Test: BIOMD0000000054.xml - Ok


test: BIOMD0000000054.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000054.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4770526315.JPG


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables:
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation E T A M I
var error var error var error var error var error
0.0 BioUML2,10000E00,001,00000E00,001,11000E00,001,00000E-20,001,00000E10,00
0.0 ByoDyn2,10000E00,001,00000E00,001,11000E00,001,00000E-20,001,00000E10,00
0.0 Jarnac2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 MathSBML2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 Oscill8 Core2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 SBToolbox22,10000E00,001,00000E00,001,11000E00,001,00000E-20,001,00000E10,00
0.0 SBWOdeSolver2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 copasi2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 edu.kgi.roadRunner2,10000E00,00 - - 1,11000E00,00 - - 1,00000E10,00
0.0 jsim2,10000E00,001,00000E00,001,11000E00,001,00000E-20,001,00000E10,00
0.2 BioUML2,08879E00,009,90327E-10,001,11027E00,001,18076E-20,001,11545E10,00
0.2 ByoDyn2,08879E00,009,90327E-10,001,11027E00,001,18076E-20,001,11545E10,00
0.2 Jarnac2,08879E00,00 - - 1,11027E00,00 - - 1,11545E10,00
0.2 MathSBML2,08879E00,00 - - 1,11027E00,00 - - 1,11545E10,00
0.2 Oscill8 Core2,07660E00,58 - - 1,11000E00,00 - - 1,11496E10,00
0.2 SBToolbox22,08902E00,009,90524E-10,001,11030E00,001,17713E-20,311,11549E10,00
0.2 SBWOdeSolver2,08879E00,00 - - 1,11027E00,00 - - 1,11545E10,00
0.2 copasi2,08879E00,00 - - 1,11027E00,00 - - 1,11545E10,00
0.2 edu.kgi.roadRunner2,08879E00,00 - - 1,11027E00,00 - - 1,11545E10,00
0.2 jsim2,08879E00,009,90327E-10,001,11027E00,001,18076E-20,001,11545E10,00
0.4 BioUML2,07397E00,009,77280E-10,001,11128E00,001,45908E-20,001,21954E10,00
0.4 ByoDyn2,07397E00,009,77280E-10,001,11128E00,001,45908E-20,001,21954E10,00
0.4 Jarnac2,07397E00,00 - - 1,11128E00,00 - - 1,21954E10,00
0.4 MathSBML2,07397E00,00 - - 1,11128E00,00 - - 1,21954E10,00
0.4 Oscill8 Core2,00987E03,1 - - 1,11000E00,12 - - 1,21693E10,21
0.4 SBToolbox22,07413E00,009,77375E-10,001,11130E00,001,45742E-20,111,21960E10,00
0.4 SBWOdeSolver2,07397E00,00 - - 1,11128E00,00 - - 1,21954E10,00
0.4 copasi2,07397E00,00 - - 1,11128E00,00 - - 1,21954E10,00
0.4 edu.kgi.roadRunner2,07397E00,00 - - 1,11128E00,00 - - 1,21954E10,00
0.4 jsim2,07397E00,009,77280E-10,001,11128E00,001,45908E-20,001,21954E10,00
