Test: BIOMD0000000073.xml - Ok

test: BIOMD0000000073.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000073.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL1109528188.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_10  species_11  species_14  species_15  species_12  species_13  species_9  species_7  species_8  species_5  species_6  species_3  species_4  species_2  species_1  species_0 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation species_10 species_11 species_14 species_15 species_12 species_13 species_9 species_7 species_8 species_5 species_6 species_3 species_4 species_2 species_1 species_0
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E00,000,00000E00,000,00000E00,001,60000E00,000,00000E00,001,40000E00,000,00000E00,001,90000E00,000,00000E00,000,00000E00,002,00000E00,009,00000E00,00
0.2 BioUML2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38535E-20,001,70492E00,001,68564E-10,001,45827E00,005,74631E-20,001,74508E00,003,83393E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.2 ByoDyn2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38535E-20,001,70492E00,001,68564E-10,001,45827E00,005,74631E-20,001,74508E00,003,83393E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.2 MathSBML2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38535E-20,001,70492E00,001,68564E-10,001,45827E00,005,74631E-20,001,74508E00,003,83392E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.2 SBToolbox22,53108E-20,007,82990E-30,005,48159E-20,001,25909E-10,007,41871E-10,007,08986E-20,002,38715E-20,001,70490E00,001,68549E-10,001,45824E00,005,75005E-20,001,74512E00,003,83344E-10,007,79788E-20,002,03277E00,008,94785E00,00
0.2 SBWOdeSolver2,53158E-20,007,83339E-30,005,48149E-20,001,25901E-10,007,41881E-10,007,09033E-20,002,38533E-20,001,70492E00,001,68564E-10,001,45827E00,005,74628E-20,001,74509E00,003,83392E-10,007,79847E-20,002,03281E00,008,94789E00,00
0.2 VCell2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38534E-20,001,70492E00,001,68564E-10,001,45827E00,005,74627E-20,001,74508E00,003,83393E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.2 copasi2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38535E-20,001,70492E00,001,68564E-10,001,45827E00,005,74631E-20,001,74508E00,003,83393E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.2 edu.kgi.roadRunner2,53160E-20,007,83335E-30,005,48154E-20,001,25903E-10,007,41880E-10,007,09038E-20,002,38535E-20,001,70492E00,001,68564E-10,001,45827E00,005,74631E-20,001,74508E00,003,83393E-10,007,79851E-20,002,03281E00,008,94789E00,00
0.4 BioUML4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90290E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 ByoDyn4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90290E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 MathSBML4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90290E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 SBToolbox24,10003E-20,001,92809E-20,008,82037E-20,001,77042E-10,005,50814E-10,001,16922E-10,004,90641E-20,001,80600E00,003,27917E-10,001,51429E00,001,17839E-10,001,65663E00,007,43042E-10,001,36375E-10,002,06195E00,008,90229E00,00
0.4 SBWOdeSolver4,10377E-20,001,92855E-20,008,81858E-20,001,76978E-10,005,50866E-10,001,16919E-10,004,90286E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 VCell4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90289E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43072E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 copasi4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90289E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.4 edu.kgi.roadRunner4,10375E-20,001,92854E-20,008,81864E-20,001,76980E-10,005,50864E-10,001,16919E-10,004,90290E-20,001,80597E00,003,27919E-10,001,51431E00,001,17792E-10,001,65668E00,007,43071E-10,001,36380E-10,002,06194E00,008,90232E00,00
0.6 BioUML6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.6 ByoDyn6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.6 MathSBML6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.6 SBToolbox26,11312E-20,143,11479E-20,001,09211E-10,001,89331E-10,004,05074E-10,001,50821E-10,006,78346E-20,001,90391E00,004,79890E-10,001,56844E00,001,68590E-10,001,60910E00,001,08998E00,001,84268E-10,002,08713E00,008,86053E00,00
0.6 SBWOdeSolver6,12205E-20,003,11509E-20,001,09175E-10,001,89230E-10,004,05168E-10,001,50818E-10,006,77971E-20,001,90389E00,004,79841E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84276E-10,002,08708E00,008,86056E00,00
