Test: BIOMD0000000079.xml - Ok

test: BIOMD0000000079.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000079.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4644593552.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_2  species_1  species_0 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation species_2 species_1 species_0
var error var error var error
0.0 BioUML5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 ByoDyn5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 MathSBML5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 SBToolbox25,50000E-10,008,00000E-10,004,30000E-10,00
0.0 SBWOdeSolver5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 VCell5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 copasi5,50000E-10,008,00000E-10,004,30000E-10,00
0.0 edu.kgi.roadRunner5,50000E-10,008,00000E-10,004,30000E-10,00
0.2 BioUML5,64893E-10,008,24702E-10,004,32593E-10,00
0.2 ByoDyn5,64893E-10,008,24702E-10,004,32593E-10,00
0.2 MathSBML5,64893E-10,008,24702E-10,004,32593E-10,00
0.2 SBToolbox25,64904E-10,008,24708E-10,004,32587E-10,00
0.2 SBWOdeSolver5,64893E-10,008,24701E-10,004,32593E-10,00
0.2 VCell5,64893E-10,008,24702E-10,004,32593E-10,00
0.2 copasi5,64893E-10,008,24702E-10,004,32593E-10,00
0.2 edu.kgi.roadRunner5,64893E-10,008,24702E-10,004,32593E-10,00
0.4 BioUML5,82408E-10,008,43304E-10,004,35592E-10,00
0.4 ByoDyn5,82408E-10,008,43304E-10,004,35592E-10,00
0.4 MathSBML5,82408E-10,008,43304E-10,004,35592E-10,00
0.4 SBToolbox25,82452E-10,008,43399E-10,004,35604E-10,00
0.4 SBWOdeSolver5,82408E-10,008,43304E-10,004,35592E-10,00
0.4 VCell5,82408E-10,008,43304E-10,004,35592E-10,00
0.4 copasi5,82407E-10,008,43304E-10,004,35592E-10,00
0.4 edu.kgi.roadRunner5,82408E-10,008,43304E-10,004,35592E-10,00
0.6 BioUML6,02799E-10,008,55171E-10,004,38866E-10,00
0.6 ByoDyn6,02799E-10,008,55171E-10,004,38866E-10,00
0.6 MathSBML6,02799E-10,008,55171E-10,004,38866E-10,00
0.6 SBToolbox26,02845E-10,008,55165E-10,004,38820E-10,00
0.6 SBWOdeSolver6,02798E-10,008,55172E-10,004,38866E-10,00
0.6 VCell6,02799E-10,008,55171E-10,004,38866E-10,00
0.6 copasi6,02798E-10,008,55172E-10,004,38866E-10,00
0.6 edu.kgi.roadRunner6,02799E-10,008,55171E-10,004,38866E-10,00
0.8 BioUML6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 ByoDyn6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 MathSBML6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 SBToolbox26,26081E-10,008,59617E-10,004,42137E-10,00
0.8 SBWOdeSolver6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 VCell6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 copasi6,26125E-10,008,59858E-10,004,42273E-10,00
0.8 edu.kgi.roadRunner6,26125E-10,008,59858E-10,004,42273E-10,00
