Test: BIOMD0000000044.xml - Ok

test: BIOMD0000000044.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000044.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6622948601.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Agonist_stimulated_production_of_IP3  A  EC  Ca_dependant_IP3_degradation  Ca_independant_IP3_degradation  Y  Z 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation Agonist_stimulated_production_of_IP3 A EC Ca_dependant_IP3_degradation Ca_independant_IP3_degradation Y Z
var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 ByoDyn0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 Jarnac0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 MathSBML0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 Oscill8 Core0,00000E00,004,50000E-10,001,00000E30,000,00000E00,00 - - - - 0,00000E00,00
0.0 SBToolbox20,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 VCell0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 copasi0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.0 jsim0,00000E00,004,50000E-10,001,00000E30,000,00000E00,000,00000E00,003,60000E-10,000,00000E00,00
0.2 BioUML-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 ByoDyn-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 Jarnac-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 MathSBML-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 Oscill8 Core-2,50000E-10,006,84753E-10,009,99632E20,003,88020E-30,00 - - - - 7,69956E-20,00
0.2 SBToolbox2-2,50000E-10,006,84750E-10,009,99630E20,003,87785E-30,001,13674E-20,006,50971E-10,007,69964E-20,00
0.2 SBWOdeSolver-2,50000E-10,006,84753E-10,009,99632E20,003,88021E-30,001,13673E-20,006,50974E-10,007,69956E-20,00
0.2 VCell-2,50000E-10,006,68164E-12,49,99702E20,002,05826E-24301,12532E-21,08,36579E-128,51,19151E-154,7
0.2 copasi-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 edu.kgi.roadRunner-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.2 jsim-2,50000E-10,006,84753E-10,009,99632E20,003,88005E-30,001,13672E-20,006,50975E-10,007,69956E-20,00
0.4 BioUML-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 ByoDyn-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 Jarnac-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 MathSBML-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 Oscill8 Core-5,00000E-10,009,08318E-10,009,99294E20,001,43643E-20,00 - - - - 8,46649E-20,00
0.4 SBToolbox2-5,00000E-10,009,08335E-10,009,99291E20,001,43484E-20,112,73169E-20,009,81673E-10,008,46585E-20,00
0.4 SBWOdeSolver-5,00000E-10,009,08318E-10,009,99294E20,001,43643E-20,002,73180E-20,009,81669E-10,008,46649E-20,00
0.4 VCell-5,00000E-10,008,40900E-17,49,99458E20,008,26629E-24752,64369E-23,21,30610E033,01,37587E-162,5
0.4 copasi-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 edu.kgi.roadRunner-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.4 jsim-5,00000E-10,009,08318E-10,009,99294E20,001,43639E-20,002,73178E-20,009,81670E-10,008,46649E-20,00
0.6 BioUML-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 ByoDyn-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 Jarnac-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 MathSBML-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 Oscill8 Core-7,50000E-10,001,11837E00,009,98971E20,003,40188E-20,00 - - - - 9,26079E-20,00
0.6 SBToolbox2-7,50000E-10,001,11839E00,009,98971E20,003,39657E-20,154,76092E-20,001,29658E00,009,25946E-20,00
0.6 SBWOdeSolver-7,50000E-10,001,11837E00,009,98971E20,003,40188E-20,004,76103E-20,001,29652E00,009,26079E-20,00
0.6 VCell-7,50000E-10,009,30201E-116,89,99259E20,002,25445E-15634,43537E-26,81,67529E029,21,66902E-180,2
0.6 copasi-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 edu.kgi.roadRunner-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.6 jsim-7,50000E-10,001,11837E00,009,98971E20,003,40179E-20,004,76100E-20,001,29652E00,009,26078E-20,00
0.8 BioUML-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 ByoDyn-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 Jarnac-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 MathSBML-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 Oscill8 Core-1,00000E00,001,31123E00,009,98664E20,006,68271E-20,00 - - - - 1,01050E-10,00
0.8 SBToolbox2-1,00000E00,001,31136E00,009,98662E20,006,67037E-20,187,19355E-20,001,59455E00,001,01025E-10,00
0.8 SBWOdeSolver-1,00000E00,001,31123E00,009,98664E20,006,68271E-20,007,19387E-20,001,59452E00,001,01050E-10,00
0.8 VCell-1,00000E00,002,83144E-178,49,99338E20,001,10701E01,56E35,98435E-216,81,05393E033,96,29988E-1523
0.8 copasi-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 edu.kgi.roadRunner-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
0.8 jsim-1,00000E00,001,31124E00,009,98664E20,006,68254E-20,007,19384E-20,001,59452E00,001,01050E-10,00
1.0 BioUML-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 ByoDyn-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 Jarnac-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 MathSBML-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 Oscill8 Core-1,25000E00,001,48181E00,009,98376E20,001,18277E-10,00 - - - - 1,10309E-10,00
1.0 SBToolbox2-1,25004E00,001,48211E00,009,98372E20,001,18027E-10,219,99116E-20,001,87424E00,001,10271E-10,00
1.0 SBWOdeSolver-1,25000E00,001,48181E00,009,98376E20,001,18277E-10,009,99118E-20,001,87407E00,001,10309E-10,00
1.0 VCell-1,25000E00,002,51729E-183,09,99613E20,121,38434E01,07E36,39293E-236,09,47425E-149,41,87294E-169,8
