Test: BIOMD0000000051.xml - Ok

test: BIOMD0000000051.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000051.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6624119661.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cadp  cnad  cribu5p  cnadph  cg1p  cpgp  camp  cxyl5p  catp  cpg  cglcex  cnadh  cnadp  cpg2  cpep  cpg3  crib5p  cpyr  cdhap  cg6p  ce4p  cfdp  cgap  cf6p  csed7p 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation cadp cnad cribu5p cnadph cg1p cpgp camp cxyl5p catp cpg cglcex cnadh cnadp cpg2 cpep cpg3 crib5p cpyr cdhap cg6p ce4p cfdp cgap cf6p csed7p
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML5,82000E-10,001,46440E00,001,11000E-10,006,20000E-20,006,53000E-10,008,00000E-30,009,54783E-10,001,38000E-10,004,27000E00,008,08000E-10,002,00000E00,009,34000E-20,001,96759E-10,003,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 ByoDyn5,82000E-10,001,46440E00,001,11000E-10,006,20000E-20,006,53000E-10,008,00000E-30,009,54783E-10,001,38000E-10,004,27000E00,008,08000E-10,002,00000E00,009,34000E-20,001,96759E-10,003,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 Jarnac - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 MathSBML - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 Oscill8 Core - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 SBToolbox25,82000E-10,001,46440E00,001,11000E-10,006,20000E-20,006,53000E-10,008,00000E-30,009,54780E-10,001,38000E-10,004,27000E00,008,08000E-10,002,00000E00,009,34000E-20,001,96760E-10,003,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 SBWOdeSolver - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 VCell - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 copasi - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.0 edu.kgi.roadRunner - - - - 1,11000E-10,00 - - 6,53000E-10,008,00000E-30,00 - - 1,38000E-10,00 - - 8,08000E-10,002,00000E00,00 - - - - 3,99000E-10,002,67000E00,002,13000E00,003,98000E-10,002,67000E00,001,67000E-10,003,48000E00,009,80000E-20,002,72000E-10,002,18000E-10,006,00000E-10,002,76000E-10,00
0.2 BioUML6,22290E-10,001,45832E00,001,12898E-10,006,23950E-20,006,54002E-10,005,43900E-30,006,85033E-10,001,46122E-10,003,38843E00,008,09973E-10,001,98927E00,009,35843E-20,001,95549E-10,003,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.2 ByoDyn6,22290E-10,001,45832E00,001,12898E-10,006,23950E-20,006,54002E-10,005,43900E-30,006,85033E-10,001,46122E-10,003,38843E00,008,09973E-10,001,98927E00,009,35843E-20,001,95549E-10,003,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.2 Jarnac - - - - 1,12898E-10,00 - - 6,54002E-10,005,43900E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.2 MathSBML - - - - 1,12898E-10,00 - - 6,54002E-10,005,43900E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.2 Oscill8 Core - - - - 1,10747E-11,9 - - 6,53042E-10,152,17507E-360,0 - - 1,36792E-16,4 - - 8,08217E-10,221,99761E00,42 - - - - 9,94169E-271,56,32545E-172,25,51080E-170,93,97100E-10,116,30429E088,71,85744E-17,63,50185E013,09,60327E-23,73,56144E-118,92,10444E-14,05,99737E-113,02,78414E-13,0