1.0 BioUML6,52238E-10,008,57120E-10,004,45667E-10,00
1.0 ByoDyn6,52238E-10,008,57120E-10,004,45667E-10,00
1.0 MathSBML6,52238E-10,008,57120E-10,004,45667E-10,00
1.0 SBToolbox26,52313E-10,008,56841E-10,004,45553E-10,00
1.0 SBWOdeSolver6,52238E-10,008,57119E-10,004,45667E-10,00
1.0 VCell6,52238E-10,008,57120E-10,004,45667E-10,00
1.0 copasi6,52238E-10,008,57120E-10,004,45667E-10,00
1.0 edu.kgi.roadRunner6,52238E-10,008,57120E-10,004,45667E-10,00
1.2 BioUML6,80767E-10,008,46829E-10,004,48899E-10,00
1.2 ByoDyn6,80767E-10,008,46829E-10,004,48899E-10,00
1.2 MathSBML6,80767E-10,008,46829E-10,004,48899E-10,00
1.2 SBToolbox26,80447E-10,008,46712E-10,004,48702E-10,00
1.2 SBWOdeSolver6,80767E-10,008,46828E-10,004,48899E-10,00
1.2 VCell6,80767E-10,008,46829E-10,004,48899E-10,00
1.2 copasi6,80767E-10,008,46829E-10,004,48899E-10,00
1.2 edu.kgi.roadRunner6,80767E-10,008,46829E-10,004,48899E-10,00
1.4 BioUML7,11105E-10,008,28872E-10,004,51819E-10,00
1.4 ByoDyn7,11105E-10,008,28872E-10,004,51819E-10,00
1.4 MathSBML7,11105E-10,008,28872E-10,004,51819E-10,00
1.4 SBToolbox27,10157E-10,138,29157E-10,004,51502E-10,00
1.4 SBWOdeSolver7,11104E-10,008,28871E-10,004,51819E-10,00
1.4 VCell7,11105E-10,008,28872E-10,004,51819E-10,00
1.4 copasi7,11104E-10,008,28872E-10,004,51819E-10,00
1.4 edu.kgi.roadRunner7,11105E-10,008,28872E-10,004,51819E-10,00
1.6 BioUML7,42390E-10,008,03137E-10,004,54277E-10,00
1.6 ByoDyn7,42390E-10,008,03137E-10,004,54277E-10,00
1.6 MathSBML7,42390E-10,008,03137E-10,004,54276E-10,00
1.6 SBToolbox27,41320E-10,148,03982E-10,114,53952E-10,00
1.6 SBWOdeSolver7,42389E-10,008,03137E-10,004,54276E-10,00
1.6 VCell7,42390E-10,008,03137E-10,004,54277E-10,00
1.6 copasi7,42390E-10,008,03138E-10,004,54277E-10,00
1.6 edu.kgi.roadRunner7,42390E-10,008,03137E-10,004,54277E-10,00
1.8 BioUML7,73500E-10,007,69600E-10,004,56121E-10,00
1.8 ByoDyn7,73500E-10,007,69600E-10,004,56121E-10,00
1.8 MathSBML7,73500E-10,007,69600E-10,004,56121E-10,00
1.8 SBToolbox27,72018E-10,197,70979E-10,184,55786E-10,00
1.8 SBWOdeSolver7,73499E-10,007,69601E-10,004,56121E-10,00
1.8 VCell7,73500E-10,007,69600E-10,004,56121E-10,00
1.8 copasi7,73500E-10,007,69603E-10,004,56121E-10,00
1.8 edu.kgi.roadRunner7,73500E-10,007,69600E-10,004,56121E-10,00
2.0 BioUML8,03064E-10,007,28475E-10,004,57205E-10,00
2.0 ByoDyn8,03064E-10,007,28475E-10,004,57205E-10,00
2.0 MathSBML8,03064E-10,007,28475E-10,004,57205E-10,00
2.0 SBToolbox28,01586E-10,187,30362E-10,264,56894E-10,00
2.0 SBWOdeSolver8,03063E-10,007,28477E-10,004,57205E-10,00
2.0 VCell8,03064E-10,007,28475E-10,004,57205E-10,00
2.0 copasi8,03064E-10,007,28478E-10,004,57205E-10,00
2.0 edu.kgi.roadRunner8,03064E-10,007,28475E-10,004,57205E-10,00
