Test: BIOMD0000000050.xml - Ok

test: BIOMD0000000050.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000050.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Man  FA  Fru  _1DG  DFG  Mel  MG  Glu  AA  Cn  E2  Gly  E1  _3DG 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation Man FA Fru _1DG DFG Mel MG Glu AA Cn E2 Gly E1 _3DG
var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,009,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.2 ByoDyn7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.2 Jarnac7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.2 MathSBML7,11041E-50,004,43523E-50,003,69764E-50,005,18106E-40,008,93400E00,001,79462E-70,004,42065E-50,001,13740E-40,001,12481E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92467E-50,00
0.2 Oscill8 Core7,11060E-50,004,43538E-50,003,69774E-50,005,18091E-40,008,93400E00,001,79563E-70,00 - - 1,13743E-40,001,12513E-40,002,77537E-20,00 - - 2,86855E-20,009,95761E-30,007,92484E-50,00
0.2 SBWOdeSolver7,11062E-50,004,43536E-50,003,69775E-50,005,18110E-40,008,93400E00,001,79497E-70,004,42079E-50,001,13743E-40,001,12495E-40,002,77537E-20,002,73535E-20,002,86855E-20,009,95761E-30,007,92489E-50,00
0.2 VCell7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.2 copasi7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.2 edu.kgi.roadRunner7,11028E-50,004,43515E-50,003,69758E-50,005,18091E-40,008,93400E00,001,79470E-70,004,42057E-50,001,13738E-40,001,12484E-40,002,77537E-20,002,73536E-20,002,86855E-20,009,95762E-30,007,92452E-50,00
0.4 BioUML2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45883E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.4 ByoDyn2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45883E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.4 Jarnac2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45884E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.4 MathSBML2,78822E-40,001,77349E-40,001,45357E-40,001,81151E-30,008,86849E00,001,45882E-60,001,76207E-40,004,45982E-40,006,69802E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08375E-40,00
0.4 Oscill8 Core2,78827E-40,001,77353E-40,001,45360E-40,001,81153E-30,008,86849E00,001,45901E-60,00 - - 4,45990E-40,006,69826E-40,005,52174E-20,00 - - 5,88785E-20,001,93316E-20,003,08380E-40,00
0.4 SBWOdeSolver2,78827E-40,001,77353E-40,001,45360E-40,001,81154E-30,008,86849E00,001,45894E-60,001,76210E-40,004,45990E-40,006,69814E-40,005,52174E-20,005,32982E-20,005,88785E-20,001,93316E-20,003,08380E-40,00
0.4 VCell2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45884E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.4 copasi2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45883E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.4 edu.kgi.roadRunner2,78821E-40,001,77348E-40,001,45357E-40,001,81152E-30,008,86849E00,001,45883E-60,001,76206E-40,004,45981E-40,006,69781E-40,005,52174E-20,005,32982E-20,005,88784E-20,001,93316E-20,003,08374E-40,00
0.6 BioUML6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.6 ByoDyn6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.6 Jarnac6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.6 MathSBML6,15099E-40,003,98863E-40,003,21453E-40,003,58572E-30,008,80346E00,004,99764E-60,003,95086E-40,009,83805E-40,001,90704E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75063E-40,00
0.6 Oscill8 Core6,15106E-40,003,98869E-40,003,21457E-40,003,58571E-30,008,80346E00,004,99796E-60,00 - - 9,83816E-40,001,90711E-30,008,23951E-20,00 - - 9,04872E-20,002,81524E-20,006,75070E-40,00
0.6 SBWOdeSolver6,15106E-40,003,98868E-40,003,21457E-40,003,58572E-30,008,80346E00,004,99789E-60,003,95091E-40,009,83816E-40,001,90711E-30,008,23951E-20,007,78976E-20,009,04872E-20,002,81524E-20,006,75070E-40,00
0.6 VCell6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.6 copasi6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.6 edu.kgi.roadRunner6,15098E-40,003,98862E-40,003,21453E-40,003,58570E-30,008,80346E00,004,99765E-60,003,95085E-40,009,83803E-40,001,90705E-30,008,23951E-20,007,78977E-20,009,04871E-20,002,81524E-20,006,75062E-40,00
0.8 BioUML1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 ByoDyn1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 Jarnac1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 MathSBML1,07230E-30,007,08712E-40,005,61742E-40,005,64173E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 Oscill8 Core1,07231E-30,007,08719E-40,005,61746E-40,005,64173E-30,008,73890E00,001,20137E-50,00 - - 1,71497E-30,003,96651E-30,001,09290E-10,00 - - 1,23424E-10,003,64489E-20,001,16774E-30,00