0.6 BioUML2,06101E00,009,65599E-10,001,11286E00,001,74521E-20,001,31382E10,00
0.6 ByoDyn2,06101E00,009,65599E-10,001,11286E00,001,74521E-20,001,31382E10,00
0.6 Jarnac2,06101E00,00 - - 1,11286E00,00 - - 1,31382E10,00
0.6 MathSBML2,06101E00,00 - - 1,11286E00,00 - - 1,31382E10,00
0.6 Oscill8 Core1,90471E07,6 - - 1,11000E00,26 - - 1,30736E10,48
0.6 SBToolbox22,06134E00,009,65783E-10,001,11289E00,001,74254E-20,151,31373E10,00
0.6 SBWOdeSolver2,06101E00,00 - - 1,11286E00,00 - - 1,31382E10,00
0.6 copasi2,06101E00,00 - - 1,11286E00,00 - - 1,31382E10,00
0.6 edu.kgi.roadRunner2,06101E00,00 - - 1,11286E00,00 - - 1,31382E10,00
0.6 jsim2,06101E00,009,65599E-10,001,11286E00,001,74521E-20,001,31382E10,00
0.8 BioUML2,04991E00,009,55355E-10,001,11484E00,002,02831E-20,001,39941E10,00
0.8 ByoDyn2,04991E00,009,55355E-10,001,11484E00,002,02831E-20,001,39941E10,00
0.8 Jarnac2,04991E00,00 - - 1,11484E00,00 - - 1,39941E10,00
0.8 MathSBML2,04991E00,00 - - 1,11484E00,00 - - 1,39941E10,00
0.8 Oscill8 Core1,76546E013,9 - - 1,11000E00,43 - - 1,38757E10,85
0.8 SBToolbox22,05014E00,009,55489E-10,001,11489E00,002,02607E-20,111,39967E10,00
0.8 SBWOdeSolver2,04991E00,00 - - 1,11484E00,00 - - 1,39941E10,00
0.8 copasi2,04991E00,00 - - 1,11484E00,00 - - 1,39941E10,00
0.8 edu.kgi.roadRunner2,04991E00,00 - - 1,11484E00,00 - - 1,39941E10,00
0.8 jsim2,04991E00,009,55355E-10,001,11484E00,002,02831E-20,001,39941E10,00
1.0 BioUML2,04041E00,009,46359E-10,001,11710E00,002,30497E-20,001,47725E10,00
1.0 ByoDyn2,04041E00,009,46359E-10,001,11710E00,002,30497E-20,001,47725E10,00
1.0 Jarnac2,04041E00,00 - - 1,11710E00,00 - - 1,47725E10,00
1.0 MathSBML2,04041E00,00 - - 1,11710E00,00 - - 1,47725E10,00
1.0 Oscill8 Core1,59597E021,8 - - 1,11000E00,64 - - 1,45871E11,3
1.0 SBToolbox22,04065E00,009,46532E-10,001,11719E00,002,30215E-20,121,47733E10,00
1.0 SBWOdeSolver2,04041E00,00 - - 1,11710E00,00 - - 1,47725E10,00
1.0 copasi2,04041E00,00 - - 1,11710E00,00 - - 1,47725E10,00
1.0 edu.kgi.roadRunner2,04041E00,00 - - 1,11710E00,00 - - 1,47725E10,00
1.0 jsim2,04041E00,009,46359E-10,001,11710E00,002,30497E-20,001,47725E10,00
1.2 BioUML2,03229E00,009,38448E-10,001,11957E00,002,57313E-20,001,54814E10,00
1.2 ByoDyn2,03229E00,009,38448E-10,001,11957E00,002,57313E-20,001,54814E10,00
1.2 Jarnac2,03229E00,00 - - 1,11957E00,00 - - 1,54814E10,00
1.2 MathSBML2,03229E00,00 - - 1,11957E00,00 - - 1,54814E10,00
1.2 Oscill8 Core1,39967E031,1 - - 1,11000E00,85 - - 1,52180E11,7
1.2 SBToolbox22,03264E00,009,38644E-10,001,11968E00,002,56980E-20,131,54829E10,00
