Test: BIOMD0000000077.xml - Ok

test: BIOMD0000000077.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000077.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL3092061764.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_2  species_1  species_0  species_8  species_5  species_6  species_3  species_4 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation species_2 species_1 species_0 species_8 species_5 species_6 species_3 species_4
var error var error var error var error var error var error var error var error
0.0 BioUML1,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn1,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML1,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 Oscill8 Core1,00000E-20,000,00000E00,00 - - - - - - 0,00000E00,000,00000E00,00 - -
0.0 SBToolbox21,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver1,00000E-20,000,00000E00,001,00000E00,00 - - 1,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi1,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner1,00000E-20,000,00000E00,001,00000E00,000,00000E00,001,00000E-10,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML7,04554E-30,001,55105E-30,009,97046E-10,002,76308E-10,009,95383E-20,004,36133E20,002,39984E-40,004,61718E-40,00
0.2 ByoDyn7,04551E-30,001,55107E-30,009,97046E-10,002,76328E-10,009,95383E-20,004,36111E20,002,39988E-40,004,61724E-40,00
0.2 MathSBML7,04551E-30,001,55107E-30,009,97046E-10,002,76327E-10,009,95383E-20,004,36110E20,002,39987E-40,004,61723E-40,00
0.2 Oscill8 Core7,04553E-30,001,55106E-30,00 - - - - - - 4,36124E20,002,39985E-40,00 - -
0.2 SBToolbox27,04529E-30,001,55165E-30,009,97042E-10,002,76140E-10,009,95386E-20,004,35602E20,122,39926E-40,004,61594E-40,00
0.2 SBWOdeSolver7,04553E-30,001,55106E-30,009,97046E-10,00 - - 9,95383E-20,004,36126E20,002,39985E-40,004,61720E-40,00
0.2 copasi7,04551E-30,001,55107E-30,009,97046E-10,002,76328E-10,009,95383E-20,004,36111E20,002,39988E-40,004,61724E-40,00
0.2 edu.kgi.roadRunner7,04551E-30,001,55107E-30,009,97046E-10,002,76906E-10,219,95383E-20,004,36110E20,002,39988E-40,004,61724E-40,00
0.4 BioUML5,49031E-30,001,51151E-30,009,95490E-10,004,21826E-10,009,90075E-20,001,49037E30,005,06571E-40,009,92519E-40,00
0.4 ByoDyn5,49000E-30,001,51150E-30,009,95490E-10,004,21902E-10,009,90074E-20,001,49053E30,005,06624E-40,009,92626E-40,00
0.4 MathSBML5,49000E-30,001,51150E-30,009,95490E-10,004,21902E-10,009,90074E-20,001,49053E30,005,06624E-40,009,92626E-40,00
0.4 Oscill8 Core5,49002E-30,001,51150E-30,00 - - - - - - 1,49052E30,005,06619E-40,00 - -
0.4 SBToolbox25,48957E-30,001,51150E-30,009,95492E-10,004,21870E-10,009,90069E-20,001,49011E30,005,06669E-40,009,92775E-40,00
0.4 SBWOdeSolver5,49002E-30,001,51150E-30,009,95490E-10,00 - - 9,90074E-20,001,49052E30,005,06620E-40,009,92617E-40,00
0.4 copasi5,49000E-30,001,51150E-30,009,95490E-10,004,21902E-10,009,90074E-20,001,49053E30,005,06624E-40,009,92627E-40,00
