Test: BIOMD0000000059.xml - Ok

test: BIOMD0000000059.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000059.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL0928773489.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: D  b_5  IP3_cyt  Vca  I_KATP  Okatp  V  I_CaPump  f_Ca  Jerp  I_Vca  I_NaK  ADP_cyt  Jout  p_CRAN  B4  I_CRAN  B3  B2  I_NaCa  Na_cyt  n_infinity  B6  I_Na  I_KCa  n  tau_n  f_CRAN  Vk  Ca_er  F1  pvca  F5  Vna  F4  f_5  ATP_cyt  I_KDr  Vnaca  O_infinity  pna  Ca_cyt 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation D b_5 IP3_cyt Vca I_KATP Okatp V I_CaPump f_Ca Jerp I_Vca I_NaK ADP_cyt Jout p_CRAN B4 I_CRAN B3 B2 I_NaCa Na_cyt n_infinity B6 I_Na I_KCa n tau_n f_CRAN Vk Ca_er F1 pvca F5 Vna F4 f_5 ATP_cyt I_KDr Vnaca O_infinity pna Ca_cyt
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML3,53293E20,009,37252E-20,003,30000E-10,001,38039E20,004,46921E30,001,31931E-20,00-6,09000E10,008,38897E20,003,42972E-10,002,94927E-30,00-1,83865E30,001,51193E30,003,06790E30,002,28717E-150,00-6,09000E10,009,90000E-10,00-5,61967E30,004,71968E-20,003,06790E-10,001,21834E-20,009,85800E30,001,22940E-30,001,35721E40,00-7,20167E20,006,29324E20,001,23000E-30,001,15184E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20030E-20,005,96702E-10,007,09243E10,009,60000E-10,006,40170E-40,009,32100E20,005,20832E10,00-6,33045E10,005,74804E-40,004,55257E-30,008,50000E-20,00
0.0 ByoDyn3,53293E20,009,37252E-20,003,30000E-10,001,38039E20,004,46921E30,001,31931E-20,00-6,09000E10,008,38897E20,003,42972E-10,002,94927E-30,00-1,83865E30,001,51193E30,003,06790E30,002,28717E-150,00-6,09000E10,009,90000E-10,00-5,61967E30,004,71968E-20,003,06790E-10,001,21835E-20,009,85800E30,001,22940E-30,001,35721E40,00-7,20167E20,006,29324E20,001,23000E-30,001,15184E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20030E-20,005,96702E-10,007,09243E10,009,60000E-10,006,40170E-40,009,32100E20,005,20832E10,00-6,33045E10,005,74804E-40,004,55257E-30,008,50000E-20,00
0.0 MathSBML - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06790E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32100E20,00 - - - - - - - - 8,50000E-20,00
0.0 SBToolbox23,53290E20,009,37250E-20,003,30000E-10,001,38040E20,004,46920E30,001,31930E-20,00-6,09000E10,008,38900E20,003,42970E-10,002,94930E-30,00-1,83860E30,001,51190E30,003,06790E30,002,28720E-150,00-6,09000E10,009,90000E-10,00-5,61970E30,004,71970E-20,003,06790E-10,001,21830E-20,009,85800E30,001,22940E-30,001,35720E40,00-7,20170E20,006,29320E20,001,23000E-30,001,15180E10,00-7,00000E-10,00-7,50150E10,002,28000E10,002,39500E20,001,20030E-20,005,96700E-10,007,09240E10,009,60000E-10,006,40170E-40,009,32100E20,005,20830E10,00-6,33040E10,005,74800E-40,004,55260E-30,008,50000E-20,00
0.0 SBWOdeSolver - - - - 3,30000E-10,00 - - - - - - -6,09000E10,00 - - - - - - - - - - - - - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - 1,23000E-30,00 - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32100E20,00 - - - - - - - - 8,50000E-20,00
0.0 copasi - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06790E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32100E20,00 - - - - - - - - 8,50000E-20,00
0.0 edu.kgi.roadRunner - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06790E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32100E20,00 - - - - - - - - 8,50000E-20,00
0.0 jsim3,53293E20,009,37252E-20,003,30000E-10,001,38039E20,004,46921E30,001,31931E-20,00-6,09000E10,008,38897E20,003,42972E-10,002,94927E-30,00-1,83865E30,001,51193E30,003,06790E30,002,28717E-150,00-6,09000E10,009,90000E-10,00-5,61967E30,004,71968E-20,003,06790E-10,001,21835E-20,009,85800E30,001,22940E-30,001,35721E40,00-7,20167E20,006,29324E20,001,23000E-30,001,15184E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20030E-20,005,96702E-10,007,09243E10,009,60000E-10,006,40170E-40,009,32100E20,005,20832E10,00-6,33045E10,005,74804E-40,004,55257E-30,008,50000E-20,00