1.2 SBWOdeSolver2,03229E00,00 - - 1,11957E00,00 - - 1,54814E10,00
1.2 copasi2,03229E00,00 - - 1,11957E00,00 - - 1,54814E10,00
1.2 edu.kgi.roadRunner2,03229E00,00 - - 1,11957E00,00 - - 1,54814E10,00
1.2 jsim2,03229E00,009,38448E-10,001,11957E00,002,57313E-20,001,54814E10,00
1.4 BioUML2,02539E00,009,31493E-10,001,12221E00,002,83137E-20,001,61278E10,00
1.4 ByoDyn2,02539E00,009,31493E-10,001,12221E00,002,83137E-20,001,61278E10,00
1.4 Jarnac2,02539E00,00 - - 1,12221E00,00 - - 1,61278E10,00
1.4 MathSBML2,02539E00,00 - - 1,12221E00,00 - - 1,61278E10,00
1.4 Oscill8 Core1,17959E041,8 - - 1,11000E01,1 - - 1,57776E12,2
1.4 SBToolbox22,02556E00,009,31606E-10,001,12229E00,002,82971E-20,001,61337E10,00
1.4 SBWOdeSolver2,02539E00,00 - - 1,12221E00,00 - - 1,61278E10,00
1.4 copasi2,02539E00,00 - - 1,12221E00,00 - - 1,61278E10,00
1.4 edu.kgi.roadRunner2,02539E00,00 - - 1,12221E00,00 - - 1,61278E10,00
1.4 jsim2,02539E00,009,31493E-10,001,12221E00,002,83137E-20,001,61278E10,00
1.6 BioUML2,01957E00,009,25389E-10,001,12497E00,003,07880E-20,001,67178E10,00
1.6 ByoDyn2,01957E00,009,25389E-10,001,12497E00,003,07880E-20,001,67178E10,00
1.6 Jarnac2,01957E00,00 - - 1,12497E00,00 - - 1,67178E10,00
1.6 MathSBML2,01957E00,00 - - 1,12497E00,00 - - 1,67178E10,00
1.6 Oscill8 Core9,38420E-153,5 - - 1,11000E01,3 - - 1,62739E12,7
1.6 SBToolbox22,01973E00,009,25455E-10,001,12498E00,003,07848E-20,001,67235E10,00
1.6 SBWOdeSolver2,01957E00,00 - - 1,12497E00,00 - - 1,67178E10,00
1.6 copasi2,01957E00,00 - - 1,12497E00,00 - - 1,67177E10,00
1.6 edu.kgi.roadRunner2,01957E00,00 - - 1,12497E00,00 - - 1,67178E10,00
1.6 jsim2,01957E00,009,25389E-10,001,12497E00,003,07880E-20,001,67178E10,00
1.8 BioUML2,01473E00,009,20047E-10,001,12783E00,003,31485E-20,001,72565E10,00
1.8 ByoDyn2,01473E00,009,20047E-10,001,12783E00,003,31485E-20,001,72565E10,00
1.8 Jarnac2,01473E00,00 - - 1,12783E00,00 - - 1,72565E10,00
1.8 MathSBML2,01473E00,00 - - 1,12783E00,00 - - 1,72565E10,00
1.8 Oscill8 Core6,78539E-166,3 - - 1,11000E01,6 - - 1,67141E13,1
1.8 SBToolbox22,01494E00,009,20145E-10,001,12788E00,003,31371E-20,001,72613E10,00
1.8 SBWOdeSolver2,01473E00,00 - - 1,12783E00,00 - - 1,72565E10,00
1.8 copasi2,01473E00,00 - - 1,12783E00,00 - - 1,72565E10,00
1.8 edu.kgi.roadRunner2,01473E00,00 - - 1,12783E00,00 - - 1,72565E10,00
1.8 jsim2,01473E00,009,20047E-10,001,12783E00,003,31485E-20,001,72565E10,00
2.0 BioUML2,01078E00,009,15393E-10,001,13078E00,003,53925E-20,001,77488E10,00
2.0 ByoDyn2,01078E00,009,15393E-10,001,13078E00,003,53925E-20,001,77488E10,00