0.8 SBWOdeSolver1,07231E-30,007,08719E-40,005,61747E-40,005,64173E-30,008,73890E00,001,20136E-50,006,99948E-40,001,71497E-30,003,96651E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64489E-20,001,16774E-30,00
0.8 VCell1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 copasi1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
0.8 edu.kgi.roadRunner1,07230E-30,007,08711E-40,005,61741E-40,005,64172E-30,008,73890E00,001,20132E-50,006,99940E-40,001,71495E-30,003,96643E-30,001,09290E-10,001,01213E-10,001,23424E-10,003,64490E-20,001,16773E-30,00
1.0 BioUML1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 ByoDyn1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 Jarnac1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 MathSBML1,64319E-30,001,10666E-30,008,62859E-40,007,84588E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 Oscill8 Core1,64320E-30,001,10667E-30,008,62864E-40,007,84587E-30,008,67482E00,002,37736E-50,00 - - 2,62784E-30,006,92750E-30,001,35906E-10,00 - - 1,57606E-10,004,42486E-20,001,77553E-30,00
1.0 SBWOdeSolver1,64320E-30,001,10667E-30,008,62864E-40,007,84588E-30,008,67482E00,002,37735E-50,001,08989E-30,002,62784E-30,006,92749E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42486E-20,001,77553E-30,00
1.0 VCell1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 copasi1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.0 edu.kgi.roadRunner1,64318E-30,001,10666E-30,008,62858E-40,007,84587E-30,008,67482E00,002,37729E-50,001,08988E-30,002,62782E-30,006,92739E-30,001,35906E-10,001,23302E-10,001,57606E-10,004,42487E-20,001,77552E-30,00
1.2 BioUML2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.2 ByoDyn2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.2 Jarnac2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.2 MathSBML2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48822E-30,00
1.2 Oscill8 Core2,32091E-30,001,59245E-30,001,22160E-30,001,01089E-20,008,61121E00,004,15883E-50,00 - - 3,71143E-30,001,08275E-20,001,62246E-10,00 - - 1,92953E-10,005,15775E-20,002,48823E-30,00
1.2 SBWOdeSolver2,32091E-30,001,59244E-30,001,22160E-30,001,01089E-20,008,61121E00,004,15882E-50,001,56402E-30,003,71143E-30,001,08275E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48823E-30,00
1.2 VCell2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.2 copasi2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.2 edu.kgi.roadRunner2,32090E-30,001,59243E-30,001,22159E-30,001,01089E-20,008,61121E00,004,15872E-50,001,56401E-30,003,71141E-30,001,08274E-20,001,62246E-10,001,44220E-10,001,92953E-10,005,15775E-20,002,48821E-30,00
1.4 BioUML3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 ByoDyn3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 Jarnac3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 MathSBML3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95529E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 Oscill8 Core3,09896E-30,002,16571E-30,001,63489E-30,001,23717E-20,008,54806E00,006,68047E-50,00 - - 4,95531E-30,001,56761E-20,001,88312E-10,00 - - 2,29390E-10,005,84601E-20,003,29627E-30,00
1.4 SBWOdeSolver3,09896E-30,002,16571E-30,001,63489E-30,001,23717E-20,008,54806E00,006,68047E-50,002,12148E-30,004,95531E-30,001,56761E-20,001,88312E-10,001,64021E-10,002,29390E-10,005,84601E-20,003,29627E-30,00
1.4 VCell3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 copasi3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.4 edu.kgi.roadRunner3,09895E-30,002,16570E-30,001,63488E-30,001,23717E-20,008,54806E00,006,68033E-50,002,12147E-30,004,95528E-30,001,56760E-20,001,88313E-10,001,64021E-10,002,29390E-10,005,84602E-20,003,29625E-30,00
1.6 BioUML3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,004,19066E-30,00
1.6 ByoDyn3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,004,19066E-30,00
1.6 Jarnac3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,004,19066E-30,00
1.6 MathSBML3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,004,19066E-30,00
1.6 Oscill8 Core3,97118E-30,002,82611E-30,002,09980E-30,001,45960E-20,008,48538E00,001,00801E-40,00 - - 6,34960E-30,002,14646E-20,002,14108E-10,00 - - 2,66845E-10,006,49199E-20,004,19067E-30,00
1.6 SBWOdeSolver3,97118E-30,002,82611E-30,002,09980E-30,001,45960E-20,008,48538E00,001,00801E-40,002,76141E-30,006,34960E-30,002,14645E-20,002,14108E-10,001,82756E-10,002,66845E-10,006,49199E-20,004,19067E-30,00
1.6 VCell3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,004,19066E-30,00
1.6 copasi3,97116E-30,002,82610E-30,002,09979E-30,001,45960E-20,008,48538E00,001,00799E-40,002,76139E-30,006,34957E-30,002,14644E-20,002,14108E-10,001,82756E-10,002,66844E-10,006,49200E-20,00