Test: BIOMD0000000055.xml - Ok

test: BIOMD0000000055.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000055.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL0737170531.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: cLc  cYc  cXc  cPn  cYm  cTn  cTm  cXm  cXn  cTc  cLm  cLn  cYn 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation cLc cYc cXc cPn cYm cTn cTm cXm cXn cTc cLm cLn cYn
var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 ByoDyn1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 MathSBML1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 SBToolbox21,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 SBWOdeSolver1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 VCell1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 copasi1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.0 edu.kgi.roadRunner1,50000E-20,004,00000E-30,001,34000E00,008,35000E-10,003,70000E-20,004,00000E-10,004,56000E-10,008,00000E-20,004,00000E-10,008,70000E00,005,39000E-10,008,55000E-20,001,30000E-20,00
0.2 BioUML2,35777E-20,007,27119E-30,001,33106E00,006,02966E-10,001,52019E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73836E-10,009,82556E-20,001,39100E-20,00
0.2 ByoDyn2,35777E-20,007,27119E-30,001,33106E00,006,02966E-10,001,52019E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73836E-10,009,82556E-20,001,39100E-20,00
0.2 MathSBML2,35777E-20,007,27119E-30,001,33106E00,006,02966E-10,001,52019E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73836E-10,009,82556E-20,001,39100E-20,00
0.2 SBToolbox22,35777E-20,007,26425E-30,001,33101E00,006,02942E-10,001,52044E-10,003,73828E-10,004,58777E-10,007,50098E-20,003,97852E-10,008,24624E00,008,73880E-10,009,82291E-20,001,39103E-20,00
0.2 SBWOdeSolver2,35777E-20,007,27121E-30,001,33106E00,006,02967E-10,001,52017E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73833E-10,009,82559E-20,001,39101E-20,00
0.2 VCell1,98757E-215,75,91898E-318,51,33105E00,007,13860E-118,49,79709E-235,63,72262E-10,424,58891E-10,007,49753E-20,003,97851E-10,008,24582E00,007,20568E-117,59,33228E-25,01,36921E-21,6
0.2 copasi2,35777E-20,007,27119E-30,001,33106E00,006,02966E-10,001,52019E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73836E-10,009,82556E-20,001,39100E-20,00
0.2 edu.kgi.roadRunner2,35777E-20,007,27119E-30,001,33106E00,006,02966E-10,001,52019E-10,003,73825E-10,004,58767E-10,007,50099E-20,003,97851E-10,008,24625E00,008,73836E-10,009,82556E-20,001,39100E-20,00
0.4 BioUML3,02396E-20,001,19986E-20,001,32058E00,004,29030E-10,001,82055E-10,003,46186E-10,004,64459E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.4 ByoDyn3,02396E-20,001,19986E-20,001,32058E00,004,29030E-10,001,82055E-10,003,46186E-10,004,64459E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.4 MathSBML3,02396E-20,001,19986E-20,001,32058E00,004,29030E-10,001,82055E-10,003,46186E-10,004,64459E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.4 SBToolbox23,02424E-20,001,19884E-20,001,32062E00,004,28950E-10,001,82102E-10,003,46185E-10,004,64513E-10,007,02863E-20,003,95316E-10,007,81843E00,001,08717E00,001,26488E-10,001,65730E-20,00
