Test: BIOMD0000000066.xml - Ok

test: BIOMD0000000066.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000066.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6624131052.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: adp  hs  thr  aspp  atp  hsp  nadph  nadp  asp  asa  phos 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation adp hs thr aspp atp hsp nadph nadp asp asa phos
var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core0,00000E00,000,00000E00,002,00000E00,00 - - - - 0,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,000,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 VCell0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,00-4,54747E-161000,00000E00,00
0.0 copasi0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.0 jsim0,00000E00,000,00000E00,002,00000E00,000,00000E00,001,00000E10,000,00000E00,002,00000E00,000,00000E00,002,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 ByoDyn7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 Jarnac7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 MathSBML7,62718E-30,001,30211E-40,002,00000E00,003,15950E-30,009,99237E00,006,50511E-70,001,99662E00,003,37752E-30,001,99403E00,002,67976E-30,004,46703E-30,00
0.2 Oscill8 Core7,62718E-30,001,30222E-40,002,00000E00,00 - - - - 6,50688E-70,00 - - 3,37758E-30,00 - - 2,67979E-30,004,46709E-30,00
0.2 SBToolbox27,62723E-30,001,30394E-40,132,00000E00,003,16114E-30,009,99241E00,006,57751E-71,11,99661E00,003,37618E-30,001,99401E00,002,67798E-30,004,46549E-30,00
0.2 SBWOdeSolver7,62718E-30,001,30222E-40,002,00000E00,003,15946E-30,009,99237E00,006,50656E-70,001,99662E00,003,37757E-30,001,99403E00,002,67978E-30,004,46706E-30,00
0.2 VCell7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 copasi7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 edu.kgi.roadRunner7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.2 jsim7,62718E-30,001,30210E-40,002,00000E00,003,15951E-30,009,99237E00,006,50502E-70,001,99662E00,003,37752E-30,001,99403E00,002,67975E-30,004,46702E-30,00
0.4 BioUML1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 ByoDyn1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 Jarnac1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 MathSBML1,51645E-20,007,28902E-40,002,00000E00,004,08626E-30,009,98484E00,007,66259E-60,001,99063E00,009,36532E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 Oscill8 Core1,51645E-20,007,28925E-40,002,00000E00,00 - - - - 7,66334E-60,00 - - 9,36535E-30,00 - - 7,02100E-30,001,10706E-20,00
0.4 SBToolbox21,51650E-20,007,29052E-40,002,00000E00,004,08859E-30,009,98482E00,007,70333E-60,521,99062E00,009,36333E-30,001,98811E00,007,01864E-30,001,10681E-20,00
0.4 SBWOdeSolver1,51645E-20,007,28926E-40,002,00000E00,004,08627E-30,009,98484E00,007,66331E-60,001,99063E00,009,36533E-30,001,98816E00,007,02102E-30,001,10706E-20,00
0.4 VCell1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 copasi1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36532E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 edu.kgi.roadRunner1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.4 jsim1,51645E-20,007,28901E-40,002,00000E00,004,08627E-30,009,98484E00,007,66256E-60,001,99063E00,009,36531E-30,001,98816E00,007,02101E-30,001,10706E-20,00
0.6 BioUML2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 ByoDyn2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 Jarnac2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 MathSBML2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 Oscill8 Core2,26646E-20,001,83986E-30,002,00000E00,00 - - - - 3,00744E-50,00 - - 1,63745E-20,00 - - 1,13290E-20,001,81693E-20,00
0.6 SBToolbox22,26645E-20,001,83968E-30,002,00000E00,004,46730E-30,009,97732E00,003,01793E-50,351,98362E00,001,63729E-20,001,98232E00,001,13275E-20,001,81674E-20,00
0.6 SBWOdeSolver2,26646E-20,001,83986E-30,002,00000E00,004,46519E-30,009,97734E00,003,00744E-50,001,98363E00,001,63746E-20,001,98234E00,001,13291E-20,001,81693E-20,00
0.6 VCell2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 copasi2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 edu.kgi.roadRunner2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.6 jsim2,26646E-20,001,83983E-30,002,00000E00,004,46523E-30,009,97734E00,003,00727E-50,001,98363E00,001,63745E-20,001,98234E00,001,13290E-20,001,81693E-20,00
0.8 BioUML3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 ByoDyn3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 Jarnac3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 MathSBML3,01482E-20,003,40615E-30,002,00000E00,004,67545E-30,009,96985E00,007,62492E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 Oscill8 Core3,01482E-20,003,40618E-30,002,00000E00,00 - - - - 7,62519E-50,00 - - 2,39897E-20,00 - - 1,52844E-20,002,53965E-20,00
0.8 SBToolbox23,01490E-20,003,40496E-30,002,00000E00,004,67731E-30,009,96983E00,007,65063E-50,331,97603E00,002,39876E-20,001,97652E00,001,52839E-20,002,53950E-20,00