2.0 Jarnac2,01078E00,00 - - 1,13078E00,00 - - 1,77488E10,00
2.0 MathSBML2,01078E00,00 - - 1,13078E00,00 - - 1,77488E10,00
2.0 Oscill8 Core4,02067E-180,0 - - 1,11000E01,8 - - 1,71045E13,6
2.0 SBToolbox22,01092E00,009,15454E-10,001,13086E00,003,53928E-20,001,77564E10,00
2.0 SBWOdeSolver2,01078E00,00 - - 1,13078E00,00 - - 1,77488E10,00
2.0 copasi2,01078E00,00 - - 1,13078E00,00 - - 1,77487E10,00
2.0 edu.kgi.roadRunner2,01078E00,00 - - 1,13078E00,00 - - 1,77488E10,00
2.0 jsim2,01078E00,009,15393E-10,001,13078E00,003,53925E-20,001,77488E10,00
2.2 BioUML2,00764E00,009,11362E-10,001,13380E00,003,75192E-20,001,81985E10,00
2.2 ByoDyn2,00764E00,009,11362E-10,001,13380E00,003,75192E-20,001,81985E10,00
2.2 Jarnac2,00764E00,00 - - 1,13380E00,00 - - 1,81985E10,00
2.2 MathSBML2,00764E00,00 - - 1,13380E00,00 - - 1,81985E10,00
2.2 Oscill8 Core1,10878E-194,5 - - 1,11000E02,1 - - 1,74508E14,1
2.2 SBToolbox22,00764E00,009,11352E-10,001,13386E00,003,75391E-20,001,82092E10,00
2.2 SBWOdeSolver2,00764E00,00 - - 1,13380E00,00 - - 1,81985E10,00
2.2 copasi2,00764E00,00 - - 1,13380E00,00 - - 1,81985E10,00
2.2 edu.kgi.roadRunner2,00764E00,00 - - 1,13380E00,00 - - 1,81985E10,00
2.2 jsim2,00764E00,009,11362E-10,001,13380E00,003,75192E-20,001,81985E10,00
2.4 BioUML2,00524E00,009,07897E-10,001,13687E00,003,95292E-20,001,86094E10,00
2.4 ByoDyn2,00524E00,009,07897E-10,001,13687E00,003,95292E-20,001,86094E10,00
2.4 Jarnac2,00524E00,00 - - 1,13687E00,00 - - 1,86094E10,00
2.4 MathSBML2,00524E00,00 - - 1,13687E00,00 - - 1,86094E10,00
2.4 Oscill8 Core-1,93362E-1110 - - 1,11000E02,4 - - 1,77579E14,6
2.4 SBToolbox22,00522E00,009,07888E-10,001,13695E00,003,95487E-20,001,86182E10,00
2.4 SBWOdeSolver2,00524E00,00 - - 1,13687E00,00 - - 1,86094E10,00
2.4 copasi2,00524E00,00 - - 1,13687E00,00 - - 1,86094E10,00
2.4 edu.kgi.roadRunner2,00524E00,00 - - 1,13687E00,00 - - 1,86094E10,00
2.4 jsim2,00524E00,009,07897E-10,001,13687E00,003,95292E-20,001,86094E10,00
2.6 BioUML2,00352E00,009,04951E-10,001,13999E00,004,14243E-20,001,89846E10,00
2.6 ByoDyn2,00352E00,009,04951E-10,001,13999E00,004,14243E-20,001,89846E10,00
2.6 Jarnac2,00352E00,00 - - 1,13999E00,00 - - 1,89846E10,00
2.6 MathSBML2,00352E00,00 - - 1,13999E00,00 - - 1,89846E10,00
2.6 Oscill8 Core-5,09179E-1125 - - 1,11000E02,6 - - 1,80303E15,0
2.6 SBToolbox22,00360E00,009,04966E-10,001,14005E00,004,14381E-20,001,89933E10,00
2.6 SBWOdeSolver2,00351E00,00 - - 1,13999E00,00 - - 1,89846E10,00
2.6 copasi2,00352E00,00 - - 1,13999E00,00 - - 1,89846E10,00
