,006,66264E-20,00
3.0 BioUML1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.0 ByoDyn1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.0 Jarnac1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.0 MathSBML1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.0 Oscill8 Core - - - - 8,45851E10,002,97949E-10,007,15973E-20,00
3.0 SBToolbox21,03768E00,003,54142E10,008,45858E10,002,97926E-10,007,14427E-20,21
3.0 SBWOdeSolver1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15970E-20,00
3.0 copasi1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15968E-20,00
3.0 edu.kgi.roadRunner1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.0 jsim1,03788E00,003,54149E10,008,45851E10,002,97949E-10,007,15966E-20,00
3.2 BioUML1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.2 ByoDyn1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.2 Jarnac1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.2 MathSBML1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.2 Oscill8 Core - - - - 8,44694E10,002,97435E-10,007,96595E-20,00
3.2 SBToolbox21,06518E00,003,55294E10,008,44706E10,002,97410E-10,007,93594E-20,37
3.2 SBWOdeSolver1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96588E-20,00
3.2 copasi1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96580E-20,00
3.2 edu.kgi.roadRunner1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.2 jsim1,06530E00,003,55306E10,008,44694E10,002,97435E-10,007,96573E-20,00
3.4 BioUML1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79222E-20,00
3.4 ByoDyn1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79222E-20,00
3.4 Jarnac1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79222E-20,00
3.4 MathSBML1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79224E-20,00
3.4 Oscill8 Core - - - - 8,43626E10,002,96776E-10,009,79361E-20,00
3.4 SBToolbox21,08809E00,003,56363E10,008,43637E10,002,96764E-10,009,70654E-20,87
3.4 SBWOdeSolver1,08808E00,003,56374E10,008,43626E10,002,96776E-10,009,79326E-20,00
3.4 copasi1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79244E-20,00
3.4 edu.kgi.roadRunner1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79222E-20,00
3.4 jsim1,08809E00,003,56374E10,008,43626E10,002,96776E-10,009,79222E-20,00
3.6 BioUML1,06828E00,003,57076E10,008,42924E10,002,95252E-10,002,53498E-10,00
3.6 ByoDyn1,06828E00,003,57076E10,008,42924E10,002,95252E-10,002,53498E-10,00
3.6 Jarnac1,06828E00,003,57076E10,008,42924E10,002,95252E-10,002,53498E-10,00
3.6 MathSBML1,06827E00,003,57076E10,008,42924E10,002,95252E-10,002,53503E-10,00
3.6 Oscill8 Core - - - - 8,42925E10,002,95256E-10,002,54781E-10,00
3.6 SBToolbox21,07229E00,383,57080E10,008,42920E10,002,95281E-10,002,38119E-16,1
3.6 SBWOdeSolver1,06794E00,003,57075E10,008,42925E10,002,95256E-10,002,54695E-10,00
3.6 copasi1,06826E00,003,57076E10,008,42924E10,002,95252E-10,002,53552E-10,00
3.6 edu.kgi.roadRunner1,06828E00,003,57076E10,008,42924E10,002,95252E-10,002,53498E-10,00
3.6 jsim1,06828E00,003,57076E10,008,42924E10,002,95252E-10,002,53498E-10,00
3.8 BioUML7,92585E-10,003,55534E10,008,44466E10,004,85817E-10,004,39770E-10,00
3.8 ByoDyn7,92585E-10,003,55534E10,008,44466E10,004,85817E-10,004,39770E-10,00
3.8 Jarnac7,92585E-10,003,55534E10,008,44466E10,004,85817E-10,004,39770E-10,00
3.8 MathSBML7,92584E-10,003,55534E10,008,44466E10,004,85817E-10,004,39769E-10,00
3.8 Oscill8 Core - - - - 8,44466E10,004,85766E-10,004,39786E-10,00
3.8 SBToolbox27,95409E-10,353,55577E10,008,44423E10,004,83497E-10,474,41867E-10,47
3.8 SBWOdeSolver7,92651E-10,003,55534E10,008,44466E10,004,85756E-10,004,39796E-10,00
3.8