0.2 SBToolbox26,22291E-10,001,45831E00,001,12897E-10,006,23954E-20,006,53998E-10,005,43818E-30,006,85037E-10,001,46120E-10,003,38842E00,008,09977E-10,001,98931E00,009,35848E-20,001,95551E-10,003,48935E-10,002,27710E00,001,89360E00,003,97520E-10,003,34158E00,001,72578E-10,004,02399E00,009,97579E-20,002,99442E-10,002,19144E-10,006,89658E-10,002,87104E-10,00
0.2 SBWOdeSolver - - - - 1,12898E-10,00 - - 6,54002E-10,005,43904E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97583E-20,002,99461E-10,002,19152E-10,006,89651E-10,002,87105E-10,00
0.2 VCell - - - - 1,12898E-10,00 - - 6,54002E-10,005,43900E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.2 copasi - - - - 1,12898E-10,00 - - 6,54002E-10,005,43899E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99460E-10,002,19152E-10,006,89652E-10,002,87105E-10,00
0.2 edu.kgi.roadRunner - - - - 1,12898E-10,00 - - 6,54002E-10,005,43900E-30,00 - - 1,46122E-10,00 - - 8,09973E-10,001,98927E00,00 - - - - 3,48930E-10,002,27709E00,001,89360E00,003,97518E-10,003,34160E00,001,72587E-10,004,02398E00,009,97582E-20,002,99461E-10,002,19152E-10,006,89652E-10,002,87106E-10,00
0.4 BioUML6,60205E-10,001,45236E00,001,16851E-10,006,30768E-20,006,55964E-10,004,12108E-30,007,29629E-10,001,55819E-10,002,92147E00,008,13844E-10,001,98347E00,009,37662E-20,001,94357E-10,003,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 ByoDyn6,60205E-10,001,45236E00,001,16851E-10,006,30768E-20,006,55964E-10,004,12108E-30,007,29629E-10,001,55819E-10,002,92147E00,008,13844E-10,001,98347E00,009,37662E-20,001,94357E-10,003,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 Jarnac - - - - 1,16851E-10,00 - - 6,55964E-10,004,12108E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 MathSBML - - - - 1,16851E-10,00 - - 6,55964E-10,004,12108E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 Oscill8 Core - - - - 1,10187E-15,7 - - 6,52789E-10,481,73875E-357,8 - - 1,36078E-112,7 - - 8,08064E-10,711,99650E00,66 - - - - 7,83253E-275,85,07534E-176,14,29380E-175,43,96582E-10,956,29082E072,02,04618E-18,53,41721E019,29,63805E-26,74,18633E-116,32,14621E-16,75,85327E-119,22,77165E-18,2
0.4 SBToolbox26,60206E-10,001,45241E00,001,16852E-10,006,30765E-20,006,55966E-10,004,12041E-30,007,29633E-10,001,55822E-10,002,92152E00,008,13842E-10,001,98351E00,009,37666E-20,001,94352E-10,003,23209E-10,002,12334E00,001,74732E00,004,00399E-10,003,65711E00,001,88632E-10,004,22832E00,001,03261E-10,003,60063E-10,002,30092E-10,007,24314E-10,003,01985E-10,00
0.4 SBWOdeSolver - - - - 1,16851E-10,00 - - 6,55964E-10,004,12110E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60091E-10,002,30095E-10,007,24308E-10,003,01987E-10,00
0.4 VCell - - - - 1,16851E-10,00 - - 6,55964E-10,004,12108E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 copasi - - - - 1,16851E-10,00 - - 6,55964E-10,004,12108E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.4 edu.kgi.roadRunner - - - - 1,16851E-10,00 - - 6,55964E-10,004,12108E-30,00 - - 1,55819E-10,00 - - 8,13844E-10,001,98347E00,00 - - - - 3,23210E-10,002,12332E00,001,74731E00,004,00404E-10,003,65707E00,001,88635E-10,004,22828E00,001,03259E-10,003,60090E-10,002,30094E-10,007,24308E-10,003,01987E-10,00
