Test: BIOMD0000000072.xml - Ok

test: BIOMD0000000072.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000072.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL9468910329.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Gd  G  Ga  R  L  Gbg  RL 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner  jsim 
timesimulation Gd G Ga R L Gbg RL
var error var error var error var error var error var error var error
0.0 BioUML3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 ByoDyn3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 Jarnac3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 MathSBML3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 Oscill8 Core3,00000E30,007,00000E30,00 - - 1,00000E40,006,02000E170,00 - - 0,00000E00,00
0.0 SBToolbox23,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 SBWOdeSolver3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 copasi3,00000E30,007,00000E30,00-4,54747E-130,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 edu.kgi.roadRunner3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.0 jsim3,00000E30,007,00000E30,000,00000E00,001,00000E40,006,02000E170,003,00000E30,000,00000E00,00
0.2 BioUML7,87074E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 ByoDyn7,87074E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 Jarnac7,87074E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 MathSBML7,87074E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 Oscill8 Core7,87685E-10,009,96445E30,00 - - 6,70825E30,006,02000E170,00 - - 3,29049E30,00
0.2 SBToolbox27,81112E-10,009,96446E30,003,47564E10,006,70820E30,006,02000E170,003,55379E10,003,29050E30,00
0.2 SBWOdeSolver7,87689E-10,009,96445E30,003,47584E10,006,70825E30,006,02000E170,003,55461E10,003,29049E30,00
0.2 copasi7,87076E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 edu.kgi.roadRunner7,87074E-10,009,96446E30,003,47571E10,006,70822E30,006,02000E170,003,55442E10,003,29052E30,00
0.2 jsim3,00000E33,81E57,00000E329,88,16146E-12100,06,70876E30,006,02000E170,003,00000E38,34E33,29204E30,00
0.4 BioUML1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 ByoDyn1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 Jarnac1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 MathSBML1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 Oscill8 Core1,09897E-10,009,87820E30,00 - - 4,50569E30,006,02000E170,00 - - 5,48983E30,00
0.4 SBToolbox21,09900E-10,009,87821E30,001,21680E20,004,50552E30,006,02000E170,001,21790E20,005,48999E30,00
0.4 SBWOdeSolver1,09897E-10,009,87820E30,001,21689E20,004,50569E30,006,02000E170,001,21799E20,005,48983E30,00
0.4 copasi1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 edu.kgi.roadRunner1,09897E-10,009,87820E30,001,21687E20,004,50566E30,006,02000E170,001,21797E20,005,48987E30,00
0.4 jsim3,00000E32,73E67,00000E329,12,89248E-11100,04,50638E30,006,02000E170,003,00000E32,36E35,49522E30,00
0.6 BioUML1,09949E-10,009,75895E30,002,40940E20,003,03189E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 ByoDyn1,09949E-10,009,75895E30,002,40940E20,003,03189E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 Jarnac1,09949E-10,009,75895E30,002,40940E20,003,03189E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 MathSBML1,09949E-10,009,75895E30,002,40940E20,003,03189E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 Oscill8 Core1,09949E-10,009,75895E30,00 - - 3,03193E30,006,02000E170,00 - - 6,95908E30,00
0.6 SBToolbox21,09950E-10,009,75909E30,002,40830E20,003,02963E30,006,02000E170,002,40940E20,006,96138E30,00
0.6 SBWOdeSolver1,09949E-10,009,75895E30,002,40941E20,003,03193E30,006,02000E170,002,41051E20,006,95908E30,00
0.6 copasi1,09949E-10,009,75895E30,002,40940E20,003,03190E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 edu.kgi.roadRunner1,09949E-10,009,75895E30,002,40940E20,003,03189E30,006,02000E170,002,41050E20,006,95911E30,00
0.6 jsim3,00000E32,73E67,00000E328,35,81222E-11100,03,03264E30,006,02000E170,003,00000E31,14E36,96976E30,12
0.8 BioUML1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 ByoDyn1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 Jarnac1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 MathSBML1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 Oscill8 Core1,09968E-10,009,62074E30,00 - - 2,04581E30,006,02000E170,00 - - 7,93981E30,00
0.8 SBToolbox21,09970E-10,009,62088E30,003,79004E20,002,04264E30,156,02000E170,003,79114E20,007,94298E30,00
0.8 SBWOdeSolver1,09968E-10,009,62074E30,003,79148E20,002,04581E30,006,02000E170,003,79258E20,007,93981E30,00
0.8 copasi1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 edu.kgi.roadRunner1,09968E-10,009,62074E30,003,79147E20,002,04578E30,006,02000E170,003,79257E20,007,93984E30,00