0.4 SBWOdeSolver3,02395E-20,001,19986E-20,001,32058E00,004,29032E-10,001,82053E-10,003,46186E-10,004,64460E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.4 VCell2,40499E-220,58,76493E-326,91,32054E00,006,12533E-142,81,22670E-132,63,44104E-10,604,64226E-10,007,01878E-20,143,95315E-10,007,81720E00,008,59752E-120,91,09967E-113,11,53932E-27,1
0.4 copasi3,02396E-20,001,19986E-20,001,32058E00,004,29030E-10,001,82055E-10,003,46186E-10,004,64459E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.4 edu.kgi.roadRunner3,02396E-20,001,19986E-20,001,32058E00,004,29030E-10,001,82055E-10,003,46186E-10,004,64459E-10,007,02858E-20,003,95318E-10,007,81840E00,001,08705E00,001,26541E-10,001,65786E-20,00
0.6 BioUML3,43689E-20,001,53019E-20,001,30869E00,003,01197E-10,001,70876E-10,003,19784E-10,004,76838E-10,006,57194E-20,003,92378E-10,007,41921E00,001,21405E00,001,57281E-10,002,07031E-20,00
0.6 ByoDyn3,43689E-20,001,53019E-20,001,30869E00,003,01197E-10,001,70876E-10,003,19784E-10,004,76838E-10,006,57194E-20,003,92378E-10,007,41921E00,001,21405E00,001,57281E-10,002,07031E-20,00
0.6 MathSBML3,43689E-20,001,53019E-20,001,30869E00,003,01197E-10,001,70876E-10,003,19784E-10,004,76838E-10,006,57194E-20,003,92378E-10,007,41921E00,001,21405E00,001,57281E-10,002,07031E-20,00
0.6 SBToolbox23,43785E-20,001,52959E-20,001,30874E00,003,00968E-10,001,71014E-10,003,19776E-10,004,76943E-10,006,57205E-20,003,92380E-10,007,41935E00,001,21442E00,001,57191E-10,002,06824E-20,00
0.6 SBWOdeSolver3,43688E-20,001,53018E-20,001,30869E00,003,01200E-10,001,70875E-10,003,19784E-10,004,76839E-10,006,57195E-20,003,92378E-10,007,41921E00,001,21405E00,001,57280E-10,002,07031E-20,00
0.6 VCell2,72721E-220,61,11209E-227,31,30861E00,005,28535E-175,51,26136E-126,23,17578E-10,694,74573E-10,476,55601E-20,243,92368E-10,007,41619E00,009,65295E-120,51,29385E-117,71,80393E-212,8
0.6 copasi3,43689E-20,001,53019E-20,001,30869E00,003,01197E-10,001,70876E-10,003,19784E-10,004,76838E-10,006,57194E-20,003,92378E-10,007,41921E00,001,21405E00,001,57281E-10,002,07031E-20,00
0.6 edu.kgi.roadRunner3,43689E-20,001,53019E-20,001,30869E00,003,01197E-10,001,70876E-10,003,19784E-10,004,76838E-10,006,57194E-20,003,92378E-10,007,41921E00,001,21405E00,001,57281E-10,002,07031E-20,00
0.8 BioUML3,66560E-20,001,67154E-20,001,29550E00,002,09031E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05349E00,001,28005E00,001,84280E-10,002,53891E-20,00
0.8 ByoDyn3,66560E-20,001,67154E-20,001,29550E00,002,09031E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05349E00,001,28005E00,001,84280E-10,002,53891E-20,00
0.8 MathSBML3,66560E-20,001,67154E-20,001,29550E00,002,09031E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05349E00,001,28005E00,001,84280E-10,002,53891E-20,00
0.8 SBToolbox23,66686E-20,001,67204E-20,001,29546E00,002,08722E-10,151,45043E-10,002,95741E-10,004,95845E-10,006,13073E-20,003,89034E-10,007,05379E00,001,28043E00,001,84222E-10,002,53603E-20,00
