Test: BIOMD0000000068.xml - Ok


test: BIOMD0000000068.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000068.gif


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Phser 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation Phser
var error
0.0 BioUML0,00000E00,00
0.0 ByoDyn0,00000E00,00
0.0 Jarnac0,00000E00,00
0.0 MathSBML0,00000E00,00
0.0 Oscill8 Core0,00000E00,00
0.0 SBToolbox20,00000E00,00
0.0 SBWOdeSolver0,00000E00,00
0.0 VCell0,00000E00,00
0.0 copasi0,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,00
0.2 BioUML1,99852E-10,00
0.2 ByoDyn1,99852E-10,00
0.2 Jarnac1,99852E-10,00
0.2 MathSBML1,99852E-10,00
0.2 Oscill8 Core1,99852E-10,00
0.2 SBToolbox21,99850E-10,00
0.2 SBWOdeSolver1,99852E-10,00
0.2 VCell1,99852E-10,00
0.2 copasi1,99852E-10,00
0.2 edu.kgi.roadRunner1,99852E-10,00
0.4 BioUML3,99408E-10,00
0.4 ByoDyn3,99408E-10,00
0.4 Jarnac3,99408E-10,00
0.4 MathSBML3,99408E-10,00
0.4 Oscill8 Core3,99408E-10,00
0.4 SBToolbox23,99411E-10,00
0.4 SBWOdeSolver3,99408E-10,00
0.4 VCell3,99408E-10,00
0.4 copasi3,99408E-10,00
0.4 edu.kgi.roadRunner3,99408E-10,00
0.6 BioUML5,98668E-10,00
0.6 ByoDyn5,98668E-10,00
0.6 Jarnac5,98668E-10,00
0.6 MathSBML5,98668E-10,00
0.6 Oscill8 Core5,98668E-10,00
0.6 SBToolbox25,98672E-10,00
0.6 SBWOdeSolver5,98668E-10,00
0.6 VCell5,98668E-10,00
0.6 copasi5,98668E-10,00
0.6 edu.kgi.roadRunner5,98668E-10,00
0.8 BioUML7,97634E-10,00
0.8 ByoDyn7,97634E-10,00
0.8 Jarnac7,97634E-10,00
0.8 MathSBML7,97634E-10,00
0.8 Oscill8 Core7,97634E-10,00
0.8 SBToolbox27,97635E-10,00
0.8 SBWOdeSolver7,97634E-10,00
0.8 VCell7,97634E-10,00
0.8 copasi7,97634E-10,00
0.8 edu.kgi.roadRunner7,97634E-10,00
1.0 BioUML9,96305E-10,00
1.0 ByoDyn9,96305E-10,00
1.0 Jarnac9,96305E-10,00
1.0 MathSBML9,96305E-10,00
1.0 Oscill8 Core9,96305E-10,00
1.0 SBToolbox29,96307E-10,00
1.0 SBWOdeSolver9,96305E-10,00
1.0 VCell9,96305E-10,00
1.0 copasi9,96305E-10,00
1.0 edu.kgi.roadRunner9,96305E-10,00
1.2 BioUML1,19468E00,00
1.2 ByoDyn1,19468E00,00
1.2 Jarnac1,19468E00,00
1.2 MathSBML1,19468E00,00
1.2 Oscill8 Core1,19468E00,00
1.2 SBToolbox21,19471E00,00
1.2 SBWOdeSolver1,19468E00,00
1.2 VCell1,19468E00,00
1.2 copasi1,19468E00,00
1.2 edu.kgi.roadRunner1,19468E00,00
1.4 BioUML1,39277E00,00
1.4 ByoDyn1,39277E00,00
1.4 Jarnac1,39277E00,00
1.4 MathSBML1,39277E00,00