0.8 jsim3,00000E32,73E67,00000E327,29,29644E-11100,02,04646E30,006,02000E170,003,00000E36917,95674E30,17
1.0 BioUML1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 ByoDyn1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 Jarnac1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 MathSBML1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 Oscill8 Core1,09977E-10,009,47245E30,00 - - 1,38597E30,006,02000E170,00 - - 8,59368E30,00
1.0 SBToolbox21,09980E-10,009,47265E30,005,27274E20,001,38220E30,276,02000E170,005,27384E20,008,59744E30,00
1.0 SBWOdeSolver1,09977E-10,009,47245E30,005,27441E20,001,38597E30,006,02000E170,005,27551E20,008,59368E30,00
1.0 copasi1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 edu.kgi.roadRunner1,09977E-10,009,47245E30,005,27440E20,001,38595E30,006,02000E170,005,27550E20,008,59370E30,00
1.0 jsim3,00000E32,73E67,00000E326,11,31585E-10100,01,38655E30,006,02000E170,003,00000E34698,61745E30,23
1.2 BioUML1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 ByoDyn1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 Jarnac1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 MathSBML1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 Oscill8 Core1,09982E-10,009,31987E30,00 - - 9,44460E20,006,02000E170,00 - - 9,02884E30,00
1.2 SBToolbox21,09980E-10,009,32002E30,006,79870E20,009,41056E20,366,02000E170,006,79980E20,009,03226E30,00
1.2 SBWOdeSolver1,09982E-10,009,31987E30,006,80016E20,009,44461E20,006,02000E170,006,80126E20,009,02884E30,00
1.2 copasi1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 edu.kgi.roadRunner1,09982E-10,009,31987E30,006,80016E20,009,44441E20,006,02000E170,006,80126E20,009,02886E30,00
1.2 jsim3,00000E32,73E67,00000E324,91,72736E-10100,09,44965E20,006,02000E170,003,00000E33419,05983E30,31
1.4 BioUML1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 ByoDyn1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 Jarnac1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 MathSBML1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 Oscill8 Core1,09985E-10,009,16676E30,00 - - 6,49028E20,006,02000E170,00 - - 9,31766E30,00
1.4 SBToolbox21,09990E-10,009,16686E30,008,33020E20,006,46176E20,446,02000E170,008,33130E20,009,32056E30,00
1.4 SBWOdeSolver1,09985E-10,009,16676E30,008,33127E20,006,49029E20,006,02000E170,008,33237E20,009,31766E30,00
1.4 copasi1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 edu.kgi.roadRunner1,09985E-10,009,16676E30,008,33127E20,006,49013E20,006,02000E170,008,33237E20,009,31768E30,00
1.4 jsim3,00000E32,73E67,00000E323,62,15580E-10100,06,49474E20,006,02000E170,003,00000E32609,35613E30,38
1.6 BioUML1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 ByoDyn1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 Jarnac1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 MathSBML1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 Oscill8 Core1,09988E-10,009,01550E30,00 - - 4,51340E20,006,02000E170,00 - - 9,50857E30,00
1.6 SBToolbox21,09990E-10,009,01560E30,009,84310E20,004,48913E20,546,02000E170,009,84420E20,009,51097E30,00
1.6 SBWOdeSolver1,09988E-10,009,01550E30,009,84392E20,004,51340E20,006,02000E170,009,84502E20,009,50857E30,00
1.6 copasi1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 edu.kgi.roadRunner1,09988E-10,009,01550E30,009,84392E20,004,51329E20,006,02000E170,009,84502E20,009,50858E30,00
1.6 jsim3,00000E32,73E67,00000E322,42,59560E-10100,04,51743E20,006,02000E170,003,00000E32059,55466E30,46
1.8 BioUML1,09989E-10,008,86756E30,001,13233E30,003,19045E20,006,02000E170,001,13244E30,009,63398E30,00
1.8 ByoDyn1,09989E-10,008,86756E30,001,13233E30,003,19045E20,006,02000E170,001,13244E30,009,63398E30,00
1.8 Jarnac1,09989E-10,008,86756E30,001,13233E30,003,19045E20,006,02000E170,001,13244E30,009,63398E30,00
1.8 MathSBML1,09989E-10,008,86756E30,001,13233E30,003,19045E20,006,02000E170,001,13244E30,009,63398E30,00
1.8 Oscill8 Core1,09989E-10,008,86756E30,00 - - 3,19053E20,006,02000E170,00 - - 9,63397E30,00
1.8 SBToolbox21,09990E-10,008,86761E30,001,13229E30,003,17200E20,586,02000E170,001,13239E30,009,63580E30,00
1.8 SBWOdeSolver1,09989E-10,008,86756E30,001,13233E30,003,19053E20,006,02000E170,001,13244E30,009,63397E30,00
1.8 copasi1,09989E-10,008,86756E30,001,13233E30,003,19046E20,006,02000E170,001,13244E30,009,63397E30,00
1.8 edu.kgi.roadRunner1,09989E-10,008,86756E30,001,13233E30,003,19045E20,006,02000E170,001,13244E30,009,63398E30,00
1.8 jsim3,00000E32,73E67,00000E321,13,04300E-10100,03,19430E20,126,02000E170,003,00000E31659,68777E30,54