2.2 BioUML8,29538E-10,006,80347E-10,004,57389E-10,00
2.2 ByoDyn8,29538E-10,006,80347E-10,004,57389E-10,00
2.2 MathSBML8,29539E-10,006,80347E-10,004,57389E-10,00
2.2 SBToolbox28,27852E-10,206,83024E-10,394,57094E-10,00
2.2 SBWOdeSolver8,29539E-10,006,80348E-10,004,57389E-10,00
2.2 VCell8,29538E-10,006,80347E-10,004,57389E-10,00
2.2 copasi8,29540E-10,006,80349E-10,004,57389E-10,00
2.2 edu.kgi.roadRunner8,29538E-10,006,80347E-10,004,57389E-10,00
2.4 BioUML8,51405E-10,006,26252E-10,004,56552E-10,00
2.4 ByoDyn8,51405E-10,006,26252E-10,004,56552E-10,00
2.4 MathSBML8,51405E-10,006,26252E-10,004,56552E-10,00
2.4 SBToolbox28,49897E-10,186,29462E-10,514,56314E-10,00
2.4 SBWOdeSolver8,51407E-10,006,26252E-10,004,56552E-10,00
2.4 VCell8,51405E-10,006,26252E-10,004,56552E-10,00
2.4 copasi8,51407E-10,006,26253E-10,004,56552E-10,00
2.4 edu.kgi.roadRunner8,51405E-10,006,26252E-10,004,56552E-10,00
2.6 BioUML8,67480E-10,005,67662E-10,004,54597E-10,00
2.6 ByoDyn8,67480E-10,005,67662E-10,004,54597E-10,00
2.6 MathSBML8,67480E-10,005,67662E-10,004,54597E-10,00
2.6 SBToolbox28,66098E-10,165,71665E-10,704,54421E-10,00
2.6 SBWOdeSolver8,67485E-10,005,67662E-10,004,54597E-10,00
2.6 VCell8,67480E-10,005,67662E-10,004,54597E-10,00
2.6 copasi8,67482E-10,005,67663E-10,004,54598E-10,00
2.6 edu.kgi.roadRunner8,67480E-10,005,67662E-10,004,54597E-10,00
2.8 BioUML8,77229E-10,005,06353E-10,004,51465E-10,00
2.8 ByoDyn8,77229E-10,005,06353E-10,004,51465E-10,00
2.8 MathSBML8,77229E-10,005,06353E-10,004,51465E-10,00
2.8 SBToolbox28,76102E-10,135,10742E-10,874,51370E-10,00
2.8 SBWOdeSolver8,77232E-10,005,06350E-10,004,51465E-10,00
2.8 VCell8,77229E-10,005,06353E-10,004,51465E-10,00
2.8 copasi8,77230E-10,005,06352E-10,004,51465E-10,00
2.8 edu.kgi.roadRunner8,77229E-10,005,06353E-10,004,51465E-10,00
3.0 BioUML8,80798E-10,004,44201E-10,004,47130E-10,00
3.0 ByoDyn8,80798E-10,004,44201E-10,004,47130E-10,00
3.0 MathSBML8,80798E-10,004,44201E-10,004,47130E-10,00
3.0 SBToolbox28,79958E-10,004,49033E-11,14,47132E-10,00
3.0 SBWOdeSolver8,80797E-10,004,44197E-10,004,47130E-10,00
3.0 VCell8,80798E-10,004,44201E-10,004,47130E-10,00
3.0 copasi8,80799E-10,004,44200E-10,004,47130E-10,00
3.0 edu.kgi.roadRunner8,80798E-10,004,44201E-10,004,47130E-10,00
3.2 BioUML8,78683E-10,003,83033E-10,004,41606E-10,00
3.2 ByoDyn8,78683E-10,003,83033E-10,004,41606E-10,00
3.2 MathSBML8,78683E-10,003,83033E-10,004,41606E-10,00
3.2 SBToolbox28,78170E-10,003,88127E-11,34,41706E-10,00
3.2 SBWOdeSolver8,78679E-10,003,83031E-10,004,41606E-10,00
3.2 VCell8,78683E-10,003,83033E-10,004,41606E-10,00
3.2 copasi8,78683E-10,003,83032E-10,004,41606E-10,00
3.2 edu.kgi.roadRunner8,78683E-10,003,83033E-10,004,41606E-10,00