1.4 Oscill8 Core1,39277E00,00
1.4 SBToolbox21,39280E00,00
1.4 SBWOdeSolver1,39277E00,00
1.4 VCell1,39277E00,00
1.4 copasi1,39277E00,00
1.4 edu.kgi.roadRunner1,39277E00,00
1.6 BioUML1,59056E00,00
1.6 ByoDyn1,59056E00,00
1.6 Jarnac1,59056E00,00
1.6 MathSBML1,59056E00,00
1.6 Oscill8 Core1,59056E00,00
1.6 SBToolbox21,59052E00,00
1.6 SBWOdeSolver1,59056E00,00
1.6 VCell1,59056E00,00
1.6 copasi1,59056E00,00
1.6 edu.kgi.roadRunner1,59056E00,00
1.8 BioUML1,78805E00,00
1.8 ByoDyn1,78805E00,00
1.8 Jarnac1,78805E00,00
1.8 MathSBML1,78805E00,00
1.8 Oscill8 Core1,78805E00,00
1.8 SBToolbox21,78804E00,00
1.8 SBWOdeSolver1,78805E00,00
1.8 VCell1,78805E00,00
1.8 copasi1,78805E00,00
1.8 edu.kgi.roadRunner1,78805E00,00
2.0 BioUML1,98526E00,00
2.0 ByoDyn1,98526E00,00
2.0 Jarnac1,98526E00,00
2.0 MathSBML1,98526E00,00
2.0 Oscill8 Core1,98526E00,00
2.0 SBToolbox21,98524E00,00
2.0 SBWOdeSolver1,98526E00,00
2.0 VCell1,98526E00,00
2.0 copasi1,98526E00,00
2.0 edu.kgi.roadRunner1,98526E00,00
2.2 BioUML2,18217E00,00
2.2 ByoDyn2,18217E00,00
2.2 Jarnac2,18217E00,00
2.2 MathSBML2,18217E00,00
2.2 Oscill8 Core2,18217E00,00
2.2 SBToolbox22,18214E00,00
2.2 SBWOdeSolver2,18217E00,00
2.2 VCell2,18217E00,00
2.2 copasi2,18217E00,00
2.2 edu.kgi.roadRunner2,18217E00,00
2.4 BioUML2,37880E00,00
2.4 ByoDyn2,37880E00,00
2.4 Jarnac2,37880E00,00
2.4 MathSBML2,37880E00,00
2.4 Oscill8 Core2,37880E00,00
2.4 SBToolbox22,37882E00,00
2.4 SBWOdeSolver2,37880E00,00
2.4 VCell2,37880E00,00
2.4 copasi2,37880E00,00
2.4 edu.kgi.roadRunner2,37880E00,00
2.6 BioUML2,57513E00,00
2.6 ByoDyn2,57513E00,00
2.6 Jarnac2,57513E00,00
2.6 MathSBML2,57513E00,00
2.6 Oscill8 Core2,57513E00,00
2.6 SBToolbox22,57515E00,00
2.6 SBWOdeSolver2,57513E00,00
2.6 VCell2,57513E00,00
2.6 copasi2,57513E00,00
2.6 edu.kgi.roadRunner2,57513E00,00
2.8 BioUML2,77117E00,00
2.8 ByoDyn2,77117E00,00
2.8 Jarnac2,77117E00,00
2.8 MathSBML2,77117E00,00
2.8 Oscill8 Core2,77117E00,00
2.8 SBToolbox22,77116E00,00
2.8 SBWOdeSolver2,77117E00,00
2.8 VCell2,77117E00,00
2.8 copasi2,77117E00,00
2.8 edu.kgi.roadRunner2,77117E00,00
3.0 BioUML2,96693E00,00
3.0 ByoDyn2,96693E00,00
3.0 Jarnac2,96693E00,00
3.0 MathSBML2,96693E00,00
3.0 Oscill8 Core2,96693E00,00
3.0 SBToolbox22,96696E00,00
3.0 SBWOdeSolver2,96693E00,00
3.0 VCell2,96693E00,00
3.0 copasi2,96693E00,00
