Test: BIOMD0000000070.xml - Ok

test: BIOMD0000000070.xml
model: xml, reaction graph
plots: -
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000070.gif

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: MgATP  ATPf  Gri13P2  Gri3P  Sed7P  MgGri23P2  PEP  P2NADP  Gri23P2f  DHAP  P2NADPH  GlcA6P  MgAMP  P2f  Phi  Fru16P2  NADH  GSH  Rul5P  P1NADPH  GSSG  NADPf  Glcin  Gri2P  AMPf  Glc6P  ADPf  NAD  MgADP  Fru6P  P1f  E4P  Lac  Mgf  GraP  Pyr  Xul5P  NADPHf  P1NADP  Rib5P 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation MgATP ATPf Gri13P2 Gri3P Sed7P MgGri23P2 PEP P2NADP Gri23P2f DHAP P2NADPH GlcA6P MgAMP P2f Phi Fru16P2 NADH GSH Rul5P P1NADPH GSSG NADPf Glcin Gri2P AMPf Glc6P ADPf NAD MgADP Fru6P P1f E4P Lac Mgf GraP Pyr Xul5P NADPHf P1NADP Rib5P
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 ByoDyn1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 Jarnac1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 MathSBML1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 Oscill8 Core1,40000E00,00 - - 5,00000E-40,006,58000E-20,001,54000E-20,00 - - 1,09000E-20,000,00000E00,002,06010E00,001,49200E-10,00 - - 2,50000E-20,000,00000E00,00 - - 9,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,00 - - - - 0,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,00 - - 1,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 SBToolbox21,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 SBWOdeSolver1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 copasi1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 edu.kgi.roadRunner1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.0 jsim1,40000E00,002,50000E-10,005,00000E-40,006,58000E-20,001,54000E-20,005,00000E-10,001,09000E-20,000,00000E00,002,06010E00,001,49200E-10,002,40000E-20,002,50000E-20,000,00000E00,000,00000E00,009,99200E-10,009,70000E-30,002,00000E-40,003,11360E00,004,70000E-30,002,40000E-20,004,00000E-40,000,00000E00,004,56630E00,000,00000E00,003,94000E-20,008,40000E-30,002,50000E-10,006,53000E-20,001,00000E-10,001,53000E-20,000,00000E00,006,30000E-30,001,68030E00,008,00000E-10,006,10000E-30,008,40000E-20,001,27000E-20,004,00000E-30,000,00000E00,001,40000E-20,00
0.2 BioUML1,43231E00,001,80095E-10,004,81831E-40,006,48909E-20,001,83480E-20,006,56587E-10,001,08172E-20,001,84812E-30,001,91143E00,001,49521E-10,002,13176E-20,162,73851E-20,002,36020E-30,008,66703E-40,309,99526E-10,009,70588E-30,001,56345E-40,003,11403E00,004,82036E-30,002,38967E-20,211,86001E-40,252,13234E-50,394,58261E00,006,85853E-20,004,30129E-20,008,33469E-30,001,80539E-10,006,53437E-20,001,36028E-10,001,67277E-20,004,85780E-50,666,81545E-30,001,68030E00,005,72624E-10,006,07456E-30,008,39856E-20,001,30086E-20,004,91922E-30,455,17928E-60,271,43177E-20,00
0.2 ByoDyn1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83514E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70547E-30,001,56344E-40,003,11403E00,004,81922E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30155E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81658E-30,001,68030E00,005,72632E-10,006,07444E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.2 Jarnac1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83514E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70547E-30,001,56344E-40,003,11403E00,004,81922E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30155E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81658E-30,001,68030E00,005,72632E-10,006,07444E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.2 