0.8 SBWOdeSolver3,01482E-20,003,40618E-30,002,00000E00,004,67543E-30,009,96985E00,007,62519E-50,001,97601E00,002,39898E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 VCell3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 copasi3,01482E-20,003,40615E-30,002,00000E00,004,67545E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 edu.kgi.roadRunner3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
0.8 jsim3,01482E-20,003,40615E-30,002,00000E00,004,67546E-30,009,96985E00,007,62491E-50,001,97601E00,002,39897E-20,001,97656E00,001,52845E-20,002,53965E-20,00
1.0 BioUML3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 ByoDyn3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 Jarnac3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 MathSBML3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 Oscill8 Core3,76267E-20,005,35937E-30,002,00001E00,00 - - - - 1,53096E-40,00 - - 3,20487E-20,00 - - 1,88468E-20,003,26516E-20,00
1.0 SBToolbox23,76276E-20,005,35693E-30,002,00000E00,004,82336E-30,009,96234E00,001,53521E-40,281,96794E00,003,20458E-20,001,97083E00,001,88480E-20,003,26507E-20,00
1.0 SBWOdeSolver3,76267E-20,005,35938E-30,002,00001E00,004,82203E-30,009,96237E00,001,53096E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 VCell3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 copasi3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 edu.kgi.roadRunner3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20487E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.0 jsim3,76267E-20,005,35934E-30,002,00001E00,004,82204E-30,009,96237E00,001,53092E-40,001,96795E00,003,20486E-20,001,97081E00,001,88469E-20,003,26516E-20,00
1.2 BioUML4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 ByoDyn4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 Jarnac4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 MathSBML4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 Oscill8 Core4,51078E-20,007,63682E-30,002,00001E00,00 - - - - 2,66064E-40,00 - - 4,04636E-20,00 - - 2,20410E-20,003,99041E-20,00
1.2 SBToolbox24,51090E-20,007,63362E-30,002,00000E00,004,93858E-30,009,95485E00,002,66616E-40,211,95955E00,004,04605E-20,001,96514E00,002,20428E-20,003,99034E-20,00
1.2 SBWOdeSolver4,51079E-20,007,63683E-30,002,00001E00,004,93771E-30,009,95489E00,002,66064E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 VCell4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 copasi4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 edu.kgi.roadRunner4,51078E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.2 jsim4,51079E-20,007,63679E-30,002,00001E00,004,93772E-30,009,95489E00,002,66059E-40,001,95954E00,004,04636E-20,001,96511E00,002,20410E-20,003,99041E-20,00
1.4 BioUML5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 ByoDyn5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 Jarnac5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 MathSBML5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19345E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 Oscill8 Core5,25975E-20,001,01845E-20,002,00002E00,00 - - - - 4,19351E-40,00 - - 4,91747E-20,00 - - 2,49046E-20,004,71441E-20,00
1.4 SBToolbox25,25985E-20,001,01802E-20,002,00000E00,005,03468E-30,009,94736E00,004,20053E-40,171,95086E00,004,91710E-20,001,95944E00,002,49080E-20,004,71443E-20,00
1.4 SBWOdeSolver5,25975E-20,001,01845E-20,002,00002E00,005,03401E-30,009,94740E00,004,19351E-40,001,95083E00,004,91748E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 VCell5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 copasi5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19345E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 edu.kgi.roadRunner5,25974E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.4 jsim5,25975E-20,001,01845E-20,002,00002E00,005,03402E-30,009,94740E00,004,19344E-40,001,95083E00,004,91747E-20,001,95944E00,002,49047E-20,004,71441E-20,00
1.6 BioUML6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 ByoDyn6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 Jarnac6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 MathSBML6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 Oscill8 Core6,01001E-20,001,29565E-20,002,00003E00,00 - - - - 6,16085E-40,00 - - 5,81358E-20,00 - - 2,74749E-20,005,43682E-20,00
1.6 SBToolbox26,01018E-20,001,29481E-20,002,00000E00,005,11649E-30,009,93986E00,006,17010E-40,151,94188E00,005,81284E-20,001,95383E00,002,74815E-20,005,43682E-20,00
1.6 SBWOdeSolver6,01001E-20,001,29565E-20,002,00003E00,005,11579E-30,009,93990E00,006,16086E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 VCell6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 copasi6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 edu.kgi.roadRunner6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-20,00
1.6 jsim6,01001E-20,001,29564E-20,002,00003E00,005,11579E-30,009,93990E00,006,16078E-40,001,94186E00,005,81358E-20,001,95380E00,002,74750E-20,005,43682E-2