3.0 edu.kgi.roadRunner2,96693E00,00
3.2 BioUML3,16239E00,00
3.2 ByoDyn3,16239E00,00
3.2 Jarnac3,16239E00,00
3.2 MathSBML3,16239E00,00
3.2 Oscill8 Core3,16239E00,00
3.2 SBToolbox23,16236E00,00
3.2 SBWOdeSolver3,16239E00,00
3.2 VCell3,16239E00,00
3.2 copasi3,16239E00,00
3.2 edu.kgi.roadRunner3,16239E00,00
3.4 BioUML3,35756E00,00
3.4 ByoDyn3,35756E00,00
3.4 Jarnac3,35756E00,00
3.4 MathSBML3,35756E00,00
3.4 Oscill8 Core3,35756E00,00
3.4 SBToolbox23,35757E00,00
3.4 SBWOdeSolver3,35756E00,00
3.4 VCell3,35756E00,00
3.4 copasi3,35756E00,00
3.4 edu.kgi.roadRunner3,35756E00,00
3.6 BioUML3,55245E00,00
3.6 ByoDyn3,55245E00,00
3.6 Jarnac3,55245E00,00
3.6 MathSBML3,55245E00,00
3.6 Oscill8 Core3,55245E00,00
3.6 SBToolbox23,55247E00,00
3.6 SBWOdeSolver3,55245E00,00
3.6 VCell3,55245E00,00
3.6 copasi3,55245E00,00
3.6 edu.kgi.roadRunner3,55245E00,00
3.8 BioUML3,74705E00,00
3.8 ByoDyn3,74705E00,00
3.8 Jarnac3,74705E00,00
3.8 MathSBML3,74705E00,00
3.8 Oscill8 Core3,74705E00,00
3.8 SBToolbox23,74708E00,00
3.8 SBWOdeSolver3,74705E00,00
3.8 VCell3,74705E00,00
3.8 copasi3,74705E00,00
3.8 edu.kgi.roadRunner3,74705E00,00
4.0 BioUML3,94136E00,00
4.0 ByoDyn3,94136E00,00
4.0 Jarnac3,94136E00,00
4.0 MathSBML3,94136E00,00
4.0 Oscill8 Core3,94136E00,00
4.0 SBToolbox23,94138E00,00
4.0 SBWOdeSolver3,94136E00,00
4.0 VCell3,94136E00,00
4.0 copasi3,94136E00,00
4.0 edu.kgi.roadRunner3,94136E00,00
4.2 BioUML4,13538E00,00
4.2 ByoDyn4,13538E00,00
4.2 Jarnac4,13538E00,00
4.2 MathSBML4,13538E00,00
4.2 Oscill8 Core4,13538E00,00
4.2 SBToolbox24,13543E00,00
4.2 SBWOdeSolver4,13538E00,00
4.2 VCell4,13538E00,00
4.2 copasi4,13538E00,00
4.2 edu.kgi.roadRunner4,13538E00,00
4.4 BioUML4,32912E00,00
4.4 ByoDyn4,32912E00,00
4.4 Jarnac4,32912E00,00
4.4 MathSBML4,32912E00,00
4.4 Oscill8 Core4,32912E00,00
4.4 SBToolbox24,32913E00,00
4.4 SBWOdeSolver4,32912E00,00
4.4 VCell4,32912E00,00
4.4 copasi4,32912E00,00
4.4 edu.kgi.roadRunner4,32912E00,00
4.6 BioUML4,52257E00,00
4.6 ByoDyn4,52257E00,00
4.6 Jarnac4,52257E00,00
4.6 MathSBML4,52257E00,00
4.6 Oscill8 Core4,52257E00,00
4.6 SBToolbox24,52258E00,00
4.6 SBWOdeSolver4,52257E00,00
4.6 VCell4,52257E00,00
4.6 copasi4,52257E00,00
4.6 edu.kgi.roadRunner4,52257E00,00
4.8 BioUML4,71574E00,00
4.8 ByoDyn4,71574E00,00
4.8 Jarnac4,71574E00,00
4.8 MathSBML4,71574E00,00
4.8 Oscill8 Core4,71574E00,00
