Test: BIOMD0000000056.xml - Ok

test: BIOMD0000000056.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000056.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6624073334.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: F2P_30  Vdb5_64  Vasbf_60  IEP_34  CDC20i_13  MASS_37  SPN_53  CDC14T_9  ESP1_27  PE_45  Vicdh_67  Vd2f6_62  PDS1_44  C2_4  C5_6  Visbf_68  SBF_49  SIC1_50  CDC6_14  SIC1T_52  CDC15i_11  CDC20_12  BUB2_2  TEM1T_217  F2_29  CLB2T_21  F5P_32  LTE1_35  CLB5_22  CDC6T_16  TEM1GTP_57  Vdb2_63  SIC1P_51  ORI_43  IET_104  SWI5P_55  F5_31  Vdppx_66  CDC15T_79  TEM1GDP_56  PPX_46  NET1_40  BCK2_1  MAD2_36  CDH1_17  CLN2_24  RENT_47  CLB5T_23  CLN3_25  Vd2c1_61  ESP1T_103  D_26  CDC6P_15  Vkpnet_71  Vppf6_73  CKIT_19  mu_39  F_28  CDC14_8  SWI5_54  CLB2_20  C5P_7  NET1T_42  IE_33  Vacdh_58  Vdpds_65  BUD_3  CDC15_10  Vppnet_74  Vkpc1_69  NET1P_41  RENTP_48  Vaiep_59  Vppc1_72  MCM1_38  CDH1i_18  Vkpf6_70  C2P_5 
Simulators: BioUML  ByoDyn  MathSBML  copasi  edu.kgi.roadRunner 
timesimulation F2P_30 Vdb5_64 Vasbf_60 IEP_34 CDC20i_13 MASS_37 SPN_53 CDC14T_9 ESP1_27 PE_45 Vicdh_67 Vd2f6_62 PDS1_44 C2_4 C5_6 Visbf_68 SBF_49 SIC1_50 CDC6_14 SIC1T_52 CDC15i_11 CDC20_12 BUB2_2 TEM1T_217 F2_29 CLB2T_21 F5P_32 LTE1_35 CLB5_22 CDC6T_16 TEM1GTP_57 Vdb2_63 SIC1P_51 ORI_43 IET_104 SWI5P_55 F5_31 Vdppx_66 CDC15T_79 TEM1GDP_56 PPX_46 NET1_40 BCK2_1 MAD2_36 CDH1_17 CLN2_24 RENT_47 CLB5T_23 CLN3_25 Vd2c1_61 ESP1T_103 D_26 CDC6P_15 Vkpnet_71 Vppf6_73 CKIT_19 mu_39 F_28 CDC14_8 SWI5_54 CLB2_20 C5P_7 NET1T_42 IE_33 Vacdh_58 Vdpds_65 BUD_3 CDC15_10 Vppnet_74 Vkpc1_69 NET1P_41 RENTP_48 Vaiep_59 Vppc1_72 MCM1_38 CDH1i_18 Vkpf6_70 C2P_5
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML2,73938E-20,008,10874E-20,005,90826E-178,61,01500E-10,001,47204E00,001,20602E00,003,00000E-20,002,11788E00,003,01313E-10,007,00000E-10,005,16844E-21,31,11940E-110,92,56120E-20,002,38404E-10,007,00810E-20,001,77538E00,004,91704E-30,002,28776E-20,001,07580E-10,003,68685E-10,003,43466E-10,004,44296E-10,002,00000E-10,001,00000E00,002,36058E-10,006,72812E-10,007,91000E-50,001,00000E-10,005,18014E-20,003,86669E-10,009,00000E-10,004,41844E-10,006,41000E-30,009,09000E-40,001,00000E00,002,00000E-20,007,24000E-50,008,94619E-10,009,99999E-10,001,00000E-10,001,23179E-10,001,86450E-20,006,51250E-20,001,00000E-20,009,30499E-10,006,52511E-20,001,04954E00,001,28912E-10,006,69451E-20,009,72477E-212,81,00131E00,001,01218E20,001,54860E-20,004,87135E-11181,87338E00,007,55354E-10,007,70164E-30,004,58613E-10,004,68344E-10,009,50000E-10,001,46923E-10,006,87800E-30,002,63846E00,008,98500E-10,003,84675E-10,001,36079E-10,008,47300E-30,006,56533E-10,004,19537E-10,002,42270E-112,29,70271E-10,006,00000E-10,001,46923E-20,001,87338E00,004,69008E-10,006,95000E-20,002,66350E-110,52,40340E-20,00
