Test: BIOMD0000000041.xml - Ok

test: BIOMD0000000041.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000041.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Cri  ADP  ADPi  P  ATPi  Cr  PCri  ATP  PCr  Pi 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation Cri ADP ADPi P ATPi Cr PCri ATP PCr Pi
var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 Oscill8 Core0,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,60000E40,000,00000E00,009,70000E30,000,00000E00,003,20000E40,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,95000E425,00,00000E00,007,27500E325,00,00000E00,002,00000E393,8
0.2 BioUML1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 ByoDyn1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 Jarnac1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 MathSBML1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 Oscill8 Core2,17615E40,00 - - 6,55488E30,00 - - 2,12874E158,8 - - 3,08543E-10,233,20705E-358,22,10906E-20,004,10620E40,00
0.2 SBToolbox21,55587E50,005,03256E30,005,55262E40,006,17422E30,004,82277E20,001,30343E40,003,08467E00,007,15289E-20,001,44825E-10,007,38208E40,00
0.2 SBWOdeSolver1,55544E50,005,03547E30,005,58737E40,632,49758E276,01,00415E20,001,30378E40,001,57839E00,001,50553E-20,008,73624E-20,001,45300E596,8
0.2 copasi1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 edu.kgi.roadRunner1,55543E50,005,03537E30,005,54926E40,006,17467E30,004,82142E20,001,30377E40,003,08543E00,007,15092E-20,001,44931E-10,007,38161E40,00
0.2 jsim1,63212E425,02,34279E353,44,88048E325,51,04262E30,005,17207E10,003,17843E375,63,09241E-10,007,68119E-30,001,84087E-20,008,18033E380,1
0.4 BioUML1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 ByoDyn1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 Jarnac1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 MathSBML1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 Oscill8 Core2,37910E40,00 - - 8,29654E30,00 - - 2,59211E167,7 - - 3,05808E-131,53,86399E-367,71,30035E-226,24,16336E40,00
0.4 SBToolbox21,56000E50,004,85615E30,005,75854E40,006,17070E30,005,40382E20,001,30000E40,003,06753E00,008,01018E-20,001,39294E-10,007,38060E40,00
0.4 SBWOdeSolver1,55998E50,004,85708E30,005,80346E40,789,58281E098,78,03213E10,001,30001E40,007,48495E-10,001,19558E-20,003,86696E-20,001,48203E5101
0.4 copasi1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 edu.kgi.roadRunner1,55996E50,004,85701E30,005,75748E40,006,17069E30,005,40161E20,001,30000E40,003,06865E00,008,00702E-20,001,39372E-10,007,38058E40,00
0.4 jsim1,78430E425,01,03310E378,76,14756E325,97,26630E20,009,43198E10,001,65649E387,34,46709E-10,001,39616E-20,001,76216E-20,008,45357E379,7
0.6 BioUML1,55997E50,004,85019E30,005,76453E40,006,17035E30,005,51494E20,001,29999E40,003,14473E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 ByoDyn1,55997E50,004,85019E30,005,76453E40,006,17035E30,005,51494E20,001,29999E40,003,14473E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 Jarnac1,55997E50,004,85019E30,005,76453E40,006,17035E30,005,51494E20,001,29999E40,003,14473E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 MathSBML1,55997E50,004,85019E30,005,76453E40,006,17035E30,005,51494E20,001,29999E40,003,14473E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 Oscill8 Core2,39802E40,00 - - 8,75601E30,00 - - 3,01743E160,5 - - 3,06106E-140,84,48993E-360,41,32618E-246,54,16657E40,00
0.6 SBToolbox21,56000E50,004,85010E30,005,76469E40,006,17031E30,005,51656E20,001,30000E40,003,14483E00,008,17778E-20,001,42841E-10,007,37981E40,00
0.6 SBWOdeSolver1,55999E50,004,85026E30,005,81204E40,823,27973E099,57,63001E10,001,30000E40,005,16921E-10,001,13246E-20,002,48083E-20,001,48283E5101
0.6 copasi1,55997E50,004,85019E30,005,76452E40,006,17035E30,005,51493E20,001,29999E40,003,14474E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 edu.kgi.roadRunner1,55997E50,004,85019E30,005,76453E40,006,17035E30,005,51494E20,001,29999E40,003,14473E00,008,17546E-20,001,42849E-10,007,37985E40,00
0.6 jsim1,79848E425,06,85328E285,96,45626E326,37,09097E20,001,33387E20,001,51457E388,36,38975E-10,001,97465E-20,002,62081E-20,008,43183E379,8
