Test: BIOMD0000000048.xml - Ok

test: BIOMD0000000048.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000048.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6624193277.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: ShP  ShGS  RG  PLCgl  PLCg  ShG  RPLCg  RP  RPLCgP  RSh  GS  RShG  R2  R  SOS  RShGS  Shc  RShP  EGF  PLCgP  Grb  RGS  Ra 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation ShP ShGS RG PLCgl PLCg ShG RPLCg RP RPLCgP RSh GS RShG R2 R SOS RShGS Shc RShP EGF PLCgP Grb RGS Ra
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 Oscill8 Core0,00000E00,000,00000E00,00 - - - - 1,05000E20,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,00 - - 1,50000E20,000,00000E00,00 - - 0,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,00-1,20820E-141000,00000E00,000,00000E00,000,00000E00,00-4,02734E-150,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,05000E20,008,61646E-150,000,00000E00,000,00000E00,000,00000E00,004,30823E-150,000,00000E00,000,00000E00,000,00000E00,001,00000E20,003,40000E10,000,00000E00,001,50000E20,000,00000E00,006,80000E20,000,00000E00,008,50000E10,000,00000E00,000,00000E00,00
0.0 jsim0,00000E00,000,00000E00,000,00000E00,000,00000E00,003,15000E-10100,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,003,00000E-10100,01,02000E-10100,00,00000E00,004,50000E-10100,00,00000E00,002,04000E-9100,00,00000E00,002,55000E-10100,00,00000E00,000,00000E00,00
0.2 BioUML1,92564E-50,007,56540E-90,001,99451E-40,004,62209E-80,001,04995E20,002,63390E-70,004,78307E-30,001,64018E-20,001,81983E-40,008,50068E-30,005,77224E-20,001,61447E-50,007,13879E-10,006,73821E10,003,39423E10,001,80328E-70,001,49989E20,001,98305E-30,006,47382E20,001,69310E-60,008,49421E10,002,75113E-60,003,11261E10,00
0.2 ByoDyn1,92564E-50,007,56537E-90,001,99451E-40,004,62209E-80,001,04995E20,002,63390E-70,004,78307E-30,001,64018E-20,001,81983E-40,008,50068E-30,005,77224E-20,001,61447E-50,007,13879E-10,006,73821E10,003,39423E10,001,80328E-70,001,49989E20,001,98305E-30,006,47382E20,001,69310E-60,008,49421E10,002,75113E-60,003,11261E10,00
0.2 Jarnac1,92573E-50,007,56626E-90,001,99452E-40,004,62263E-80,001,04995E20,002,63418E-70,004,78310E-30,001,64018E-20,001,81987E-40,008,50071E-30,005,77224E-20,001,61454E-50,007,13880E-10,006,73821E10,003,39423E10,001,80347E-70,001,49989E20,001,98308E-30,006,47382E20,001,69319E-60,008,49421E10,002,75119E-60,003,11260E10,00
0.2 MathSBML1,92561E-50,007,56573E-90,001,99451E-40,004,62208E-80,001,04995E20,002,63388E-70,004,78307E-30,001,64018E-20,001,81982E-40,008,50069E-30,005,77224E-20,001,61444E-50,007,13879E-10,006,73821E10,003,39423E10,001,80326E-70,001,49989E20,001,98304E-30,006,47382E20,001,69308E-60,008,49421E10,002,75112E-60,003,11261E10,00
0.2 Oscill8 Core2,60056E-270,002,51616E-260,00 - - - - 1,05000E20,00 - - -1,06138E-380,00-8,39089E-270,00-1,60400E-510,00 - - 1,73400E-130,00-2,43276E-280,003,22859E-350,001,00000E248,43,40000E10,17 - - 1,50000E20,00-7,98494E-260,00 - - -1,42444E-540,008,50000E10,006,18422E-270,001,22400E-100,00
0.2 SBToolbox21,94228E-50,787,76853E-92,51,99646E-40,004,70543E-81,71,05000E20,002,67744E-71,54,78731E-30,001,63952E-20,001,82732E-40,368,50410E-30,005,77224E-20,001,62829E-50,787,13589E-10,006,73821E10,003,39421E10,001,83047E-71,41,49990E20,001,98962E-30,006,47386E20,001,70929E-60,878,49421E10,002,76218E-60,353,11266E10,00