4.8 SBToolbox24,71574E00,00
4.8 SBWOdeSolver4,71574E00,00
4.8 VCell4,71574E00,00
4.8 copasi4,71574E00,00
4.8 edu.kgi.roadRunner4,71574E00,00
5.0 BioUML4,90862E00,00
5.0 ByoDyn4,90862E00,00
5.0 Jarnac4,90862E00,00
5.0 MathSBML4,90862E00,00
5.0 Oscill8 Core4,90862E00,00
5.0 SBToolbox24,90865E00,00
5.0 SBWOdeSolver4,90862E00,00
5.0 VCell4,90862E00,00
5.0 copasi4,90862E00,00
5.0 edu.kgi.roadRunner4,90862E00,00
5.2 BioUML5,10122E00,00
5.2 ByoDyn5,10122E00,00
5.2 Jarnac5,10122E00,00
5.2 MathSBML5,10122E00,00
5.2 Oscill8 Core5,10122E00,00
5.2 SBToolbox25,10121E00,00
5.2 SBWOdeSolver5,10122E00,00
5.2 VCell5,10122E00,00
5.2 copasi5,10122E00,00
5.2 edu.kgi.roadRunner5,10122E00,00
5.4 BioUML5,29353E00,00
5.4 ByoDyn5,29353E00,00
5.4 Jarnac5,29353E00,00
5.4 MathSBML5,29353E00,00
5.4 Oscill8 Core5,29353E00,00
5.4 SBToolbox25,29352E00,00
5.4 SBWOdeSolver5,29353E00,00
5.4 VCell5,29353E00,00
5.4 copasi5,29353E00,00
5.4 edu.kgi.roadRunner5,29353E00,00
5.6 BioUML5,48556E00,00
5.6 ByoDyn5,48556E00,00
5.6 Jarnac5,48556E00,00
5.6 MathSBML5,48556E00,00
5.6 Oscill8 Core5,48556E00,00
5.6 SBToolbox25,48552E00,00
5.6 SBWOdeSolver5,48556E00,00
5.6 VCell5,48556E00,00
5.6 copasi5,48556E00,00
5.6 edu.kgi.roadRunner5,48556E00,00
5.8 BioUML5,67731E00,00
5.8 ByoDyn5,67731E00,00
5.8 Jarnac5,67731E00,00
5.8 MathSBML5,67731E00,00
5.8 Oscill8 Core5,67731E00,00
5.8 SBToolbox25,67733E00,00
5.8 SBWOdeSolver5,67731E00,00
5.8 VCell5,67731E00,00
5.8 copasi5,67731E00,00
5.8 edu.kgi.roadRunner5,67731E00,00
6.0 BioUML5,86877E00,00
6.0 ByoDyn5,86877E00,00
6.0 Jarnac5,86877E00,00
6.0 MathSBML5,86877E00,00
6.0 Oscill8 Core5,86877E00,00
6.0 SBToolbox25,86880E00,00
6.0 SBWOdeSolver5,86877E00,00
6.0 VCell5,86877E00,00
6.0 copasi5,86877E00,00
6.0 edu.kgi.roadRunner5,86877E00,00
6.2 BioUML6,05995E00,00
6.2 ByoDyn6,05995E00,00
6.2 Jarnac6,05995E00,00
6.2 MathSBML6,05995E00,00
6.2 Oscill8 Core6,05995E00,00
6.2 SBToolbox26,05995E00,00
6.2 SBWOdeSolver6,05995E00,00
6.2 VCell6,05995E00,00
6.2 copasi6,05995E00,00
6.2 edu.kgi.roadRunner6,05995E00,00
6.4 BioUML6,25085E00,00
6.4 ByoDyn6,25085E00,00
6.4 Jarnac6,25085E00,00
6.4 MathSBML6,25085E00,00
6.4 Oscill8 Core6,25085E00,00
6.4 SBToolbox26,25086E00,00
6.4 SBWOdeSolver6,25085E00,00
6.4 VCell6,25085E00,00
6.4 copasi6,25085E00,00
6.4 edu.kgi.roadRunner6,25085E00,00