0.4 edu.kgi.roadRunner5,49000E-30,001,51150E-30,009,95490E-10,004,17552E-11,09,90074E-20,001,49053E30,005,06624E-40,009,92627E-40,00
0.6 BioUML4,51171E-30,001,47032E-30,009,94512E-10,003,92951E-10,009,86689E-20,002,32267E30,006,77907E-40,001,33108E-30,00
0.6 ByoDyn4,51039E-30,001,47026E-30,009,94510E-10,003,92990E-10,009,86685E-20,002,32374E30,006,78137E-40,001,33154E-30,00
0.6 MathSBML4,51039E-30,001,47026E-30,009,94510E-10,003,92990E-10,009,86685E-20,002,32374E30,006,78136E-40,001,33154E-30,00
0.6 Oscill8 Core4,51042E-30,001,47026E-30,00 - - - - - - 2,32372E30,006,78132E-40,00 - -
0.6 SBToolbox24,50884E-30,001,47020E-30,009,94512E-10,003,93013E-10,009,86678E-20,002,32454E30,006,78388E-40,001,33209E-30,00
0.6 SBWOdeSolver4,51042E-30,001,47026E-30,009,94510E-10,00 - - 9,86685E-20,002,32372E30,006,78132E-40,001,33153E-30,00
0.6 copasi4,51039E-30,001,47026E-30,009,94510E-10,003,92990E-10,009,86685E-20,002,32375E30,006,78137E-40,001,33154E-30,00
0.6 edu.kgi.roadRunner4,51039E-30,001,47026E-30,009,94510E-10,003,85275E-12,09,86685E-20,002,32375E30,006,78137E-40,001,33154E-30,00
0.8 BioUML3,89136E-30,001,44388E-30,009,93891E-10,003,46216E-10,009,84546E-20,002,87243E30,007,86979E-40,001,54540E-30,00
0.8 ByoDyn3,89020E-30,001,44383E-30,009,93890E-10,003,46140E-10,009,84542E-20,002,87345E30,007,87182E-40,001,54580E-30,00
0.8 MathSBML3,89020E-30,001,44383E-30,009,93890E-10,003,46140E-10,009,84542E-20,002,87345E30,007,87182E-40,001,54580E-30,00
0.8 Oscill8 Core3,89022E-30,001,44383E-30,00 - - - - - - 2,87343E30,007,87178E-40,00 - -
0.8 SBToolbox23,88698E-30,001,44369E-30,009,93892E-10,003,46189E-10,009,84527E-20,002,87613E30,007,87741E-40,001,54692E-30,00
0.8 SBWOdeSolver3,89022E-30,001,44383E-30,009,93890E-10,00 - - 9,84542E-20,002,87343E30,007,87178E-40,001,54580E-30,00
0.8 copasi3,89020E-30,001,44383E-30,009,93890E-10,003,46140E-10,009,84542E-20,002,87345E30,007,87182E-40,001,54580E-30,00
0.8 edu.kgi.roadRunner3,89020E-30,001,44383E-30,009,93890E-10,003,42424E-11,19,84542E-20,002,87345E30,007,87182E-40,001,54580E-30,00
1.0 BioUML3,49818E-30,001,42707E-30,009,93498E-10,003,11541E-10,009,83189E-20,003,22343E30,008,56283E-40,001,68110E-30,00
1.0 ByoDyn3,49720E-30,001,42702E-30,009,93497E-10,003,11448E-10,009,83186E-20,003,22430E30,008,56454E-40,001,68143E-30,00
1.0 MathSBML3,49721E-30,001,42702E-30,009,93497E-10,003,11448E-10,009,83186E-20,003,22430E30,008,56454E-40,001,68143E-30,00
1.0 Oscill8 Core3,49722E-30,001,42703E-30,00 - - - - - - 3,22428E30,008,56451E-40,00 - -
1.0 SBToolbox23,49417E-30,001,42687E-30,009,93492E-10,003,11479E-10,009,83175E-20,003,22691E30,008,56975E-40,001,68246E-30,00
1.0 SBWOdeSolver3,49722E-30,001,42703E-30,009,93497E-10,00 - - 9,83186E-20,003,22428E30,008,56451E-40,001,68143E-30,00
1.0 copasi3,49721E-30,001,42702E-30,009,93497E-10,003,11448E-10,009,83186E-20,003,22430E30,008,56454E-40,001,68143E-30,00
1.0 edu.kgi.roadRunner3,49721E-30,001,42702E-30,009,93497E-10,003,05540E-11,99,83186E-20,003,22430E30,008,56454E-40,001,68143E-30,00