0.2 BioUML3,53491E20,009,36870E-20,003,30000E-10,001,38039E20,004,47543E30,001,31911E-20,00-6,08782E10,008,38904E20,003,42979E-10,002,94931E-30,00-1,84262E30,001,51548E30,003,06769E30,002,28717E-150,00-6,08782E10,009,90000E-10,00-5,61673E30,004,71968E-20,003,06769E-10,001,22936E-20,009,85800E30,001,23323E-30,001,35721E40,00-7,18098E20,006,30307E20,001,23002E-30,001,15192E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20302E-20,005,97080E-10,007,09243E10,009,60000E-10,006,40431E-40,009,32310E20,005,21646E10,00-6,33043E10,005,74806E-40,004,54024E-30,008,50006E-20,00
0.2 ByoDyn3,53491E20,009,36870E-20,003,30000E-10,001,38039E20,004,47543E30,001,31911E-20,00-6,08782E10,008,38904E20,003,42979E-10,002,94931E-30,00-1,84262E30,001,51548E30,003,06769E30,002,28717E-150,00-6,08782E10,009,90000E-10,00-5,61673E30,004,71968E-20,003,06769E-10,001,22936E-20,009,85800E30,001,23323E-30,001,35721E40,00-7,18098E20,006,30307E20,001,23002E-30,001,15192E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20302E-20,005,97080E-10,007,09243E10,009,60000E-10,006,40431E-40,009,32310E20,005,21646E10,00-6,33043E10,005,74806E-40,004,54024E-30,008,50006E-20,00
0.2 MathSBML - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06769E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32310E20,00 - - - - - - - - 8,50006E-20,00
0.2 SBToolbox23,53490E20,009,36870E-20,003,30000E-10,001,38040E20,004,47539E30,001,31910E-20,00-6,08780E10,008,38900E20,003,42980E-10,002,94930E-30,00-1,84260E30,001,51550E30,003,06770E30,002,28720E-150,00-6,08780E10,009,90000E-10,00-5,61670E30,004,71970E-20,003,06770E-10,001,22939E-20,009,85800E30,001,23320E-30,001,35720E40,00-7,18102E20,006,30309E20,001,23000E-30,001,15190E10,00-7,00000E-10,00-7,50150E10,002,28000E10,002,39500E20,001,20300E-20,005,97080E-10,007,09240E10,009,60000E-10,006,40430E-40,009,32310E20,005,21649E10,00-6,33040E10,005,74810E-40,004,54021E-30,008,50010E-20,00
0.2 SBWOdeSolver - - - - 3,30000E-10,00 - - - - - - -6,08782E10,00 - - - - - - - - - - - - - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - 1,23002E-30,00 - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32310E20,00 - - - - - - - - 8,50006E-20,00
0.2 copasi - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06769E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32310E20,00 - - - - - - - - 8,50006E-20,00
0.2 edu.kgi.roadRunner - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06769E30,00 - - - - - - - - - - - - - - 9,85800E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32310E20,00 - - - - - - - - 8,50006E-20,00
0.2 jsim3,53491E20,009,36870E-20,003,30000E-10,001,38039E20,004,47543E30,001,31911E-20,00-6,08782E10,008,38904E20,003,42979E-10,002,94931E-30,00-1,84262E30,001,51548E30,003,06769E30,002,28717E-150,00-6,08782E10,009,90000E-10,00-5,61673E30,004,71968E-20,003,06769E-10,001,22936E-20,009,85800E30,001,23323E-30,001,35721E40,00-7,18098E20,006,30307E20,001,23002E-30,001,15192E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20302E-20,005,97080E-10,007,09243E10,009,60000E-10,006,40431E-40,009,32310E20,005,21646E10,00-6,33043E10,005,74806E-40,004,54024E-30,008,50006E-20,00
0.4 BioUML3,53686E20,009,36495E-20,003,30000E-10,001,38038E20,004,48152E30,001,31891E-20,00-6,08568E10,008,38911E20,003,42986E-10,002,94935E-30,00-1,84652E30,001,51898E30,003,06748E30,002,28717E-150,00-6,08568E10,009,90000E-10,00-5,61384E30,004,71968E-20,003,06748E-10,001,24018E-20,009,85801E30,001,23700E-30,001,35721E40,00-7,16071E20,006,31275E20,001,23011E-30,001,15200E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20570E-20,005,97454E-10,007,09243E10,009,60000E-10,006,40687E-40,009,32520E20,005,22474E10,00-6,33042E10,005,74807E-40,004,52816E-30,008,50012E-20,00