0.8 BioUML1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53710E20,001,29999E40,003,18044E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 ByoDyn1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53710E20,001,29999E40,003,18044E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 Jarnac1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53710E20,001,29999E40,003,18044E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 MathSBML1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53710E20,001,29999E40,003,18044E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 Oscill8 Core2,39979E40,00 - - 8,87530E30,00 - - 3,40250E154,9 - - 3,14250E-131,05,05854E-354,81,37847E-234,64,16640E40,00
0.8 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,53826E20,001,30000E40,003,18151E00,008,21044E-20,001,44854E-10,007,37970E40,00
0.8 SBWOdeSolver1,56000E50,004,85000E30,005,81244E40,833,07066E099,67,54842E10,001,30000E40,004,55360E-10,001,11942E-20,002,10877E-20,001,48287E5101
0.8 copasi1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53709E20,001,29999E40,003,18045E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 edu.kgi.roadRunner1,55997E50,004,84993E30,005,76462E40,006,17028E30,005,53710E20,001,29999E40,003,18044E00,008,20873E-20,001,44800E-10,007,37970E40,00
0.8 jsim1,79978E425,05,92977E287,86,51326E326,67,06721E20,001,68742E20,001,50132E388,58,75760E-10,002,49902E-20,003,70381E-20,008,39860E379,8
1.0 BioUML1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54146E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 ByoDyn1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54146E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 Jarnac1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54146E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 MathSBML1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54146E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 Oscill8 Core2,39995E40,00 - - 8,90452E30,00 - - 3,75004E150,2 - - 3,28514E-125,25,57291E-350,11,44471E-228,24,16605E40,00
1.0 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54189E20,001,30000E40,003,19336E00,008,21599E-20,001,45538E-10,007,37970E40,00
1.0 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05494E099,67,53164E10,001,30000E40,004,39409E-10,001,11668E-20,002,01183E-20,001,48287E5101
1.0 copasi1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54145E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 edu.kgi.roadRunner1,55997E50,004,84992E30,005,76458E40,006,17027E30,005,54146E20,001,29999E40,003,19248E00,008,21536E-20,001,45493E-10,007,37967E40,00
1.0 jsim1,79987E425,05,68451E288,36,50588E326,97,05251E20,002,00639E20,001,50008E388,51,14285E00,002,97282E-20,004,92014E-20,008,36789E379,9
1.2 BioUML1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 ByoDyn1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 Jarnac1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 MathSBML1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 Oscill8 Core2,39996E40,00 - - 8,91007E30,00 - - 4,06349E146,0 - - 3,47015E-120,36,03764E-345,91,52577E-223,24,16573E40,00
1.2 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54240E20,001,30000E40,003,19649E00,008,21690E-20,001,45729E-10,007,37970E40,00
1.2 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05233E099,67,52814E10,001,30000E40,004,35346E-10,001,11610E-20,001,98704E-20,001,48287E5101
1.2 copasi1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 edu.kgi.roadRunner1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54232E20,001,29999E40,003,19605E00,008,21670E-20,001,45704E-10,007,37967E40,00
1.2 jsim1,79986E425,05,61935E288,46,48363E327,27,03957E20,002,29397E20,001,49995E388,51,42735E00,003,40056E-20,006,21626E-20,008,34012E380,0
1.4 BioUML1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19704E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 ByoDyn1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19704E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 Jarnac1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19704E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 MathSBML1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19704E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 Oscill8 Core2,39996E40,00 - - 8,90955E30,00 - - 4,34619E142,3 - - 3,68224E-115,26,45739E-342,11,61858E-218,34,16543E40,00