0.0 ByoDyn2,73938E-20,008,10874E-20,003,30747E-144,01,01500E-10,001,47204E00,005,53096E-154,10,00000E01002,11788E00,003,01313E-10,007,00000E-10,005,10207E-21,31,00927E-19,82,56120E-20,002,38404E-10,007,00810E-20,001,77538E00,002,26163E-354,02,28776E-20,001,07580E-10,003,68685E-10,003,43466E-10,004,44296E-10,002,00000E-10,001,00000E00,002,36058E-10,006,72812E-10,007,91000E-50,001,00000E-10,005,18014E-20,003,86669E-10,009,00000E-10,004,41844E-10,006,41000E-30,009,09000E-40,001,00000E00,002,00000E-20,007,24000E-50,008,94619E-10,009,99999E-10,001,00000E-10,001,23179E-10,001,86450E-20,002,98672E-254,11,00000E-20,009,30499E-10,006,52511E-20,001,04954E00,001,28912E-10,003,37609E-249,68,62347E-211,31,00131E00,001,01218E20,001,54860E-20,002,23407E-154,11,87338E00,007,55354E-10,007,70164E-30,004,58613E-10,004,68344E-10,009,50000E-10,001,46923E-10,006,87800E-30,002,63846E00,008,98500E-10,003,84675E-10,001,36079E-10,000,00000E01006,56533E-10,004,19537E-10,002,15966E-110,99,70271E-10,006,00000E-10,001,46923E-20,001,87338E00,004,69008E-10,006,95000E-20,002,41129E-19,52,40340E-20,00
0.0 MathSBML2,73938E-20,00 - - - - 1,01500E-10,001,47204E00,001,20602E00,003,00000E-20,002,11788E00,003,01313E-10,007,00000E-10,00 - - - - 2,56120E-20,002,38404E-10,007,00810E-20,00 - - 4,91374E-30,002,28776E-20,001,07580E-10,003,68685E-10,003,43466E-10,004,44296E-10,002,00000E-10,00 - - 2,36058E-10,006,72812E-10,007,91000E-50,001,00000E-10,005,18014E-20,003,86669E-10,009,00000E-10,00 - - 6,41000E-30,009,09000E-40,00 - - 2,00000E-20,007,24000E-50,00 - - - - 1,00000E-10,001,23179E-10,001,86450E-20,006,51250E-20,001,00000E-20,009,30499E-10,006,52511E-20,001,04954E00,001,28912E-10,006,69451E-20,00 - - - - - - 1,54860E-20,00 - - - - 7,55354E-10,00 - - - - 4,68344E-10,009,50000E-10,001,46923E-10,006,87800E-30,002,63846E00,008,98500E-10,00 - - - - 8,47300E-30,006,56533E-10,00 - - - - 9,70271E-10,006,00000E-10,00 - - - - 4,69008E-10,006,95000E-20,00 - - 2,40340E-20,00
0.0 copasi2,73938E-20,00 - - - - 1,01500E-10,001,47204E00,001,20602E00,003,00000E-20,002,11788E00,003,01313E-10,007,00000E-10,00 - - - - 2,56120E-20,002,38404E-10,007,00810E-20,00 - - 4,91374E-30,002,28776E-20,001,07580E-10,003,68685E-10,003,43466E-10,004,44296E-10,002,00000E-10,00 - - 2,36058E-10,006,72813E-10,007,91000E-50,001,00000E-10,005,18014E-20,003,86669E-10,009,00000E-10,00 - - 6,41000E-30,009,09000E-40,00 - - 2,00000E-20,007,24000E-50,00 - - - - 1,00000E-10,001,23179E-10,001,86450E-20,006,51250E-20,001,00000E-20,009,30499E-10,006,52511E-20,001,04954E00,001,28912E-10,006,69451E-20,00 - - - - - - 1,54860E-20,00 - - - - 7,55354E-10,00 - - - - 4,68344E-10,009,50000E-10,001,46923E-10,006,87800E-30,002,63846E00,008,98500E-10,00 - - - - 8,47300E-30,006,56533E-10,00 - - - - 9,70271E-10,006,00000E-10,00 - - - - 4,69008E-10,006,95000E-20,00 - - 2,40340E-20,00