MathSBML1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83514E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70548E-30,001,56344E-40,003,11403E00,004,81922E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30155E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81658E-30,001,68030E00,005,72632E-10,006,07444E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.2 Oscill8 Core1,43238E00,00 - - 4,81826E-40,006,48896E-20,001,83514E-20,00 - - 1,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,00 - - 2,73876E-20,002,36025E-30,00 - - 9,99529E-10,009,70550E-30,001,56344E-40,003,11403E00,004,81924E-30,00 - - - - 2,12405E-50,004,58262E00,006,85859E-20,004,30156E-20,008,33456E-30,001,80543E-10,00 - - 1,36032E-10,001,67287E-20,004,88997E-50,006,81659E-30,001,68030E00,005,72633E-10,006,07445E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43147E-20,00
0.2 SBToolbox21,43241E00,001,80111E-10,004,81868E-40,006,48886E-20,001,83417E-20,006,56587E-10,001,08169E-20,001,84645E-30,001,91140E00,001,49532E-10,002,12841E-20,002,73893E-20,002,35981E-30,008,69291E-40,009,99530E-10,009,70568E-30,001,56340E-40,003,11400E00,004,81743E-30,002,39460E-20,001,86470E-40,002,12404E-50,004,58260E00,006,85725E-20,004,30092E-20,008,33453E-30,001,80527E-10,006,53440E-20,001,36018E-10,001,67263E-20,004,89000E-50,006,81640E-30,001,68030E00,005,72619E-10,006,07490E-30,008,39860E-20,001,30006E-20,004,89690E-30,005,19335E-60,001,43087E-20,00
0.2 SBWOdeSolver1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83515E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73876E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70550E-30,001,56344E-40,003,11403E00,004,81924E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30156E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81659E-30,001,68030E00,005,72633E-10,006,07445E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43147E-20,00
0.2 copasi1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83514E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70548E-30,001,56344E-40,003,11403E00,004,81922E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30155E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81657E-30,001,68030E00,005,72632E-10,006,07444E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.2 edu.kgi.roadRunner1,43238E00,001,80100E-10,004,81826E-40,006,48896E-20,001,83514E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70547E-30,001,56344E-40,003,11403E00,004,81922E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30155E-20,008,33456E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81658E-30,001,68030E00,005,72632E-10,006,07444E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.2 jsim1,43238E00,001,80100E-10,004,81825E-40,006,48895E-20,001,83512E-20,006,56596E-10,001,08172E-20,001,84641E-30,001,91143E00,001,49518E-10,002,12843E-20,002,73877E-20,002,36025E-30,008,69288E-40,009,99529E-10,009,70545E-30,001,56344E-40,003,11403E00,004,81923E-30,002,39459E-20,001,86466E-40,002,12405E-50,004,58262E00,006,85859E-20,004,30154E-20,008,33455E-30,001,80543E-10,006,53437E-20,001,36032E-10,001,67287E-20,004,88997E-50,006,81653E-30,001,68030E00,005,72632E-10,006,07443E-30,008,39856E-20,001,30056E-20,004,89695E-30,005,19327E-60,001,43146E-20,00