0.8 SBWOdeSolver3,66559E-20,001,67152E-20,001,29550E00,002,09033E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05350E00,001,28004E00,001,84279E-10,002,53891E-20,00
0.8 VCell2,97111E-218,91,25868E-224,71,29535E00,004,59509E-11201,18941E-117,92,93511E-10,754,90491E-11,16,10952E-20,343,89011E-10,007,04661E00,001,04384E018,51,48393E-119,42,12202E-216,3
0.8 copasi3,66560E-20,001,67154E-20,001,29550E00,002,09031E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05349E00,001,28005E00,001,84280E-10,002,53891E-20,00
0.8 edu.kgi.roadRunner3,66560E-20,001,67154E-20,001,29550E00,002,09031E-10,001,44953E-10,002,95757E-10,004,95728E-10,006,13058E-20,003,89033E-10,007,05349E00,001,28005E00,001,84280E-10,002,53891E-20,00
1.0 BioUML3,76250E-20,001,66568E-20,001,28107E00,001,43715E-10,001,17109E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72458E00,001,30338E00,002,05185E-10,002,98632E-20,00
1.0 ByoDyn3,76250E-20,001,66568E-20,001,28107E00,001,43715E-10,001,17109E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72458E00,001,30338E00,002,05185E-10,002,98632E-20,00
1.0 MathSBML3,76250E-20,001,66568E-20,001,28107E00,001,43715E-10,001,17109E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72458E00,001,30338E00,002,05185E-10,002,98632E-20,00
1.0 SBToolbox23,76416E-20,001,66739E-20,101,28108E00,001,43325E-10,271,17184E-10,002,74539E-10,005,18601E-10,005,70856E-20,003,85300E-10,006,72486E00,001,30396E00,002,05171E-10,002,98309E-20,00
1.0 SBWOdeSolver3,76249E-20,001,66567E-20,001,28107E00,001,43718E-10,001,17110E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72459E00,001,30338E00,002,05184E-10,002,98631E-20,00
1.0 VCell3,15065E-216,31,32236E-220,61,28085E00,004,03252E-11811,07479E-18,22,72205E-10,855,10557E-11,55,68288E-20,443,85259E-10,006,71168E00,191,10062E015,61,65469E-119,42,45126E-217,8
1.0 copasi3,76250E-20,001,66568E-20,001,28107E00,001,43715E-10,001,17109E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72458E00,001,30338E00,002,05185E-10,002,98632E-20,00
1.0 edu.kgi.roadRunner3,76250E-20,001,66568E-20,001,28107E00,001,43715E-10,001,17109E-10,002,74547E-10,005,18555E-10,005,70828E-20,003,85298E-10,006,72458E00,001,30338E00,002,05185E-10,002,98632E-20,00
1.2 BioUML3,76671E-20,001,57041E-20,001,26552E00,009,80946E-20,009,26099E-20,002,56210E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43334E00,001,29731E00,002,19530E-10,003,36542E-20,00
1.2 ByoDyn3,76671E-20,001,57041E-20,001,26552E00,009,80946E-20,009,26099E-20,002,56210E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43334E00,001,29731E00,002,19530E-10,003,36542E-20,00
1.2 MathSBML3,76671E-20,001,57041E-20,001,26552E00,009,80946E-20,009,26099E-20,002,56210E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43334E00,001,29731E00,002,19530E-10,003,36542E-20,00
1.2 SBToolbox23,76809E-20,001,57203E-20,101,26550E00,009,77484E-20,359,26148E-20,002,56202E-10,005,42834E-10,005,31032E-20,003,81195E-10,006,43364E00,001,29780E00,002,19563E-10,003,36296E-20,00