0.0 edu.kgi.roadRunner2,73938E-20,00 - - - - 1,01500E-10,001,47204E00,001,20602E00,003,00000E-20,002,11788E00,003,01313E-10,007,00000E-10,00 - - - - 2,56120E-20,002,38404E-10,007,00810E-20,00 - - 4,91374E-30,002,28776E-20,001,07580E-10,003,68685E-10,003,43466E-10,004,44296E-10,002,00000E-10,00 - - 2,36058E-10,006,72812E-10,007,91000E-50,001,00000E-10,005,18014E-20,003,86669E-10,009,00000E-10,00 - - 6,41000E-30,009,09000E-40,00 - - 2,00000E-20,007,24000E-50,00 - - - - 1,00000E-10,001,23179E-10,001,86450E-20,006,51250E-20,001,00000E-20,009,30499E-10,006,52511E-20,001,04954E00,001,28912E-10,006,69451E-20,00 - - - - - - 1,54860E-20,00 - - - - 7,55354E-10,00 - - - - 4,68344E-10,009,50000E-10,001,46923E-10,006,87800E-30,002,63846E00,008,98500E-10,00 - - - - 8,47300E-30,006,56533E-10,00 - - - - 9,70271E-10,006,00000E-10,00 - - - - 4,69008E-10,006,95000E-20,00 - - 2,40340E-20,00
0.2 BioUML2,19613E-22,37,98541E-20,005,83890E-181,58,91123E-20,001,36815E02,21,20602E00,002,96422E-20,002,07595E01,93,17200E-10,656,84113E-10,304,29125E-29,58,89062E-223,32,20109E-23,52,36195E-13,57,63206E-24,31,45272E05,86,61414E-30,001,76752E-243,21,11921E-117,93,61790E-16,53,47571E-10,004,36588E-10,002,00000E-10,001,00000E00,002,30552E-11,56,15009E-10,194,64508E-51,11,00000E-10,004,42226E-27,63,78753E-16,88,74642E-10,004,55647E-10,255,72592E-30,838,98157E-497,71,00000E00,001,72796E-20,441,00611E-41,49,26755E-11,09,99999E-10,001,25358E-10,001,02570E-115,31,55163E-26,46,51250E-20,001,00000E-20,009,67897E-10,296,37037E-20,001,06250E02,11,26853E-10,006,69451E-20,007,82472E-225,31,00131E00,001,01218E20,001,41715E-20,004,84165E-11181,97424E01,67,40543E-16,67,70164E-30,004,58613E-10,004,93559E-11,69,37324E-10,561,06590E-18,86,16301E-31,92,62267E00,639,10888E-10,004,04847E-11,61,36034E-10,128,37193E-30,006,52428E-10,003,57711E-113,42,00017E-130,81,02477E00,715,19883E-10,001,06590E-210,31,97424E01,61,73171E-122,83,01039E-22,82,17360E-129,41,97110E-22,0
0.2 ByoDyn2,06408E-20,007,98952E-20,003,21705E-144,98,90453E-20,001,39962E00,005,53949E-10,009,17543E-30,002,11555E00,003,15143E-10,006,86170E-10,003,91959E-28,77,21151E-218,92,28167E-20,002,45648E-10,008,00856E-20,001,37318E05,53,01999E-30,003,13456E-20,001,37046E-10,003,87075E-10,003,47570E-10,004,36845E-10,002,00000E-10,001,00000E00,002,34764E-10,006,16154E-10,004,57219E-50,001,00000E-10,004,09400E-20,004,06442E-10,008,74642E-10,004,56809E-10,255,77372E-30,003,82322