1.2 BioUML3,24814E-30,001,41635E-30,009,93248E-10,002,90139E-10,009,82327E-20,003,44679E30,009,00425E-40,001,76733E-30,00
1.2 ByoDyn3,24805E-30,001,41635E-30,009,93248E-10,002,90128E-10,009,82326E-20,003,44688E30,009,00443E-40,001,76736E-30,00
1.2 MathSBML3,24805E-30,001,41635E-30,009,93248E-10,002,90128E-10,009,82326E-20,003,44688E30,009,00443E-40,001,76736E-30,00
1.2 Oscill8 Core3,24806E-30,001,41635E-30,00 - - - - - - 3,44687E30,009,00441E-40,00 - -
1.2 SBToolbox23,24499E-30,001,41625E-30,009,93241E-10,002,90157E-10,009,82315E-20,003,44963E30,009,00979E-40,001,76839E-30,00
1.2 SBWOdeSolver3,24806E-30,001,41635E-30,009,93248E-10,00 - - 9,82326E-20,003,44687E30,009,00441E-40,001,76736E-30,00
1.2 copasi3,24805E-30,001,41635E-30,009,93248E-10,002,90128E-10,009,82326E-20,003,44688E30,009,00442E-40,001,76736E-30,00
1.2 edu.kgi.roadRunner3,24805E-30,001,41635E-30,009,93248E-10,002,87630E-10,869,82326E-20,003,44688E30,009,00442E-40,001,76736E-30,00
1.4 BioUML3,09069E-30,001,40959E-30,009,93091E-10,002,78194E-10,009,81784E-20,003,58738E30,009,28252E-40,001,82161E-30,00
1.4 ByoDyn3,09003E-30,001,40956E-30,009,93090E-10,002,78129E-10,009,81782E-20,003,58798E30,009,28369E-40,001,82184E-30,00
1.4 MathSBML3,09003E-30,001,40956E-30,009,93090E-10,002,78129E-10,009,81782E-20,003,58798E30,009,28369E-40,001,82184E-30,00
1.4 Oscill8 Core3,09003E-30,001,40956E-30,00 - - - - - - 3,58797E30,009,28368E-40,00 - -
1.4 SBToolbox23,08708E-30,001,40944E-30,009,93090E-10,002,78152E-10,009,81773E-20,003,59060E30,009,28883E-40,001,82281E-30,00
1.4 SBWOdeSolver3,09003E-30,001,40956E-30,009,93090E-10,00 - - 9,81782E-20,003,58797E30,009,28368E-40,001,82183E-30,00
1.4 copasi3,09003E-30,001,40956E-30,009,93090E-10,002,78129E-10,009,81782E-20,003,58798E30,009,28369E-40,001,82184E-30,00
1.4 edu.kgi.roadRunner3,09003E-30,001,40956E-30,009,93090E-10,002,76067E-10,749,81782E-20,003,58798E30,009,28368E-40,001,82183E-30,00
1.6 BioUML2,99045E-30,001,40529E-30,009,92990E-10,002,71783E-10,009,81438E-20,003,67685E30,009,45978E-40,001,85615E-30,00
1.6 ByoDyn2,98979E-30,001,40526E-30,009,92990E-10,002,71727E-10,009,81436E-20,003,67745E30,009,46096E-40,001,85638E-30,00
1.6 MathSBML2,98979E-30,001,40526E-30,009,92990E-10,002,71727E-10,009,81436E-20,003,67745E30,009,46095E-40,001,85638E-30,00
1.6 Oscill8 Core2,98979E-30,001,40526E-30,00 - - - - - - 3,67744E30,009,46094E-40,00 - -
1.6 SBToolbox22,98722E-30,001,40513E-30,009,92990E-10,002,71747E-10,009,81432E-20,003,67974E30,009,46558E-40,001,85728E-30,00
1.6 SBWOdeSolver2,98979E-30,001,40526E-30,009,92990E-10,00 - - 9,81436E-20,003,67744E30,009,46095E-40,001,85638E-30,00
1.6 copasi2,98979E-30,001,40526E-30,009,92990E-10,002,71727E-10,009,81436E-20,003,67744E30,009,46095E-40,001,85638E-30,00
1.6 edu.kgi.roadRunner2,98979E-30,001,40526E-30,009,92990E-10,002,70289E-10,539,81436E-20,003,67744E30,009,46094E-40,001,85638E-30,00