0.4 BioUML1,42679E00,001,79125E-10,004,78784E-40,006,56388E-20,001,64967E-20,006,59228E-10,001,09146E-20,001,90918E-30,001,91617E00,001,48852E-10,002,12637E-20,192,65255E-20,002,43771E-30,008,59767E-40,879,99030E-10,009,65774E-30,001,56524E-40,003,11403E00,004,73833E-30,122,38542E-20,381,85332E-40,662,22058E-50,864,57820E00,007,07289E-20,004,06894E-20,008,42508E-30,001,82843E-10,006,53435E-20,001,37976E-10,001,58137E-20,004,82255E-51,46,47461E-30,111,68031E00,005,73505E-10,006,04721E-30,008,39861E-20,001,27875E-20,124,94639E-31,15,35443E-60,571,40593E-20,12
0.4 ByoDyn1,42685E00,001,79135E-10,004,78784E-40,006,56395E-20,001,65136E-20,006,59225E-10,001,09145E-20,001,90942E-30,001,91618E00,001,48852E-10,002,12233E-20,002,65457E-20,002,43787E-30,008,67284E-40,009,99030E-10,009,65804E-30,001,56525E-40,003,11403E00,004,73260E-30,002,39457E-20,001,86564E-40,002,20161E-50,004,57820E00,007,07343E-20,004,06924E-20,008,42513E-30,001,82855E-10,006,53435E-20,001,37983E-10,001,58148E-20,004,89267E-50,006,48166E-30,001,68031E00,005,73499E-10,006,04724E-30,008,39862E-20,001,27720E-20,004,89419E-30,005,38588E-60,001,40428E-20,00
0.4 Jarnac1,42685E00,001,79135E-10,004,78784E-40,006,56395E-20,001,65136E-20,006,59225E-10,001,09145E-20,001,90942E-30,001,91618E00,001,48852E-10,002,12233E-20,002,65457E-20,002,43787E-30,008,67284E-40,009,99030E-10,009,65804E-30,001,56525E-40,003,11403E00,004,73260E-30,002,39457E-20,001,86564E-40,002,20161E-50,004,57820E00,007,07343E-20,004,06924E-20,008,42513E-30,001,82855E-10,006,53435E-20,001,37983E-10,001,58148E-20,004,89267E-50,006,48166E-30,001,68031E00,005,73499E-10,006,04724E-30,008,39862E-20,001,27720E-20,004,89419E-30,005,38588E-60,001,40428E-20,00
0.4 MathSBML1,42685E00,001,79135E-10,004,78784E-40,006,56395E-20,001,65136E-20,006,59225E-10,001,09145E-20,001,90942E-30,001,91618E00,001,48852E-10,002,12233E-20,002,65457E-20,002,43787E-30,008,67284E-40,009,99030E-10,009,65804E-30,001,56525E-40,003,11403E00,004,73260E-30,002,39457E-20,001,86564E-40,002,20161E-50,004,57820E00,007,07343E-20,004,06924E-20,008,42513E-30,001,82855E-10,006,53435E-20,001,37983E-10,001,58148E-20,004,89267E-50,006,48166E-30,001,68031E00,005,73499E-10,006,04724E-30,008,39862E-20,001,27720E-20,004,89419E-30,005,38589E-60,001,40428E-20,00
0.4 Oscill8 Core1,42685E00,00 - - 4,78784E-40,006,56395E-20,001,65137E-20,00 - - 1,09145E-20,001,90942E-30,001,91618E00,001,48852E-10,00 - - 2,65457E-20,002,43787E-30,00 - - 9,99030E-10,009,65804E-30,001,56525E-40,003,11403E00,004,73260E-30,00 - - - - 2,20161E-50,004,57820E00,007,07343E-20,004,06925E-20,008,42513E-30,001,82855E-10,00 - - 1,37983E-10,001,58148E-20,004,89267E-50,006,48167E-30,001,68031E00,005,73499E-10,006,04724E-30,008,39862E-20,001,27720E-20,004,89419E-30,005,38588E-60,001,40428E-20,00
0.4 SBToolbox21,42681E00,001,79131E-10,004,78793E-40,006,56450E-20,001,65065E-20,006,59236E-10,001,09149E-20,001,90918E-30,001,91619E00,001,48860E-10,002,12231E-20,002,65510E-20,002,43820E-30,008,67294E-40,009,99021E-10,009,65874E-30,001,56530E-40,003,11400E00,004,73136E-30,002,39460E-20,001,86560E-40,002,20135E-50,004,57822E00,007,07432E-20,004,06800E-20,008,42578E-30,001,82867E-10,006,53430E-20,001,37988E-10,001,58102E-20,004,89269E-50,006,48180E-30,001,68030E00,005,73509E-10,006,04743E-30,008,39860E-20,001,27682E-20,004,89420E-30,005,38523E-60,001,40392E-20,00
0.4 SBWOdeSolver1,42685E00,001,79135E-10,004,78784E-40,006,56395E-20,001,65137E-20,006,59225E-10,001,09145E-20,001,90942E-30,001,91618E00,001,48852E-10,002,12233E-20,002,65457E-20,002,43787E-30,008,67284E-40,009,99030E-10,009,65804E-30,001,56525E-40,003,11403E00,004,73260E-30,002,39457E-20,001,86564E-40,002,20161E-50,004,57820E00,007,07343E-20,004,06925E-20,008,42513E-30,001,82855E-10,006,53435E-2