0.2 SBWOdeSolver1,92718E-50,007,57744E-90,001,99512E-40,004,62770E-80,001,04995E20,002,63695E-70,004,78449E-30,001,64039E-20,001,82081E-40,008,50288E-30,005,77224E-20,001,61575E-50,007,13938E-10,006,73823E10,003,39423E10,001,80537E-70,001,49989E20,001,98403E-30,006,47382E20,001,69452E-60,008,49421E10,002,75264E-60,003,11256E10,00
0.2 VCell1,92615E-50,007,57097E-90,001,99462E-40,004,62443E-80,001,04995E20,002,63514E-70,004,78332E-30,001,64020E-20,001,82009E-40,008,50102E-30,005,77224E-20,001,61489E-50,007,13884E-10,006,73820E10,003,39423E10,001,80407E-70,001,49989E20,001,98329E-30,006,47382E20,001,69359E-60,008,49421E10,002,75152E-60,003,11261E10,00
0.2 copasi1,92564E-50,007,56549E-90,001,99451E-40,004,62210E-80,001,04995E20,002,63391E-70,004,78307E-30,001,64018E-20,001,81983E-40,008,50068E-30,005,77224E-20,001,61447E-50,007,13879E-10,006,73821E10,003,39423E10,001,80328E-70,001,49989E20,001,98305E-30,006,47382E20,001,69310E-60,008,49421E10,002,75113E-60,003,11261E10,00
0.2 edu.kgi.roadRunner1,92564E-50,007,56533E-90,001,99451E-40,004,62205E-80,001,04995E20,002,63390E-70,004,78307E-30,001,64018E-20,001,81983E-40,008,50068E-30,005,77224E-20,001,61447E-50,007,13879E-10,006,73821E10,003,39423E10,001,80328E-70,001,49989E20,001,98305E-30,006,47382E20,001,69310E-60,008,49421E10,002,75113E-60,003,11261E10,00
0.2 jsim2,72980E-1430,007,50210E-1930,003,34204E-1191001,59239E-1571003,15000E-10100,03,13245E-1681008,25681E-1180,003,64057E-940,008,25681E-1310,001,76932E-1171001,56060E-361006,96100E-1550,002,42705E-810,003,00000E-10100,01,02000E-10100,06,44345E-1801004,50000E-10100,01,06159E-1290,002,04000E-9100,02,12318E-1440,002,55000E-10100,03,66455E-1440,001,10160E-33100
0.4 BioUML1,10288E-30,001,92495E-60,002,87399E-30,006,34900E-60,001,04928E20,003,15398E-50,006,65662E-20,001,04429E-10,005,56569E-30,009,82221E-20,001,15282E-10,009,10356E-40,003,54762E00,004,64021E10,003,38846E10,002,17105E-50,001,49848E20,005,15569E-20,006,26402E20,001,08906E-40,008,48808E10,008,66693E-50,004,58422E10,00
0.4 ByoDyn1,10288E-30,001,92495E-60,002,87399E-30,006,34900E-60,001,04928E20,003,15398E-50,006,65662E-20,001,04429E-10,005,56569E-30,009,82221E-20,001,15282E-10,009,10356E-40,003,54762E00,004,64021E10,003,38846E10,002,17105E-50,001,49848E20,005,15569E-20,006,26402E20,001,08906E-40,008,48808E10,008,66693E-50,004,58422E10,00
0.4 Jarnac1,10293E-30,001,92523E-60,002,87402E-30,006,34965E-60,001,04928E20,003,15426E-50,006,65670E-20,001,04429E-10,005,56587E-30,009,82228E-20,001,15282E-10,009,10401E-40,003,54762E00,004,64021E10,003,38846E10,002,17123E-50,001,49848E20,005,15582E-20,006,26402E20,001,08913E-40,008,48808E10,008,66721E-50,004,58422E10,00
0.4 MathSBML1,10288E-30,001,92495E-60,002,87399E-30,006,34900E-60,001,04928E20,003,15398E-50,006,65662E-20,001,04429E-10,005,56569E-30,009,82221E-20,001,15282E-10,009,10356E-40,003,54762E00,004,64021E10,003,38846E10,002,17105E-50,001,49848E20,005,15569E-20,006,26402E20,001,08906E-40,008,48808E10,008,66693E-50,004,58422E10,00
0.4 Oscill8 Core1,04925E-260,001,02059E-250,00 - - - - 1,05000E20,00 - - -9,64652E-380,00-3,87729E-260,00-2,92220E-500,00 - - 3,46800E-130,00-8,85316E-280,002,48744E-340,001,00000E21163,40000E10,34 - - 1,50000E20,00-3,73841E-250,00 - - -6,58210E-540,008,50000E10,142,31072E-260,002,44800E-100,00