0.4 ByoDyn3,53686E20,009,36495E-20,003,30000E-10,001,38038E20,004,48152E30,001,31891E-20,00-6,08568E10,008,38911E20,003,42986E-10,002,94935E-30,00-1,84652E30,001,51898E30,003,06748E30,002,28717E-150,00-6,08568E10,009,90000E-10,00-5,61384E30,004,71968E-20,003,06748E-10,001,24017E-20,009,85801E30,001,23700E-30,001,35721E40,00-7,16071E20,006,31275E20,001,23011E-30,001,15200E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20570E-20,005,97454E-10,007,09243E10,009,60000E-10,006,40687E-40,009,32520E20,005,22474E10,00-6,33042E10,005,74807E-40,004,52816E-30,008,50012E-20,00
0.4 MathSBML - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06748E30,00 - - - - - - - - - - - - - - 9,85801E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32520E20,00 - - - - - - - - 8,50012E-20,00
0.4 SBToolbox23,53690E20,009,36491E-20,003,30000E-10,001,38040E20,004,48149E30,001,31890E-20,00-6,08570E10,008,38910E20,003,42990E-10,002,94940E-30,00-1,84649E30,001,51899E30,003,06750E30,002,28720E-150,00-6,08570E10,009,90000E-10,00-5,61381E30,004,71970E-20,003,06750E-10,001,24018E-20,009,85800E30,001,23699E-30,001,35720E40,00-7,16074E20,006,31278E20,001,23010E-30,001,15200E10,00-7,00000E-10,00-7,50150E10,002,28000E10,002,39500E20,001,20570E-20,005,97450E-10,007,09240E10,009,60000E-10,006,40689E-40,009,32520E20,005,22478E10,00-6,33040E10,005,74810E-40,004,52812E-30,008,50010E-20,00
0.4 SBWOdeSolver - - - - 3,30000E-10,00 - - - - - - -6,08568E10,00 - - - - - - - - - - - - - - - - - - - - - - - - - - 9,85801E30,00 - - - - - - - - 1,23011E-30,00 - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32520E20,00 - - - - - - - - 8,50012E-20,00
0.4 copasi - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06748E30,00 - - - - - - - - - - - - - - 9,85801E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32520E20,00 - - - - - - - - 8,50012E-20,00
0.4 edu.kgi.roadRunner - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06748E30,00 - - - - - - - - - - - - - - 9,85801E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32520E20,00 - - - - - - - - 8,50012E-20,00
0.4 jsim3,53686E20,009,36495E-20,003,30000E-10,001,38038E20,004,48152E30,001,31891E-20,00-6,08568E10,008,38911E20,003,42986E-10,002,94935E-30,00-1,84652E30,001,51898E30,003,06748E30,002,28717E-150,00-6,08568E10,009,90000E-10,00-5,61384E30,004,71968E-20,003,06748E-10,001,24017E-20,009,85801E30,001,23700E-30,001,35721E40,00-7,16071E20,006,31275E20,001,23011E-30,001,15200E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39501E20,001,20570E-20,005,97454E-10,007,09243E10,009,60000E-10,006,40687E-40,009,32520E20,005,22474E10,00-6,33042E10,005,74807E-40,004,52816E-30,008,50012E-20,00
0.6 BioUML3,53879E20,009,36126E-20,003,30000E-10,001,38038E20,004,48750E30,001,31871E-20,00-6,08358E10,008,38919E20,003,42993E-10,002,94940E-30,00-1,85037E30,001,52244E30,003,06727E30,002,28717E-150,00-6,08358E10,009,90000E-10,00-5,61100E30,004,71968E-20,003,06727E-10,001,25080E-20,009,85801E30,001,24072E-30,001,35721E40,00-7,14085E20,006,32227E20,001,23026E-30,001,15207E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39502E20,001,20834E-20,005,97824E-10,007,09242E10,009,60000E-10,006,40939E-40,009,32731E20,005,23314E10,00-6,33040E10,005,74810E-40,004,51632E-30,008,50020E-20,00
0.6 ByoDyn3,53879E20,009,36126E-20,003,30000E-10,001,38038E20,004,48750E30,001,31871E-20,00-6,08358E10,008,38919E20,003,42993E-10,002,94940E-30,00-1,85037E30,001,52244E30,003,06727E30,002,28717E-150,00-6,08358E10,009,90000E-10,00-5,61100E30,004,71968E-20,003,06727E-10,001,25079E-20,009,85801E30,001,24072E-30,001,35721E40,00-7,14085E20,006,32227E20,001,23026E-30,001,15207E10,00-7,00000E-10,00-7,50147E10,002,28000E10,002,39502E20,001,20834E-20,005,97824E-10,007,09242E10,009,60000E-10,006,40939E-40,009,32731E20,005,23314E10,00-6,33040E10,005,74810E-40,004,51632E-30,008,50020E-20,00
0.6 MathSBML - - - - 3,30000E-10,00 - - - - - - - - - - - - - - - - - - 3,06727E30,00 - - - - - - - - - - - - - - 9,85801E30,00 - - - - - - - - - - - - - - - - 2,28000E10,00 - - - - - - - - - - - - 9,32731E20,00 - - - - - - - - 8,50020E-20,00
0.6 SBToolbox23,53879E20,00