0.6 VCell6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.6 copasi6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.6 edu.kgi.roadRunner6,12192E-20,003,11504E-20,001,09176E-10,001,89231E-10,004,05166E-10,001,50818E-10,006,77975E-20,001,90389E00,004,79842E-10,001,56847E00,001,68550E-10,001,60915E00,001,08996E00,001,84277E-10,002,08708E00,008,86056E00,00
0.8 BioUML9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
0.8 ByoDyn9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
0.8 MathSBML9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
0.8 SBToolbox29,24339E-20,154,44015E-20,001,21276E-10,001,79518E-10,002,93549E-10,001,77256E-10,008,16294E-20,001,99952E00,006,18507E-10,001,62109E00,002,11849E-10,001,58894E00,001,41962E00,002,25277E-10,002,10911E00,008,82076E00,00
0.8 SBWOdeSolver9,25730E-20,004,43998E-20,001,21219E-10,001,79404E-10,002,93679E-10,001,77247E-10,008,15942E-20,001,99947E00,006,18412E-10,001,62109E00,002,11813E-10,001,58899E00,001,41957E00,002,25286E-10,002,10907E00,008,82078E00,00
0.8 VCell9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
0.8 copasi9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
0.8 edu.kgi.roadRunner9,25712E-20,004,43995E-20,001,21220E-10,001,79405E-10,002,93677E-10,001,77248E-10,008,15945E-20,001,99947E00,006,18414E-10,001,62109E00,002,11813E-10,001,58898E00,001,41957E00,002,25287E-10,002,10907E00,008,82078E00,00
1.0 BioUML1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.0 ByoDyn1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.0 MathSBML1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.0 SBToolbox21,38709E-10,155,94460E-20,001,26012E-10,001,57746E-10,002,09978E-10,001,98574E-10,009,18290E-20,002,09343E00,007,39492E-10,001,67245E00,002,49384E-10,001,58757E00,001,72851E00,002,61310E-10,002,12871E00,008,78169E00,00
1.0 SBWOdeSolver1,38915E-10,005,94335E-20,001,25937E-10,001,57643E-10,002,10143E-10,001,98568E-10,009,17990E-20,002,09338E00,007,39347E-10,001,67247E00,002,49347E-10,001,58764E00,001,72842E00,002,61319E-10,002,12870E00,008,78168E00,00
1.0 VCell1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.0 copasi1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.0 edu.kgi.roadRunner1,38913E-10,005,94332E-20,001,25938E-10,001,57644E-10,002,10140E-10,001,98568E-10,009,17993E-20,002,09338E00,007,39349E-10,001,67247E00,002,49348E-10,001,58764E00,001,72842E00,002,61320E-10,002,12870E00,008,78168E00,00
1.2 BioUML2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 ByoDyn2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 MathSBML2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 SBToolbox22,01930E-10,137,57154E-20,001,24475E-10,001,30996E-10,001,50414E-10,132,16183E-10,009,94255E-20,002,18615E00,008,40967E-10,001,72290E00,002,82423E-10,001,59909E00,002,01543E00,002,93526E-10,002,14659E00,008,74234E00,00
1.2 SBWOdeSolver2,02205E-10,007,56884E-20,001,24391E-10,001,30917E-10,001,50611E-10,002,16174E-10,009,93981E-20,002,18614E00,008,40774E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 VCell2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 copasi2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.2 edu.kgi.roadRunner2,02203E-10,007,56882E-20,001,24391E-10,001,30917E-10,001,50608E-10,002,16174E-10,009,93983E-20,002,18614E00,008,40777E-10,001,72287E00,002,82389E-10,001,59915E00,002,01526E00,002,93536E-10,002,14656E00,008,74237E00,00
1.4 BioUML2,82739E-10,009,22324E-20,001,17907E-10,001,04216E-10,001,11841E-10,002,30966E-10,001,05085E-10,002,27812E00,009,22932E-10,001,77245E00,003,11812E-10,001,61898E00,002,28081E00,003,22708E-10,002,16307E00,008,70227E00,00
1.4 ByoDyn2,82739E-10,009,22324E-20,001,17907E-10,001,04216E-10,001,11841E-10,002,30966E-10,001,05085E-10,002,27812E00,009,22932E-10,001,77245E00,003,11812E-10,001,61898E00,002,28081E00,003,22708E-10,002,16307E00,008,70227E00,00
1.4 MathSBML2,82739E-10,009,22324E-20,001,17907E-10,001,04216E-10,001,11841E-10,002,30966E-10,001,05085E-10,002,27812E00,009,22932E-10,001,77245E00,003,11812E-10,001,61898E00,002,28081E00,003,22708E-10,002,16307E00,008,70227E00,00
1.4 SBToolbox22,82388E-10,129,22731E-20,001,18017E-10,001,04269E-10,001,11599E-10,222,30983E-10,001,05115E-10,002,27816E00,009,23185E-10,001,77245E00,003,11844E-10,001,61885E00,002,28101E00,003,22704E-10,002,16309E00,008,70228E00,00
1.4 SBWOdeSolver2,82741E-10,009,22325E-20,001,17907E-10,001,04217E-10,001,11844E-10,002,30966E-10,001,05084E-10,002,27812E00,009,22930E-10,001,77245E00,003,11811E-10,001,61898E00,002,28081E00,003,22707E-10,002,16307E00,008,70227E00,00
1.4 VCell2,82739E-10,009,22325E-20,001,17907E-10,001,04216E-10,001,11841E-10,002,30966E-10,001,05085E-10,002,27812E00,009,22932E-10,001,77245E00,003,11812E-10,001,61898E00,002,28081E00,003,22708E-10,002,16307E00,008,70227E00,00
1.4 copasi2,82739E-10,009,22324E-20,001,17907E-10,00