1.2 SBWOdeSolver3,76670E-20,001,57040E-20,001,26552E00,009,80964E-20,009,26106E-20,002,56211E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43335E00,001,29731E00,002,19529E-10,003,36541E-20,00
1.2 VCell3,27747E-213,01,32461E-215,71,26519E00,003,57738E-12659,52372E-22,82,53683E-10,985,32746E-11,95,28055E-20,563,81133E-10,006,41284E00,321,13982E012,11,79969E-118,02,76019E-217,9
1.2 copasi3,76671E-20,001,57041E-20,001,26552E00,009,80946E-20,009,26099E-20,002,56210E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43334E00,001,29731E00,002,19530E-10,003,36542E-20,00
1.2 edu.kgi.roadRunner3,76671E-20,001,57041E-20,001,26552E00,009,80946E-20,009,26099E-20,002,56210E-10,005,42842E-10,005,31005E-20,003,81194E-10,006,43334E00,001,29731E00,002,19530E-10,003,36542E-20,00
1.4 BioUML3,70688E-20,001,43337E-20,001,24894E00,006,65945E-20,007,29985E-20,002,40589E-10,005,66993E-10,004,94033E-20,003,76746E-10,006,17874E00,001,27134E00,002,27758E-10,003,65632E-20,00
1.4 ByoDyn3,70688E-20,001,43337E-20,001,24894E00,006,65945E-20,007,29985E-20,002,40589E-10,005,66993E-10,004,94033E-20,003,76746E-10,006,17874E00,001,27134E00,002,27758E-10,003,65632E-20,00
1.4 MathSBML3,70688E-20,001,43337E-20,001,24894E00,006,65945E-20,007,29985E-20,002,40589E-10,005,66993E-10,004,94033E-20,003,76746E-10,006,17874E00,001,27134E00,002,27758E-10,003,65632E-20,00
1.4 SBToolbox23,70819E-20,001,43482E-20,101,24893E00,006,62736E-20,487,29578E-20,002,40581E-10,005,66923E-10,004,94059E-20,003,76752E-10,006,17887E00,001,27174E00,002,27831E-10,003,65476E-20,00
1.4 SBWOdeSolver3,70687E-20,001,43337E-20,001,24894E00,006,65960E-20,007,29992E-20,002,40590E-10,005,66993E-10,004,94034E-20,003,76746E-10,006,17875E00,001,27134E00,002,27757E-10,003,65630E-20,00
1.4 VCell3,36118E-29,31,28798E-210,11,24851E00,003,21158E-13828,39099E-214,92,37805E-11,25,55305E-12,04,90660E-20,683,76659E-10,006,14968E00,471,16479E08,41,91714E-115,83,03004E-217,1
1.4 copasi3,70687E-20,001,43337E-20,001,24894E00,006,65945E-20,007,29984E-20,002,40589E-10,005,66993E-10,004,94033E-20,003,76746E-10,006,17874E00,001,27134E00,002,27758E-10,003,65632E-20,00
1.4 edu.kgi.roadRunner3,70688E-20,001,43337E-20,001,24894E00,006,65945E-20,007,29985E-20,002,40589E-10,005,66993E-10,004,94033E-20,003,76746E-10,006,17874E00,001,27134E00,002,27758E-10,003,65632E-20,00
1.6 BioUML3,60370E-20,001,28658E-20,001,23146E00,004,50333E-20,005,81602E-20,002,27419E-10,005,90208E-10,004,60225E-20,003,71985E-10,005,95867E00,001,23216E00,002,30709E-10,003,85770E-20,00
1.6 ByoDyn3,60370E-20,001,28658E-20,001,23146E00,004,50333E-20,005,81602E-20,002,27419E-10,005,90208E-10,004,60225E-20,003,71985E-10,005,95867E00,001,23216E00,002,30709E-10,003,85770E-20,00
1.6 MathSBML3,60370E-20,001,28658E-20,001,23146E00,004,50333E-20,005,81602E-20,002,27419E-10,005,90208E-10,004,60225E-20,003,71985E-10,005,95867E00,001,23216E00,002,30709E-10,003,85770E-20,00
1.6 SBToolbox23,60474E-20,001,28745E-20,001,23144E00,004,47776E-20,575,80952E-20,112,27408E-10,005,90099E-10,004,60248E-20,003,71988E-10,005,95873E00,001,23245E00,002,30795E-10,003,85690E-20,00