0.4 SBToolbox21,10700E-30,341,95255E-61,42,87447E-30,006,41095E-60,931,04930E20,003,17953E-50,776,65706E-20,001,04390E-10,005,57502E-30,159,81947E-20,001,15285E-10,009,13668E-40,343,54663E00,004,64011E10,003,38841E10,002,18714E-50,701,49850E20,005,16055E-20,006,26404E20,001,09415E-40,438,48811E10,008,68224E-50,164,58453E10,00
0.4 SBWOdeSolver1,10320E-30,001,92616E-60,002,87427E-30,006,35209E-60,001,04928E20,003,15537E-50,006,65723E-20,001,04431E-10,005,56677E-30,009,82284E-20,001,15282E-10,009,10616E-40,003,54767E00,004,64024E10,003,38846E10,002,17201E-50,001,49848E20,005,15651E-20,006,26402E20,001,08942E-40,008,48808E10,008,66868E-50,004,58418E10,00
0.4 VCell1,10291E-30,001,92511E-60,002,87401E-30,006,34937E-60,001,04928E20,003,15414E-50,006,65666E-20,001,04429E-10,005,56578E-30,009,82225E-20,001,15282E-10,009,10380E-40,003,54762E00,004,64021E10,003,38846E10,002,17115E-50,001,49848E20,005,15576E-20,006,26402E20,001,08910E-40,008,48808E10,008,66707E-50,004,58422E10,00
0.4 copasi1,10288E-30,001,92495E-60,002,87399E-30,006,34900E-60,001,04928E20,003,15398E-50,006,65662E-20,001,04429E-10,005,56569E-30,009,82221E-20,001,15282E-10,009,10356E-40,003,54762E00,004,64021E10,003,38846E10,002,17104E-50,001,49848E20,005,15569E-20,006,26402E20,001,08906E-40,008,48808E10,008,66693E-50,004,58422E10,00
0.4 edu.kgi.roadRunner1,10288E-30,001,92495E-60,002,87399E-30,006,34900E-60,001,04928E20,003,15398E-50,006,65662E-20,001,04429E-10,005,56569E-30,009,82221E-20,001,15282E-10,009,10356E-40,003,54762E00,004,64021E10,003,38846E10,002,17105E-50,001,49848E20,005,15569E-20,006,26402E20,001,08906E-40,008,48808E10,008,66693E-50,004,58422E10,00
0.4 jsim3,49415E-1410,003,84107E-1900,001,06945E-1171004,07650E-1551003,15000E-10100,08,01907E-1661002,64218E-1160,005,82491E-930,005,28436E-1290,005,66181E-1161003,12120E-361008,91007E-1530,001,94164E-800,003,00000E-10100,01,02000E-10100,01,64952E-1771004,50000E-10100,06,79417E-1280,002,04000E-9100,02,71767E-1420,002,55000E-10100,02,34531E-1420,002,20320E-33100
0.6 BioUML9,31324E-30,003,98321E-50,001,10898E-20,009,46914E-50,001,04718E20,004,12440E-40,002,47032E-10,002,41986E-10,003,35785E-20,003,05420E-10,001,72628E-10,007,55617E-30,007,40990E00,003,24972E10,003,38265E10,002,86466E-40,001,49410E20,002,66619E-10,006,12497E20,001,02307E-30,008,48074E10,005,41190E-40,005,04548E10,00
0.6 ByoDyn9,31324E-30,003,98321E-50,001,10898E-20,009,46914E-50,001,04718E20,004,12440E-40,002,47032E-10,002,41986E-10,003,35785E-20,003,05420E-10,001,72628E-10,007,55617E-30,007,40990E00,003,24972E10,003,38265E10,002,86466E-40,001,49410E20,002,66619E-10,006,12497E20,001,02307E-30,008,48074E10,005,41190E-40,005,04548E10,00
0.6 Jarnac9,31392E-30,003,98405E-50,001,10900E-20,009,47063E-50,001,04718E20,004,12493E-40,002,47035E-10,002,41985E-10,003,35800E-20,003,05421E-10,001,72628E-10,007,55670E-30,007,40989E00,003,24973E10,003,38265E10,002,86503E-40,001,49410E20,002,66627E-10,006,12497E20,001,02316E-30,008,48074E10,005,41217E-40,005,04547E10,00
0.6 MathSBML9,31324E-30,003,98319E-50,001,10898E-20,009,46911E-50,001,04718E20,004,12439E-40,002,47032E-10,002,41986E-10,003,35785E-20,003,05420E-10,001,72628E-10,007,55617E-30,007,40990E00,003,24972E10,003,38265E10,002,86466E-40,001,49410E20,002,66619E-10,006,12497E20,001,02307E-30,008,48074E10,005,41190E-40,005,04548E10,00
0.6 Oscill8 Core2,35481E-260,002,29405E-250,00 - - - - 1,05000E20,27 - - -3,38482E-370,00-9,00762E-260,00-1,53592E-490,00 - - 5,20200E-130,00-1,92326E-270,008,29038E-340,001,00000E22083,40000E10,51 - - 1,50000E20,39-8,72496E-250,00 - - -1,52914E-530,008,50000E10,235,14931E-260,003,67200E-100,00