2.0 BioUML1,09991E-10,008,72382E30,001,27607E30,002,30521E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 ByoDyn1,09991E-10,008,72382E30,001,27607E30,002,30521E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 Jarnac1,09991E-10,008,72382E30,001,27607E30,002,30521E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 MathSBML1,09991E-10,008,72382E30,001,27607E30,002,30521E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 Oscill8 Core1,09991E-10,008,72382E30,00 - - 2,30527E20,006,02000E170,00 - - 9,71553E30,00
2.0 SBToolbox21,09990E-10,008,72382E30,001,27608E30,002,29022E20,656,02000E170,001,27618E30,009,71704E30,00
2.0 SBWOdeSolver1,09991E-10,008,72382E30,001,27607E30,002,30527E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 copasi1,09991E-10,008,72382E30,001,27607E30,002,30522E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 edu.kgi.roadRunner1,09991E-10,008,72382E30,001,27607E30,002,30521E20,006,02000E170,001,27618E30,009,71553E30,00
2.0 jsim3,00000E32,73E67,00000E319,83,49550E-10100,02,30893E20,166,02000E170,003,00000E31359,77711E30,62
2.2 BioUML1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 ByoDyn1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 Jarnac1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 MathSBML1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 Oscill8 Core1,09991E-10,008,58479E30,00 - - 1,71282E20,006,02000E170,00 - - 9,76776E30,00
2.2 SBToolbox21,09990E-10,008,58480E30,001,41510E30,001,70170E20,656,02000E170,001,41520E30,009,76886E30,00
2.2 SBWOdeSolver1,09991E-10,008,58479E30,001,41510E30,001,71282E20,006,02000E170,001,41521E30,009,76776E30,00
2.2 copasi1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 edu.kgi.roadRunner1,09991E-10,008,58479E30,001,41510E30,001,71278E20,006,02000E170,001,41521E30,009,76777E30,00
2.2 jsim3,00000E32,73E67,00000E318,53,95142E-10100,01,71648E20,216,02000E170,003,00000E31129,83715E30,70
2.4 BioUML1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 ByoDyn1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 Jarnac1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 MathSBML1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 Oscill8 Core1,09992E-10,008,45072E30,00 - - 1,31629E20,006,02000E170,00 - - 9,80038E30,00
2.4 SBToolbox21,09990E-10,008,45068E30,001,54922E30,001,30759E20,666,02000E170,001,54932E30,009,80121E30,00
2.4 SBWOdeSolver1,09992E-10,008,45072E30,001,54917E30,001,31629E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 copasi1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 edu.kgi.roadRunner1,09992E-10,008,45072E30,001,54917E30,001,31626E20,006,02000E170,001,54928E30,009,80038E30,00
2.4 jsim3,00000E32,73E67,00000E317,24,40966E-10100,01,32005E20,296,02000E170,003,00000E393,69,87759E30,78
2.6 BioUML1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 ByoDyn1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 Jarnac1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 MathSBML1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 Oscill8 Core1,09993E-10,008,32168E30,00 - - 1,05085E20,006,02000E170,00 - - 9,81986E30,00
2.6 SBToolbox21,09990E-10,008,32166E30,001,67824E30,001,04448E20,606,02000E170,001,67834E30,009,82052E30,00
2.6 SBWOdeSolver1,09993E-10,008,32168E30,001,67821E30,001,05085E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 copasi1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 edu.kgi.roadRunner1,09993E-10,008,32168E30,001,67821E30,001,05083E20,006,02000E170,001,67832E30,009,81986E30,00
2.6 jsim3,00000E32,73E67,00000E315,94,86944E-10100,01,05479E20,386,02000E170,003,00000E378,79,90492E30,86
2.8 BioUML1,09993E-10,008,19767E30,001,80222E30,008,73110E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 ByoDyn1,09993E-10,008,19767E30,001,80222E30,008,73110E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 Jarnac1,09993E-10,008,19767E30,001,80222E30,008,73110E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 MathSBML1,09993E-10,008,19767E30,001,80222E30,008,73110E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 Oscill8 Core1,09993E-10,008,19767E30,00 - - 8,73124E10,006,02000E170,00 - - 9,83057E30,00
2.8 SBToolbox21,09990E-10,008,19761E30,001,80229E30,008,68312E10,556,02000E170,001,80239E30,009,83109E30,00
2.8 SBWOdeSolver1,09993E-10,008,19767E30,001,80222E30,008,73122E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 copasi1,09993E-10,008,19767E30,001,80222E30,008,73107E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 edu.kgi.roadRunner1,09993E-10,008,19767E30,001,80222E30,008,73110E10,006,02000E170,001,80233E30,009,83057E30,00
2.8 jsim3,00000E32,73E67,00000E314,65,33028E-10100,08,77301E10,486,02000E170,003,00000E366,49,92347E30,94
3.0 BioUML1,09994E-10,008,07859E30,001,92130E30,007,54080E10,006,02000E170,001,92141E30,009,83540E30,00
3.0 ByoDyn1,09994E-10,008,07859E30,001,92130E30,007,