2.6 edu.kgi.roadRunner2,00352E00,00 - - 1,13999E00,00 - - 1,89846E10,00
2.6 jsim2,00352E00,009,04951E-10,001,13999E00,004,14243E-20,001,89846E10,00
2.8 BioUML2,00243E00,009,02479E-10,001,14315E00,004,32072E-20,001,93271E10,00
2.8 ByoDyn2,00243E00,009,02479E-10,001,14315E00,004,32072E-20,001,93271E10,00
2.8 Jarnac2,00243E00,00 - - 1,14315E00,00 - - 1,93271E10,00
2.8 MathSBML2,00243E00,00 - - 1,14315E00,00 - - 1,93271E10,00
2.8 Oscill8 Core-8,35262E-1142 - - 1,11000E02,9 - - 1,82719E15,5
2.8 SBToolbox22,00243E00,009,02464E-10,001,14324E00,004,32304E-20,001,93375E10,00
2.8 SBWOdeSolver2,00243E00,00 - - 1,14315E00,00 - - 1,93271E10,00
2.8 copasi2,00243E00,00 - - 1,14315E00,00 - - 1,93270E10,00
2.8 edu.kgi.roadRunner2,00243E00,00 - - 1,14315E00,00 - - 1,93271E10,00
2.8 jsim2,00243E00,009,02479E-10,001,14315E00,004,32072E-20,001,93271E10,00
3.0 BioUML2,00191E00,009,00442E-10,001,14635E00,004,48809E-20,001,96393E10,00
3.0 ByoDyn2,00191E00,009,00442E-10,001,14635E00,004,48809E-20,001,96393E10,00
3.0 Jarnac2,00191E00,00 - - 1,14635E00,00 - - 1,96393E10,00
3.0 MathSBML2,00191E00,00 - - 1,14635E00,00 - - 1,96393E10,00
3.0 Oscill8 Core-1,17045E0158 - - 1,11000E03,2 - - 1,84861E15,9
3.0 SBToolbox22,00190E00,009,00377E-10,001,14644E00,004,49204E-20,001,96525E10,00
3.0 SBWOdeSolver2,00191E00,00 - - 1,14635E00,00 - - 1,96393E10,00
3.0 copasi2,00192E00,00 - - 1,14635E00,00 - - 1,96392E10,00
3.0 edu.kgi.roadRunner2,00191E00,00 - - 1,14635E00,00 - - 1,96393E10,00
3.0 jsim2,00191E00,009,00442E-10,001,14635E00,004,48809E-20,001,96393E10,00
3.2 BioUML2,00194E00,008,98807E-10,001,14958E00,004,64489E-20,001,99236E10,00
3.2 ByoDyn2,00194E00,008,98807E-10,001,14958E00,004,64489E-20,001,99236E10,00
3.2 Jarnac2,00194E00,00 - - 1,14958E00,00 - - 1,99236E10,00
3.2 MathSBML2,00194E00,00 - - 1,14958E00,00 - - 1,99236E10,00
3.2 Oscill8 Core-1,51372E0176 - - 1,11000E03,4 - - 1,86762E16,3
3.2 SBToolbox22,00180E00,008,98702E-10,001,14964E00,004,65010E-20,111,99368E10,00
3.2 SBWOdeSolver2,00193E00,00 - - 1,14958E00,00 - - 1,99236E10,00
3.2 copasi2,00194E00,00 - - 1,14958E00,00 - - 1,99236E10,00
3.2 edu.kgi.roadRunner2,00194E00,00 - - 1,14958E00,00 - - 1,99236E10,00
3.2 jsim2,00194E00,008,98807E-10,001,14958E00,004,64489E-20,001,99236E10,00
3.4 BioUML2,00246E00,008,97542E-10,001,15284E00,004,79151E-20,002,01822E10,00
3.4 ByoDyn2,00246E00,008,97542E-10,001,15284E00,004,79151E-20,002,01822E10,00
3.4 Jarnac2,00246E00,00 - - 1,15284E00,00 - - 2,01822E10,00
3.4 MathSBML2,00246E00,00 - - 1,15284E00,00 - - 2,01822E10,00