1.4 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54250E20,001,30000E40,003,19730E00,008,21700E-20,001,45780E-10,007,37970E40,00
1.4 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05179E099,67,52740E10,001,30000E40,004,34324E-10,001,11597E-20,001,98078E-20,001,48287E5101
1.4 copasi1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19703E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 edu.kgi.roadRunner1,55997E50,004,84992E30,005,76458E40,006,17026E30,005,54249E20,001,29999E40,003,19704E00,008,21697E-20,001,45763E-10,007,37967E40,00
1.4 jsim1,79983E425,05,60203E288,46,45944E327,57,02790E20,002,55321E20,001,49993E388,51,71894E00,003,78661E-20,007,54976E-20,008,31506E380,0
1.6 BioUML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21703E-20,001,45779E-10,007,37967E40,00
1.6 ByoDyn1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21703E-20,001,45779E-10,007,37967E40,00
1.6 Jarnac1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21703E-20,001,45779E-10,007,37967E40,00
1.6 MathSBML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21703E-20,001,45779E-10,007,37967E40,00
1.6 Oscill8 Core2,39996E40,00 - - 8,90761E30,00 - - 4,60119E138,9 - - 3,90966E-19,96,83648E-338,71,71883E-213,24,16516E40,00
1.6 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54250E20,001,30000E40,003,19740E00,008,21700E-20,001,45780E-10,007,37970E40,00
1.6 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05167E099,67,52724E10,001,30000E40,004,34068E-10,001,11594E-20,001,97922E-20,001,48287E5101
1.6 copasi1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21702E-20,001,45779E-10,007,37967E40,00
1.6 edu.kgi.roadRunner1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54253E20,001,29999E40,003,19730E00,008,21703E-20,001,45779E-10,007,37967E40,00
1.6 jsim1,79980E425,05,59740E288,56,43653E327,77,01736E20,002,78693E20,001,49991E388,52,00992E00,004,13502E-20,008,88622E-20,008,29243E380,1
1.8 BioUML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45784E-10,007,37967E40,00
1.8 ByoDyn1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45784E-10,007,37967E40,00
1.8 Jarnac1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45784E-10,007,37967E40,00
1.8 MathSBML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45784E-10,007,37967E40,00
1.8 Oscill8 Core2,39996E40,00 - - 8,90547E30,00 - - 4,83124E135,8 - - 4,14360E-14,57,17886E-335,71,82269E-27,94,16492E40,00
1.8 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54250E20,001,30000E40,003,19740E00,008,21700E-20,001,45790E-10,007,37970E40,00
1.8 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05164E099,67,52720E10,001,30000E40,004,34005E-10,001,11594E-20,001,97883E-20,001,48287E5101
1.8 copasi1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45783E-10,007,37967E40,00
1.8 edu.kgi.roadRunner1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19737E00,008,21704E-20,001,45784E-10,007,37967E40,00
1.8 jsim1,79977E425,05,59615E288,56,41557E328,07,00785E20,002,99768E20,001,49990E388,52,29473E00,004,44946E-20,001,01993E-10,008,27201E380,1
2.0 BioUML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19739E00,008,21704E-20,001,45785E-10,007,37967E40,00
2.0 ByoDyn1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19739E00,008,21704E-20,001,45785E-10,007,37967E40,00
2.0 Jarnac1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19739E00,008,21704E-20,001,45785E-10,007,37967E40,00
2.0 MathSBML1,55997E50,004,84992E30,005,76457E40,006,17026E30,005,54254E20,001,29999E40,003,19739E00,008,21704E-20,001,45785E-10,007,37967E40,00
2.0 Oscill8 Core2,39996E40,00 - - 8,90344E30,00 - - 5,03882E133,1 - - 4,37761E-10,007,48809E-332,91,92715E-22,64,16470E40,00
2.0 SBToolbox21,56000E50,004,84990E30,005,76460E40,006,17030E30,005,54250E20,001,30000E40,003,19740E00,008,21700E-20,001,45790E-10,007,37970E40,00
2.0 SBWOdeSolver1,56000E50,004,84999E30,005,81247E40,833,05164E099,67,52720E10,001,30000E40,004,33990E-10,861,11594E-20,001,97874E-20,001,48287E5101
2.0