0.6 SBToolbox29,33189E-30,194,02228E-50,951,10891E-20,009,53298E-50,651,04721E20,004,14504E-40,482,46984E-10,002,41932E-10,003,36047E-20,003,05312E-10,001,72629E-10,007,57015E-30,177,40860E00,003,24953E10,003,38262E10,002,87791E-40,441,49412E20,002,66656E-10,006,12494E20,001,02601E-30,278,48072E10,005,41704E-40,005,04593E10,00
0.6 SBWOdeSolver9,31461E-30,003,98461E-50,001,10903E-20,009,47173E-50,001,04718E20,004,12537E-40,002,47041E-10,002,41985E-10,003,35818E-20,003,05424E-10,001,72628E-10,007,55724E-30,007,40988E00,003,24975E10,003,38265E10,002,86534E-40,001,49410E20,002,66637E-10,006,12497E20,001,02325E-30,008,48074E10,005,41246E-40,005,04545E10,00
0.6 VCell9,31331E-30,003,98331E-50,001,10898E-20,009,46930E-50,001,04718E20,004,12446E-40,002,47032E-10,002,41986E-10,003,35787E-20,003,05420E-10,001,72628E-10,007,55622E-30,007,40991E00,003,24972E10,003,38265E10,002,86470E-40,001,49410E20,002,66620E-10,006,12497E20,001,02308E-30,008,48074E10,005,41193E-40,005,04548E10,00
0.6 copasi9,31324E-30,003,98322E-50,001,10898E-20,009,46914E-50,001,04718E20,004,12440E-40,002,47032E-10,002,41986E-10,003,35785E-20,003,05420E-10,001,72628E-10,007,55616E-30,007,40990E00,003,24972E10,003,38265E10,002,86466E-40,001,49410E20,002,66619E-10,006,12497E20,001,02307E-30,008,48074E10,005,41190E-40,005,04548E10,00
0.6 edu.kgi.roadRunner9,31324E-30,003,98321E-50,001,10898E-20,009,46914E-50,001,04718E20,004,12440E-40,002,47032E-10,002,41986E-10,003,35785E-20,003,05420E-10,001,72628E-10,007,55617E-30,007,40990E00,003,24972E10,003,38265E10,002,86466E-40,001,49410E20,002,66619E-10,006,12497E20,001,02307E-30,008,48074E10,005,41190E-40,005,04548E10,00
0.6 jsim5,97008E-1400,001,47664E-1880,008,12116E-1171001,04476E-1531003,15000E-10100,02,05520E-1641002,00640E-1150,002,94886E-920,006,01921E-1280,004,29944E-1151004,68180E-361001,52237E-1510,006,55302E-800,003,00000E-10100,01,02000E-10100,04,22754E-1761004,50000E-10100,07,73899E-1270,002,04000E-9100,04,64339E-1410,002,55000E-10100,02,67146E-1410,003,30480E-33100
0.8 BioUML3,69101E-20,003,01643E-40,002,56883E-20,005,80373E-40,001,04340E20,002,23040E-30,005,48332E-10,003,84256E-10,001,06763E-10,005,75251E-10,002,29624E-10,002,93885E-20,001,10354E10,002,30789E10,003,37667E10,001,56703E-30,001,48620E20,007,33860E-10,006,03079E20,004,46532E-30,008,47094E10,001,78758E-30,005,00366E10,00
0.8 ByoDyn3,69101E-20,003,01643E-40,002,56883E-20,005,80373E-40,001,04340E20,002,23040E-30,005,48332E-10,003,84256E-10,001,06763E-10,005,75251E-10,002,29624E-10,002,93885E-20,001,10354E10,002,30789E10,003,37667E10,001,56703E-30,001,48620E20,007,33860E-10,006,03079E20,004,46532E-30,008,47094E10,001,78758E-30,005,00366E10,00
0.8 Jarnac3,69134E-20,003,01725E-40,002,56887E-20,005,80495E-40,001,04340E20,002,23076E-30,005,48338E-10,003,84254E-10,001,06769E-10,005,75249E-10,002,29624E-10,002,93909E-20,001,10353E10,002,30792E10,003,37667E10,001,56729E-30,001,48620E20,007,33881E-10,006,03079E20,004,46582E-30,008,47094E10,001,78769E-30,005,00364E10,00
0.8 MathSBML3,69101E-20,003,01642E-40,002,56883E-20,005,80373E-40,001,04340E20,002,23040E-30,005,48332E-10,003,84256E-10,001,06763E-10,005,75251E-10,002,29624E-10,002,93885E-20,001,10354E10,002,30789E10,003,37667E10,001,56703E-30,001,48620E20,007,33860E-10,006,03079E20,004,46532E-3