E-20,001,00000E00,001,72039E-20,001,02270E-40,009,17375E-11,09,99999E-10,001,25358E-10,001,21040E-10,001,74008E-20,002,99133E-20,001,00000E-20,009,70705E-10,006,37467E-20,001,13836E00,001,26942E-10,003,38086E-20,006,24503E-220,21,00131E00,001,01218E20,001,38429E-20,002,22387E-154,12,00623E01,67,93516E-10,007,70164E-30,004,58613E-10,005,01557E-10,009,42576E-10,009,66478E-20,005,76857E-30,002,63942E00,009,10955E-10,004,11246E-11,61,36197E-10,122,55462E-30,006,52429E-10,004,13119E-115,51,52882E-123,61,00803E00,004,75636E-10,009,66478E-39,32,00623E01,61,36650E-10,002,92939E-20,001,67994E-122,71,84531E-20,00
0.2 MathSBML2,06408E-20,00 - - - - 8,90453E-20,001,39962E00,005,53949E-10,009,17543E-30,002,11555E00,003,15143E-10,006,86170E-10,00 - - - - 2,28167E-20,002,45648E-10,008,00856E-20,00 - - 3,01999E-30,003,13456E-20,001,37046E-10,003,87075E-10,003,47570E-10,004,36845E-10,002,00000E-10,00 - - 2,34764E-10,006,16154E-10,004,57219E-50,001,00000E-10,004,09400E-20,004,06442E-10,008,74642E-10,00 - - 5,77372E-30,003,82322E-20,00 - - 1,72039E-20,001,02270E-40,00 - - - - 1,25358E-10,001,21040E-10,001,74008E-20,002,99133E-20,001,00000E-20,009,70705E-10,006,37467E-20,001,13836E00,001,26942E-10,003,38086E-20,00 - - - - - - 1,38429E-20,00 - - - - 7,93516E-10,00 - - - - 5,01557E-10,009,42576E-10,009,66478E-20,005,76857E-30,002,63942E00,009,10955E-10,00 - - - - 2,55462E-30,006,52429E-10,00 - - - - 1,00803E00,004,75636E-10,00 - - - - 1,36650E-10,002,92939E-20,00 - - 1,84531E-20,00
0.2 copasi2,14578E-20,00 - - - - 8,90598E-20,001,40015E00,001,20788E00,003,88534E-20,002,11555E00,003,15100E-10,006,86213E-10,00 - - - - 2,28424E-20,002,44785E-10,007,97484E-20,00 - - 7,14321E-30,003,11090E-20,001,36301E-10,003,86931E-10,003,47570E-10,004,36848E-10,002,00000E-10,00 - - 2,34083E-10,006,17628E-10,004,59492E-50,001,00000E-10,004,11042E-20,004,06301E-10,008,74642E-10,00 - - 5,90564E-30,003,93052E-20,00 - - 1,71898E-20,001,02002E-40,00 - - - - 1,25358E-10,001,21044E-10,001,65802E-20,006,52254E-20,001,00000E-20,009,70825E-10,006,39158E-20,001,08567E00,001,27051E-10,006,70310E-20,00 - - - - - - 1,43115E-20,00 - - - - 7,93233E-10,00 - - - - 5,10256E-10,009,42662E-10,009,79697E-20,006,05086E-30,002,63942E00,009,10940E-10,00 - - - - 1,09963E-20,006,52429E-10,00 - - - - 1,01755E00,005,19626E-10,00 - - - - 1,40980E-10,002,91736E-20,00 - - 1,93318E-20,00