1.8 BioUML2,92683E-30,001,40255E-30,009,92927E-10,002,68485E-10,009,81219E-20,003,73362E30,009,57233E-40,001,87807E-30,00
1.8 ByoDyn2,92619E-30,001,40252E-30,009,92926E-10,002,68440E-10,009,81217E-20,003,73419E30,009,57346E-40,001,87830E-30,00
1.8 MathSBML2,92619E-30,001,40252E-30,009,92926E-10,002,68440E-10,009,81217E-20,003,73419E30,009,57346E-40,001,87830E-30,00
1.8 Oscill8 Core2,92620E-30,001,40252E-30,00 - - - - - - 3,73419E30,009,57346E-40,00 - -
1.8 SBToolbox22,92363E-30,001,40242E-30,009,92922E-10,002,68462E-10,009,81212E-20,003,73642E30,009,57793E-40,001,87916E-30,00
1.8 SBWOdeSolver2,92619E-30,001,40252E-30,009,92926E-10,00 - - 9,81217E-20,003,73419E30,009,57346E-40,001,87829E-30,00
1.8 copasi2,92619E-30,001,40252E-30,009,92926E-10,002,68440E-10,009,81217E-20,003,73419E30,009,57346E-40,001,87830E-30,00
1.8 edu.kgi.roadRunner2,92620E-30,001,40252E-30,009,92926E-10,002,68365E-10,009,81217E-20,003,73419E30,009,57345E-40,001,87829E-30,00
2.0 BioUML2,88636E-30,001,40081E-30,009,92886E-10,002,66834E-10,009,81080E-20,003,76973E30,009,64396E-40,001,89202E-30,00
2.0 ByoDyn2,88584E-30,001,40079E-30,009,92886E-10,002,66805E-10,009,81078E-20,003,77019E30,009,64487E-40,001,89220E-30,00
2.0 MathSBML2,88584E-30,001,40079E-30,009,92886E-10,002,66805E-10,009,81078E-20,003,77019E30,009,64487E-40,001,89220E-30,00
2.0 Oscill8 Core2,88584E-30,001,40079E-30,00 - - - - - - 3,77018E30,009,64486E-40,00 - -
2.0 SBToolbox22,88362E-30,001,40070E-30,009,92880E-10,002,66822E-10,009,81070E-20,003,77220E30,009,64884E-40,001,89298E-30,00
2.0 SBWOdeSolver2,88584E-30,001,40079E-30,009,92886E-10,00 - - 9,81078E-20,003,77018E30,009,64486E-40,001,89220E-30,00
2.0 copasi2,88584E-30,001,40079E-30,009,92886E-10,002,66805E-10,009,81078E-20,003,77018E30,009,64486E-40,001,89220E-30,00
2.0 edu.kgi.roadRunner2,88585E-30,001,40079E-30,009,92886E-10,002,66662E-10,009,81078E-20,003,77018E30,009,64486E-40,001,89220E-30,00
2.2 BioUML2,86056E-30,001,39970E-30,009,92861E-10,002,66029E-10,009,80991E-20,003,79273E30,009,68961E-40,001,90091E-30,00
2.2 ByoDyn2,86024E-30,001,39969E-30,009,92860E-10,002,66015E-10,009,80990E-20,003,79302E30,009,69018E-40,001,90102E-30,00
2.2 MathSBML2,86024E-30,001,39969E-30,009,92860E-10,002,66015E-10,009,80990E-20,003,79302E30,009,69018E-40,001,90102E-30,00
2.2 Oscill8 Core2,86024E-30,001,39969E-30,00 - - - - - - 3,79302E30,009,69018E-40,00 - -
2.2 SBToolbox22,85862E-30,001,39962E-30,009,92860E-10,002,66027E-10,009,80982E-20,003,79440E30,009,69300E-40,001,90153E-30,00
2.2 SBWOdeSolver2,86024E-30,001,39969E-30,009,92860E-10,00 - - 9,80990E-20,003,79302E30,009,69018E-40,001,90102E-30,00
2.2 copasi2,86024E-30,001,39969E-30,009,92860E-10,002,66015E-10,009,80990E-20,003,79302E30,009,69017E-40,001,90102E-30,00
2.2 edu.kgi.roadRunner2,86024E-30,001,39969E-30,009,92860E-10,002,65895E-10,009,80990E-20,003,79302E30,009,69017E-40,001,90102E-30,00