3.4 Oscill8 Core-1,86415E0193 - - 1,11000E03,7 - - 1,88447E16,6
3.4 SBToolbox22,00240E00,008,97487E-10,001,15287E00,004,79539E-20,002,01929E10,00
3.4 SBWOdeSolver2,00246E00,00 - - 1,15283E00,00 - - 2,01822E10,00
3.4 copasi2,00246E00,00 - - 1,15284E00,00 - - 2,01821E10,00
3.4 edu.kgi.roadRunner2,00246E00,00 - - 1,15284E00,00 - - 2,01822E10,00
3.4 jsim2,00246E00,008,97542E-10,001,15284E00,004,79151E-20,002,01822E10,00
3.6 BioUML2,00345E00,008,96619E-10,001,15611E00,004,92832E-20,002,04168E10,00
3.6 ByoDyn2,00345E00,008,96619E-10,001,15611E00,004,92832E-20,002,04168E10,00
3.6 Jarnac2,00345E00,00 - - 1,15611E00,00 - - 2,04168E10,00
3.6 MathSBML2,00345E00,00 - - 1,15611E00,00 - - 2,04168E10,00
3.6 Oscill8 Core-2,22093E0211 - - 1,11000E04,0 - - 1,89942E17,0
3.6 SBToolbox22,00340E00,008,96554E-10,001,15616E00,004,93239E-20,002,04287E10,00
3.6 SBWOdeSolver2,00345E00,00 - - 1,15611E00,00 - - 2,04168E10,00
3.6 copasi2,00345E00,00 - - 1,15611E00,00 - - 2,04168E10,00
3.6 edu.kgi.roadRunner2,00345E00,00 - - 1,15611E00,00 - - 2,04168E10,00
3.6 jsim2,00345E00,008,96619E-10,001,15611E00,004,92832E-20,002,04168E10,00
3.8 BioUML2,00487E00,008,96015E-10,001,15941E00,005,05573E-20,002,06292E10,00
3.8 ByoDyn2,00487E00,008,96015E-10,001,15941E00,005,05573E-20,002,06292E10,00
3.8 Jarnac2,00487E00,00 - - 1,15941E00,00 - - 2,06292E10,00
3.8 MathSBML2,00487E00,00 - - 1,15941E00,00 - - 2,06292E10,00
3.8 Oscill8 Core-2,58334E0229 - - 1,11000E04,3 - - 1,91268E17,3
3.8 SBToolbox22,00476E00,008,95921E-10,001,15946E00,005,06084E-20,102,06432E10,00
3.8 SBWOdeSolver2,00488E00,00 - - 1,15941E00,00 - - 2,06292E10,00
3.8 copasi2,00487E00,00 - - 1,15941E00,00 - - 2,06292E10,00
3.8 edu.kgi.roadRunner2,00487E00,00 - - 1,15941E00,00 - - 2,06292E10,00
3.8 jsim2,00487E00,008,96015E-10,001,15941E00,005,05573E-20,002,06292E10,00
4.0 BioUML2,00669E00,008,95705E-10,001,16273E00,005,17414E-20,002,08211E10,00
4.0 ByoDyn2,00669E00,008,95705E-10,001,16273E00,005,17414E-20,002,08211E10,00
4.0 Jarnac2,00669E00,00 - - 1,16273E00,00 - - 2,08211E10,00
4.0 MathSBML2,00669E00,00 - - 1,16273E00,00 - - 2,08211E10,00
4.0 Oscill8 Core-2,95076E0247 - - 1,11000E04,5 - - 1,92444E17,6
4.0 SBToolbox22,00656E00,008,95574E-10,001,16276E00,005,18062E-20,132,08364E10,00
4.0 SBWOdeSolver2,00668E00,00 - - 1,16272E00,00 - - 2,08211E10,00
4.0 copasi2,00669E00,00 - - 1,16273E00,00 - - 2,08211E10,00
4.0 edu.kgi.roadRunner2,00669E00,00 - - 1,16273E00,00 - - 2,08211E10,00
4.0 jsim2,00669E00,008,95705E-10,001,16273E0