6.6 BioUML6,44147E00,00
6.6 ByoDyn6,44147E00,00
6.6 Jarnac6,44147E00,00
6.6 MathSBML6,44147E00,00
6.6 Oscill8 Core6,44147E00,00
6.6 SBToolbox26,44146E00,00
6.6 SBWOdeSolver6,44147E00,00
6.6 VCell6,44147E00,00
6.6 copasi6,44147E00,00
6.6 edu.kgi.roadRunner6,44147E00,00
6.8 BioUML6,63181E00,00
6.8 ByoDyn6,63181E00,00
6.8 Jarnac6,63181E00,00
6.8 MathSBML6,63181E00,00
6.8 Oscill8 Core6,63181E00,00
6.8 SBToolbox26,63184E00,00
6.8 SBWOdeSolver6,63181E00,00
6.8 VCell6,63181E00,00
6.8 copasi6,63181E00,00
6.8 edu.kgi.roadRunner6,63181E00,00
7.0 BioUML6,82186E00,00
7.0 ByoDyn6,82186E00,00
7.0 Jarnac6,82186E00,00
7.0 MathSBML6,82186E00,00
7.0 Oscill8 Core6,82186E00,00
7.0 SBToolbox26,82185E00,00
7.0 SBWOdeSolver6,82186E00,00
7.0 VCell6,82186E00,00
7.0 copasi6,82186E00,00
7.0 edu.kgi.roadRunner6,82186E00,00
7.2 BioUML7,01164E00,00
7.2 ByoDyn7,01164E00,00
7.2 Jarnac7,01164E00,00
7.2 MathSBML7,01164E00,00
7.2 Oscill8 Core7,01164E00,00
7.2 SBToolbox27,01166E00,00
7.2 SBWOdeSolver7,01164E00,00
7.2 VCell7,01164E00,00
7.2 copasi7,01164E00,00
7.2 edu.kgi.roadRunner7,01164E00,00
7.4 BioUML7,20114E00,00
7.4 ByoDyn7,20114E00,00
7.4 Jarnac7,20114E00,00
7.4 MathSBML7,20114E00,00
7.4 Oscill8 Core7,20114E00,00
7.4 SBToolbox27,20117E00,00
7.4 SBWOdeSolver7,20114E00,00
7.4 VCell7,20114E00,00
7.4 copasi7,20114E00,00
7.4 edu.kgi.roadRunner7,20114E00,00
7.6 BioUML7,39036E00,00
7.6 ByoDyn7,39036E00,00
7.6 Jarnac7,39036E00,00
7.6 MathSBML7,39036E00,00
7.6 Oscill8 Core7,39036E00,00
7.6 SBToolbox27,39038E00,00
7.6 SBWOdeSolver7,39036E00,00
7.6 VCell7,39036E00,00
7.6 copasi7,39036E00,00
7.6 edu.kgi.roadRunner7,39036E00,00
7.8 BioUML7,57930E00,00
7.8 ByoDyn7,57930E00,00
7.8 Jarnac7,57930E00,00
7.8 MathSBML7,57930E00,00
7.8 Oscill8 Core7,57930E00,00
7.8 SBToolbox27,57929E00,00
7.8 SBWOdeSolver7,57930E00,00
7.8 VCell7,57930E00,00
7.8 copasi7,57930E00,00
7.8 edu.kgi.roadRunner7,57930E00,00
8.0 BioUML7,76796E00,00
8.0 ByoDyn7,76796E00,00
8.0 Jarnac7,76796E00,00
8.0 MathSBML7,76796E00,00
8.0 Oscill8 Core7,76796E00,00
8.0 SBToolbox27,76798E00,00
8.0 SBWOdeSolver7,76796E00,00
8.0 VCell7,76796E00,00
8.0 copasi7,76796E00,00
8.0 edu.kgi.roadRunner7,76796E00,00
8.2 BioUML7,95634E00,00
8.2 ByoDyn7,95634E00,00
8.2 Jarnac7,95634E00,00
8.2 MathSBML7,95634E00,00
8.2 Oscill8 Core7,95634E00,00
8.2 SBToolbox27,95639E00,00