2.4 BioUML2,84416E-30,001,39900E-30,009,92844E-10,002,65652E-10,009,80934E-20,003,80736E30,009,71864E-40,001,90656E-30,00
2.4 ByoDyn2,84399E-30,001,39899E-30,009,92844E-10,002,65646E-10,009,80934E-20,003,80751E30,009,71894E-40,001,90662E-30,00
2.4 MathSBML2,84399E-30,001,39899E-30,009,92844E-10,002,65646E-10,009,80934E-20,003,80751E30,009,71894E-40,001,90662E-30,00
2.4 Oscill8 Core2,84399E-30,001,39899E-30,00 - - - - - - 3,80751E30,009,71893E-40,00 - -
2.4 SBToolbox22,84234E-30,001,39890E-30,009,92840E-10,002,65655E-10,009,80930E-20,003,80898E30,009,72194E-40,001,90715E-30,00
2.4 SBWOdeSolver2,84399E-30,001,39899E-30,009,92844E-10,00 - - 9,80934E-20,003,80751E30,009,71893E-40,001,90662E-30,00
2.4 copasi2,84399E-30,001,39899E-30,009,92844E-10,002,65646E-10,009,80934E-20,003,80751E30,009,71893E-40,001,90662E-30,00
2.4 edu.kgi.roadRunner2,84399E-30,001,39899E-30,009,92844E-10,002,65563E-10,009,80934E-20,003,80751E30,009,71893E-40,001,90662E-30,00
2.6 BioUML2,83388E-30,001,39855E-30,009,92834E-10,002,65484E-10,009,80899E-20,003,81653E30,009,73684E-40,001,91010E-30,00
2.6 ByoDyn2,83368E-30,001,39855E-30,009,92834E-10,002,65479E-10,009,80898E-20,003,81671E30,009,73719E-40,001,91017E-30,00
2.6 MathSBML2,83368E-30,001,39855E-30,009,92834E-10,002,65479E-10,009,80898E-20,003,81670E30,009,73719E-40,001,91017E-30,00
2.6 Oscill8 Core2,83368E-30,001,39855E-30,00 - - - - - - 3,81670E30,009,73718E-40,00 - -
2.6 SBToolbox22,83260E-30,001,39850E-30,009,92830E-10,002,65490E-10,009,80893E-20,003,81770E30,009,73912E-40,001,91055E-30,00
2.6 SBWOdeSolver2,83368E-30,001,39855E-30,009,92834E-10,00 - - 9,80898E-20,003,81670E30,009,73718E-40,001,91017E-30,00
2.6 copasi2,83368E-30,001,39855E-30,009,92834E-10,002,65479E-10,009,80898E-20,003,81670E30,009,73718E-40,001,91017E-30,00
2.6 edu.kgi.roadRunner2,83368E-30,001,39855E-30,009,92834E-10,002,65428E-10,009,80898E-20,003,81670E30,009,73718E-40,001,91017E-30,00
2.8 BioUML2,82735E-30,001,39827E-30,009,92827E-10,002,65412E-10,009,80877E-20,003,82235E30,009,74840E-40,001,91235E-30,00
2.8 ByoDyn2,82714E-30,001,39826E-30,009,92827E-10,002,65409E-10,009,80876E-20,003,82254E30,009,74877E-40,001,91242E-30,00
2.8 MathSBML2,82714E-30,001,39826E-30,009,92827E-10,002,65409E-10,009,80876E-20,003,82254E30,009,74877E-40,001,91242E-30,00
2.8 Oscill8 Core2,82714E-30,001,39826E-30,00 - - - - - - 3,82254E30,009,74877E-40,00 - -
2.8 SBToolbox22,82598E-30,001,39820E-30,009,92830E-10,002,65420E-10,009,80870E-20,003,82354E30,009,75076E-40,001,91277E-30,00
2.8 SBWOdeSolver2,82714E-30,001,39826E-30,009,92827E-10,00 - - 9,80876E-20,003,82254E30,009,74877E-40,001,91242E-30,00
2.8 copasi2,82714E-30,001,39826E-30,009,92827E-10,002,65409E-10,009,80876E-20,003,82254E30,009,74877E-40,001,91242E-30,00
2.8 edu.kgi.roadRunner2,82714E-30,001,39826E-30,009,92827E-10,002,65378E-10,009,80876E-20,003,82254E30,009,74876E-40,001,91242E-30,00
3.0 BioUML2,82315E-30,001,39809E-30,009,92823E-10,002,65383E-10,009,80862E-20,003,82610E30,009,75584E-40,00