1.6 SBWOdeSolver3,60369E-20,001,28658E-20,001,23146E00,004,50344E-20,005,81608E-20,002,27419E-10,005,90207E-10,004,60226E-20,003,71985E-10,005,95867E00,001,23216E00,002,30708E-10,003,85768E-20,00
1.6 VCell3,40966E-25,41,23068E-24,31,23091E00,002,91931E-15487,41789E-227,52,24330E-11,45,77027E-12,24,56392E-20,833,71869E-10,005,92043E00,641,17825E04,42,00770E-113,03,25251E-215,7
1.6 copasi3,60370E-20,001,28658E-20,001,23146E00,004,50333E-20,005,81601E-20,002,27419E-10,005,90208E-10,004,60225E-20,003,71985E-10,005,95867E00,001,23216E00,002,30709E-10,003,85770E-20,00
1.6 edu.kgi.roadRunner3,60370E-20,001,28658E-20,001,23146E00,004,50333E-20,005,81602E-20,002,27419E-10,005,90208E-10,004,60225E-20,003,71985E-10,005,95867E00,001,23216E00,002,30709E-10,003,85770E-20,00
1.8 BioUML3,47191E-20,001,14845E-20,001,21320E00,003,03689E-20,004,73667E-20,002,16406E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77055E00,001,18447E00,002,29348E-10,003,97876E-20,00
1.8 ByoDyn3,47191E-20,001,14845E-20,001,21320E00,003,03689E-20,004,73666E-20,002,16406E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77055E00,001,18447E00,002,29348E-10,003,97876E-20,00
1.8 MathSBML3,47191E-20,001,14845E-20,001,21320E00,003,03689E-20,004,73667E-20,002,16406E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77055E00,001,18447E00,002,29348E-10,003,97876E-20,00
1.8 SBToolbox23,47270E-20,001,14879E-20,001,21326E00,003,01608E-20,694,72899E-20,162,16392E-10,006,12067E-10,004,29749E-20,003,66947E-10,005,77045E00,001,18475E00,002,29447E-10,003,97853E-20,00
1.8 SBWOdeSolver3,47191E-20,001,14845E-20,001,21320E00,003,03697E-20,004,73672E-20,002,16407E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77056E00,001,18446E00,002,29348E-10,003,97875E-20,00
1.8 VCell3,42941E-21,21,16558E-21,51,21253E00,002,68694E-17856,61908E-239,72,12977E-11,65,97218E-12,44,25401E-21,03,66795E-10,005,72245E00,831,18239E00,182,07332E-19,63,42665E-213,9
1.8 copasi3,47191E-20,001,14845E-20,001,21320E00,003,03689E-20,004,73666E-20,002,16406E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77055E00,001,18447E00,002,29348E-10,003,97876E-20,00
1.8 edu.kgi.roadRunner3,47191E-20,001,14845E-20,001,21320E00,003,03689E-20,004,73667E-20,002,16406E-10,006,12194E-10,004,29738E-20,003,66945E-10,005,77055E00,001,18447E00,002,29348E-10,003,97876E-20,00
2.0 BioUML3,32194E-20,001,02777E-20,001,19430E00,002,04404E-20,003,97678E-20,002,07270E-10,006,32939E-10,004,02590E-20,003,61660E-10,005,61171E00,001,13151E00,002,24622E-10,004,03329E-20,00
2.0 ByoDyn3,32194E-20,001,02777E-20,001,19430E00,002,04404E-20,003,97678E-20,002,07270E-10,006,32939E-10,004,02590E-20,003,61660E-10,005,61171E00,001,13151E00,002,24622E-10,004,03329E-20,00
2.0 MathSBML3,32194E-20,001,02777E-20,001,19430E00,002,04404E-20,003,97678E-20,002,07270E-10,006,32939E-10,004,02590E-20,003,61660E-10,005,61171E00,001,13151E00,002,24622E-10,004,03329E-20,00
2.0 SBToolbox23,32256E-20,001,02772E-20,001,19430E00,002,02794E-20,793,96912E-20,192,07254E-10,006,32798E-10,00