1.0 copasi-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 edu.kgi.roadRunner-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.0 jsim-1,25000E00,001,48181E00,009,98376E20,001,18274E-10,009,99114E-20,001,87408E00,001,10309E-10,00
1.2 BioUML-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 ByoDyn-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 Jarnac-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 MathSBML-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 Oscill8 Core-1,50000E00,001,62217E00,009,98107E20,001,96815E-10,00 - - - - 1,20988E-10,00
1.2 SBToolbox2-1,50000E00,001,62257E00,009,98102E20,001,96388E-10,211,31006E-10,002,13261E00,001,20930E-10,00
1.2 SBWOdeSolver-1,50000E00,001,62217E00,009,98107E20,001,96814E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 VCell-1,50000E00,004,64095E-171,49,99403E20,131,41480E06197,11081E-245,71,41108E033,81,42035E-117,4
1.2 copasi-1,50000E00,001,62218E00,009,98107E20,001,96810E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 edu.kgi.roadRunner-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.2 jsim-1,50000E00,001,62218E00,009,98107E20,001,96809E-10,001,31011E-10,002,13242E00,001,20988E-10,00
1.4 BioUML-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 ByoDyn-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 Jarnac-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 MathSBML-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 Oscill8 Core-1,75000E00,001,71757E00,009,97862E20,003,17930E-10,00 - - - - 1,34689E-10,00
1.4 SBToolbox2-1,75004E00,001,71824E00,009,97861E20,003,17223E-10,221,64499E-10,002,36410E00,001,34587E-10,00
1.4 SBWOdeSolver-1,75000E00,001,71757E00,009,97862E20,003,17929E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 VCell-1,75000E00,006,12873E-164,39,99217E20,141,50505E03738,20736E-250,11,74688E026,11,78516E-132,5
1.4 copasi-1,75000E00,001,71758E00,009,97862E20,003,17920E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 edu.kgi.roadRunner-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.4 jsim-1,75000E00,001,71758E00,009,97862E20,003,17918E-10,001,64503E-10,002,36381E00,001,34688E-10,00
1.6 BioUML-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.6 ByoDyn-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.6 Jarnac-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.6 MathSBML-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.6 Oscill8 Core-2,00000E00,001,72501E00,009,97652E20,005,25834E-10,00 - - - - 1,59923E-10,00
1.6 SBToolbox2-2,00000E00,001,72662E00,009,97652E20,005,24199E-10,301,99173E-10,002,54890E00,001,59526E-10,00
1.6 SBWOdeSolver-2,00000E00,001,72502E00,009,97652E20,005,25818E-10,001,99159E-10,002,54808E00,001,59917E-10,00
1.6 VCell-2,00000E00,001,87877E-189,19,99450E20,182,17079E03139,13352E-254,19,39843E-163,15,19263E-1225
1.6 copasi-2,00000E00,001,72506E00,009,97652E20,005,25785E-10,001,99159E-10,002,54810E00,001,59908E-10,00
1.6 edu.kgi.roadRunner-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.6 jsim-2,00000E00,001,72506E00,009,97652E20,005,25779E-10,001,99159E-10,002,54810E00,001,59907E-10,00
1.8 BioUML-2,25000E00,002,67795E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20108E-10,00
1.8 ByoDyn-2,25000E00,002,67795E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20108E-10,00
1.8 Jarnac-2,25000E00,002,67795E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20108E-10,00
1.8 MathSBML-2,25000E00,002,67793E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20109E-10,00
1.8 Oscill8 Core-2,25000E00,002,68736E-10,009,97877E20,002,20610E00,00 - - - - 9,18345E-10,00
1.8 SBToolbox2-2,25003E00,002,75507E-10,009,97867E20,002,19905E00,312,25418E-10,111,58245E01,19,13632E-10,00
1.8 SBWOdeSolver-2,25000E00,002,68851E-10,009,97877E20,002,20598E00,002,25164E-10,001,56482E00,009,18263E-10,00
1.8 VCell-2,25000E00,002,91970E-16,09,99538E20,172,31241E04,89,56182E-257,51,11549E028,61,69292E-181,5
1.8 copasi-2,25000E00,002,67767E-10,009,97877E20,002,20707E00,002,25161E-10,001,56287E00,009,20127E-10,00
1.8 edu.kgi.roadRunner-2,25000E00,002,67795E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20108E-10,00
1.8 jsim-2,25000E00,002,67795E-10,009,97877E20,002,20704E00,002,25163E-10,001,56294E00,009,20108E-10,00
2.0 BioUML-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.0 ByoDyn-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.0 Jarnac-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.0 MathSBML-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.0 Oscill8 Core-2,50000E00,001,73839E-10,009,98612E20,002,54766E00,00 - - - - 3,11708E-10,00
2.0 SBToolbox2-2,50000E00,001,72588E-10,709,98608E20,002,54860E00,002,28776E-10,121,43716E00,003,13566E-10,58
2.0 SBWOdeSolver-2,50000E00,001,73822E-10,009,98612E20,002,54767E00,002,28509E-10,001,43630E00,003,11749E-10,00
2.0 VCell-2,50000E00,004,94381E-11849,99334E20,002,35209E07,71,03533E-154,71,54190E07,31,50837E-151,6
2.0 copasi-2,50000E00,001,73816E-10,009,98612E20,002,54768E00,002,28503E-10,001,43637E00,003,11526E-10,00
2.0 edu.kgi.roadRunner-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.0 jsim-2,50000E00,001,73812E-10,009,98612E20,002,54768E00,002,28504E-10,001,43637E00,003,11536E-10,00
2.2 BioUML-2,75000E00,002,03608E-10,009,98744E20,002,76346E00,002,32930E-10,001,14226E00,004,73538E-10,00
2.2 ByoDyn-2,75000E00,002,03608E-10,009,98744E20,002,76346E00,002,32930E-10,001,14226E00,004,73538E-10,00
2.2 Jarnac-2,75000E00,002,03608E-10,009,98744E20,002,76346E00,002,32930E-10,001,14226E00,004,73538E-10,00