8.2 SBWOdeSolver7,95634E00,00
8.2 VCell7,95634E00,00
8.2 copasi7,95634E00,00
8.2 edu.kgi.roadRunner7,95634E00,00
8.4 BioUML8,14445E00,00
8.4 ByoDyn8,14445E00,00
8.4 Jarnac8,14445E00,00
8.4 MathSBML8,14445E00,00
8.4 Oscill8 Core8,14445E00,00
8.4 SBToolbox28,14450E00,00
8.4 SBWOdeSolver8,14445E00,00
8.4 VCell8,14445E00,00
8.4 copasi8,14445E00,00
8.4 edu.kgi.roadRunner8,14445E00,00
8.6 BioUML8,33228E00,00
8.6 ByoDyn8,33228E00,00
8.6 Jarnac8,33228E00,00
8.6 MathSBML8,33228E00,00
8.6 Oscill8 Core8,33228E00,00
8.6 SBToolbox28,33232E00,00
8.6 SBWOdeSolver8,33228E00,00
8.6 VCell8,33228E00,00
8.6 copasi8,33228E00,00
8.6 edu.kgi.roadRunner8,33228E00,00
8.8 BioUML8,51983E00,00
8.8 ByoDyn8,51983E00,00
8.8 Jarnac8,51983E00,00
8.8 MathSBML8,51983E00,00
8.8 Oscill8 Core8,51983E00,00
8.8 SBToolbox28,51983E00,00
8.8 SBWOdeSolver8,51983E00,00
8.8 VCell8,51983E00,00
8.8 copasi8,51983E00,00
8.8 edu.kgi.roadRunner8,51983E00,00
9.0 BioUML8,70711E00,00
9.0 ByoDyn8,70711E00,00
9.0 Jarnac8,70711E00,00
9.0 MathSBML8,70711E00,00
9.0 Oscill8 Core8,70711E00,00
9.0 SBToolbox28,70714E00,00
9.0 SBWOdeSolver8,70711E00,00
9.0 VCell8,70711E00,00
9.0 copasi8,70711E00,00
9.0 edu.kgi.roadRunner8,70711E00,00
9.2 BioUML8,89411E00,00
9.2 ByoDyn8,89411E00,00
9.2 Jarnac8,89411E00,00
9.2 MathSBML8,89411E00,00
9.2 Oscill8 Core8,89411E00,00
9.2 SBToolbox28,89414E00,00
9.2 SBWOdeSolver8,89411E00,00
9.2 VCell8,89411E00,00
9.2 copasi8,89411E00,00
9.2 edu.kgi.roadRunner8,89411E00,00
9.4 BioUML9,08084E00,00
9.4 ByoDyn9,08084E00,00
9.4 Jarnac9,08084E00,00
9.4 MathSBML9,08084E00,00
9.4 Oscill8 Core9,08084E00,00
9.4 SBToolbox29,08086E00,00
9.4 SBWOdeSolver9,08084E00,00
9.4 VCell9,08084E00,00
9.4 copasi9,08084E00,00
9.4 edu.kgi.roadRunner9,08084E00,00
9.6 BioUML9,26729E00,00
9.6 ByoDyn9,26729E00,00
9.6 Jarnac9,26729E00,00
9.6 MathSBML9,26729E00,00
9.6 Oscill8 Core9,26729E00,00
9.6 SBToolbox29,26728E00,00
9.6 SBWOdeSolver9,26729E00,00
9.6 VCell9,26729E00,00
9.6 copasi9,26729E00,00
9.6 edu.kgi.roadRunner9,26729E00,00
9.8 BioUML9,45347E00,00
9.8 ByoDyn9,45347E00,00
9.8 Jarnac9,45347E00,00
9.8 MathSBML9,45347E00,00
9.8 Oscill8 Core9,45347E00,00
9.8 SBToolbox29,45349E00,00
9.8 SBWOdeSolver9,45347E00,00
9.8 VCell9,45347E00,00
9.8 copasi9,45347E00,00
9.8 edu.kgi.roadRunner9,45347E00,00
Max relative error0,00