0.2 edu.kgi.roadRunner2,14578E-20,00 - - - - 8,90598E-20,001,40015E00,001,20788E00,003,88534E-20,002,11555E00,003,15100E-10,006,86213E-10,00 - - - - 2,28424E-20,002,44785E-10,007,97485E-20,00 - - 7,14321E-30,003,11090E-20,001,36301E-10,003,86931E-10,003,47570E-10,004,36848E-10,002,00000E-10,00 - - 2,34083E-10,006,17628E-10,004,59492E-50,001,00000E-10,004,11042E-20,004,06301E-10,008,74642E-10,00 - - 5,90564E-30,003,93052E-20,00 - - 1,71898E-20,001,02002E-40,00 - - - - 1,25358E-10,001,21044E-10,001,65802E-20,006,52254E-20,001,00000E-20,009,70825E-10,006,39158E-20,001,08567E00,001,27051E-10,006,70310E-20,00 - - - - - - 1,43115E-20,00 - - - - 7,93233E-10,00 - - - - 5,10256E-10,009,42662E-10,009,79697E-20,006,05086E-30,002,63942E00,009,10940E-10,00 - - - - 1,09963E-20,006,52429E-10,00 - - - - 1,01755E00,005,19626E-10,00 - - - - 1,40980E-10,002,91736E-20,00 - - 1,93318E-20,00
0.4 BioUML1,74533E-29,57,83814E-20,145,78026E-185,17,71777E-20,401,27226E03,11,20602E00,002,92886E-20,002,03484E03,73,34342E-10,966,66971E-10,483,63867E-228,97,38383E-247,22,02608E-22,52,28265E-17,78,11904E-29,81,24389E016,18,52788E-30,002,00284E-253,81,23142E-128,73,55996E-112,43,52191E-10,004,27384E-10,172,00000E-10,001,00000E00,002,18744E-13,05,60997E-10,242,84367E-54,51,00000E-10,003,80170E-227,13,72142E-112,98,50372E-10,004,62083E-10,454,95749E-31,68,87444E-498,61,00000E00,001,47116E-21,41,18399E-42,99,36512E-10,629,99999E-10,001,49628E-10,008,51251E-228,41,48067E-210,26,51250E-20,001,00000E-20,009,87439E-10,506,21930E-20,161,05488E05,21,24861E-10,146,69451E-20,006,57896E-248,71,00131E00,001,01218E20,001,26554E-20,004,80821E-11171,99719E00,977,28138E-112,67,70164E-30,004,58613E-10,004,99297E-10,009,24740E-10,828,04868E-233,35,50704E-37,02,60698E01,39,22822E-10,004,09438E-10,941,34974E-10,258,27207E-30,006,47808E-10,003,05375E-124,91,72045E-160,91,05663E02,44,80666E-10,248,04868E-336,61,99719E00,979,35231E-263,48,56835E-313,11,84914E-160,81,60477E-27,6
0.4 ByoDyn1,48888E-20,007,84946E-20,143,12283E-146,07,68356E-20,001,31280E00,005,54803E-10,001,60653E-20,002,11326E00,003,31147E-10,006,70166E-10,002,82235E-222,45,01470E-232,12,07904E-20,002,48558E-10,009,06315E-20,001,07129E013,94,05688E-30,004,39623E-20,001,74329E-10,004,06650E-10,003,52191E-10,004,28091E-10,002,00000E-10,001,00000E00,002,26240E-10,005,62330E-10,002,70178E-50,001,00000E-10,002,95274E-20,004,27625E-10,008,50372E-10,004,64182E-10,455,03720E-30,006,40911E-20,001,00000E00,001,45024E-20,001,22166E-40,009,30767E-10,619,99999E-10,001,49628E-10,001,18857E-10,001,83500E-20,002,99594E-20,001,00000E-20,009,92422E-10,006,22928E-20,001,21256E00,001,25037E-10,003,38563E-20,004,42559E-232,71,00131E00,001,01218E20,001,20181E-20,002,21192E-154,01,97805E00,968,34275E-10,007,70164E-30,004,58613E-10,004,94512E-10,009,32431E-10,005,89109E-20,004,72869E-30,002,64038E00,009,23164E-10,004,05610E-10,931,35315E-10,254,61843E-30,006,47808E-10,004,06570E-133,11,06914E-137,91,00328E00,004,06188E-10,005,89109E-326,81,97805E00,965,50758E-20,00