0.6 BioUML6,95865E-10,001,44654E00,001,20998E-10,006,38651E-20,006,58260E-10,003,39965E-30,008,29255E-10,001,63618E-10,002,63543E00,008,18393E-10,001,97910E00,009,39508E-20,001,93180E-10,003,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 ByoDyn6,95865E-10,001,44654E00,001,20998E-10,006,38651E-20,006,58260E-10,003,39965E-30,008,29255E-10,001,63618E-10,002,63543E00,008,18393E-10,001,97910E00,009,39508E-20,001,93180E-10,003,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 Jarnac - - - - 1,20998E-10,00 - - 6,58260E-10,003,39965E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 MathSBML - - - - 1,20998E-10,00 - - 6,58260E-10,003,39965E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 Oscill8 Core - - - - 1,09957E-19,1 - - 6,52219E-10,921,64278E-351,7 - - 1,35432E-117,2 - - 8,07402E-11,31,99543E00,82 - - - - 7,32792E-276,24,75567E-176,54,01533E-175,93,97212E-12,76,13421E059,22,14723E-13,33,34528E022,79,79302E-29,64,50334E-14,42,20057E-110,15,73370E-122,62,71655E-112,7
0.6 SBToolbox26,95866E-10,001,44652E00,001,20998E-10,006,38655E-20,006,58263E-10,003,39908E-30,008,29253E-10,001,63620E-10,002,63540E00,008,18396E-10,001,97911E00,009,39505E-20,001,93184E-10,003,07995E-10,002,02603E00,001,66439E00,004,08400E-10,003,85371E00,002,07834E-10,004,32559E00,001,08284E-10,004,31287E-10,002,44806E-10,007,40903E-10,003,11330E-10,00
0.6 SBWOdeSolver - - - - 1,20998E-10,00 - - 6,58260E-10,003,39966E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31314E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 VCell - - - - 1,20998E-10,00 - - 6,58260E-10,003,39965E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.6 copasi - - - - 1,20998E-10,00 - - 6,58260E-10,003,39965E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31314E-10,002,44808E-10,007,40893E-10,003,11324E-10,00
0.6 edu.kgi.roadRunner - - - - 1,20998E-10,00 - - 6,58260E-10,003,39965E-30,00 - - 1,63618E-10,00 - - 8,18393E-10,001,97910E00,00 - - - - 3,07997E-10,002,02603E00,001,66440E00,004,08401E-10,003,85366E00,002,07844E-10,004,32558E00,001,08285E-10,004,31315E-10,002,44808E-10,007,40894E-10,003,11324E-10,00
0.8 BioUML7,29385E-10,001,44083E00,001,24638E-10,006,46858E-20,006,60665E-10,002,95776E-30,009,41381E-10,001,69007E-10,002,44442E00,008,23189E-10,001,97540E00,009,41427E-20,001,92016E-10,002,99024E-10,001,96658E00,001,61678E00,004,19400E-10,003,98864E00,002,25406E-10,004,37893E00,001,13062E-10,004,98294E-10,002,58128E-10,007,50163E-10,003,16228E-10,00
0.8 ByoDyn7,29385E-10,001,44083E00,001,24638E-10,006,46858E-20,006,60665E-10,002,95776E-30,009,41381E-10,001,69007E-10,002,44442E00,008,23189E-10,001,97540E00,009,41427E-20,001,92016E-10,002,99024E-10,001,96658E00,001,61678E00,004,19400E-10,003,98864E00,002,25406E-10,004,37893E00,001,13062E-10,004,98294E-10,002,58128E-10,007,50163E-10,003,16228E-10,00
0.8 Jarnac - - - - 1,24638E-10,00 - - 6,60665E-10,002,95776E-30,00 - - 1,69007E-10,00 - - 8,23189E-10,001,97540E00,00 - - - - 2,99024E-10,001,96658E00,001,61678E00,004,19400E-10,003,98864E00,002,25406E-10,004,37893E00,001,13062E-10,004,98294E-10,002,58128E-10,007,50163E-10,003,16228E-10,00
0.8 MathSBML - - - - 1,24638E-10,00 - - 6,60665E-10,002,95776E-30,00 - - 1,69007E-10,00 - - 8,23189E-10,001,97540E00,00 - - - - 2,99024E-10,001,96658E00,001,61678E00,004,19400E-10,003,98864E00,002,25406E-10,004,37893E00,001,13062E-10,004,98294E-10,002,58128E-10,007,50163E-10,003,16228E-10,00
0.8 Oscill8 Core - -