3.4 BioUML8,71272E-10,003,24601E-10,004,34942E-10,00
3.4 ByoDyn8,71272E-10,003,24601E-10,004,34942E-10,00
3.4 MathSBML8,71272E-10,003,24601E-10,004,34942E-10,00
3.4 SBToolbox28,71123E-10,003,29682E-11,64,35149E-10,00
3.4 SBWOdeSolver8,71268E-10,003,24600E-10,004,34942E-10,00
3.4 VCell8,71272E-10,003,24601E-10,004,34942E-10,00
3.4 copasi8,71272E-10,003,24600E-10,004,34943E-10,00
3.4 edu.kgi.roadRunner8,71272E-10,003,24601E-10,004,34942E-10,00
3.6 BioUML8,58580E-10,002,70652E-10,004,27223E-10,00
3.6 ByoDyn8,58580E-10,002,70652E-10,004,27223E-10,00
3.6 MathSBML8,58580E-10,002,70652E-10,004,27223E-10,00
3.6 SBToolbox28,58836E-10,002,75822E-11,94,27548E-10,00
3.6 SBWOdeSolver8,58577E-10,002,70653E-10,004,27223E-10,00
3.6 VCell8,58580E-10,002,70652E-10,004,27223E-10,00
3.6 copasi8,58581E-10,002,70651E-10,004,27224E-10,00
3.6 edu.kgi.roadRunner8,58580E-10,002,70652E-10,004,27223E-10,00
3.8 BioUML8,40214E-10,002,23040E-10,004,18569E-10,00
3.8 ByoDyn8,40214E-10,002,23040E-10,004,18569E-10,00
3.8 MathSBML8,40214E-10,002,23040E-10,004,18569E-10,00
3.8 SBToolbox28,41025E-10,002,27806E-12,14,19001E-10,10
3.8 SBWOdeSolver8,40212E-10,002,23042E-10,004,18569E-10,00
3.8 VCell8,40214E-10,002,23040E-10,004,18569E-10,00
3.8 copasi8,40215E-10,002,23039E-10,004,18569E-10,00
3.8 edu.kgi.roadRunner8,40214E-10,002,23040E-10,004,18569E-10,00
4.0 BioUML8,15469E-10,001,83757E-10,004,09137E-10,00
4.0 ByoDyn8,15469E-10,001,83757E-10,004,09137E-10,00
4.0 MathSBML8,15469E-10,001,83757E-10,004,09137E-10,00
4.0 SBToolbox28,16888E-10,171,88152E-12,44,09682E-10,13
4.0 SBWOdeSolver8,15467E-10,001,83759E-10,004,09137E-10,00
4.0 VCell8,15469E-10,001,83757E-10,004,09137E-10,00
4.0 copasi8,15470E-10,001,83755E-10,004,09137E-10,00
4.0 edu.kgi.roadRunner8,15469E-10,001,83757E-10,004,09137E-10,00
4.2 BioUML7,83486E-10,001,54826E-10,003,99125E-10,00
4.2 ByoDyn7,83486E-10,001,54826E-10,003,99125E-10,00
4.2 MathSBML7,83486E-10,001,54826E-10,003,99125E-10,00
4.2 SBToolbox27,85599E-10,271,58510E-12,43,99770E-10,16
4.2 SBWOdeSolver7,83484E-10,001,54828E-10,003,99125E-10,00
4.2 VCell7,83486E-10,001,54826E-10,003,99125E-10,00
4.2 copasi7,83487E-10,001,54824E-10,003,99125E-10,00
4.2 edu.kgi.roadRunner7,83486E-10,001,54826E-10,003,99125E-10,00
4.4 BioUML7,43423E-10,001,38029E-10,003,88767E-10,00
4.4 ByoDyn7,43423E-10,001,38029E-10,003,88767E-10,00
4.4 MathSBML7,43423E-10,001,38029E-10,003,88767E-10,00
4.4 SBToolbox27,46319E-10,391,40836E-12,03,89489E-10,19
4.4 SBWOdeSolver7,43421E-10,001,38032E-10,003,88767E-10,00
4.4 VCell7,43423E-10,001,38029E-10,003,88767E-10,00
4.4 copasi7,43425E-10,001,38027E-10,003,88767E-10,00
4.4 edu.kgi.roadRunner7,43423E-10,001,38029E-10,003,88767E-10,00
4.6 BioUML6,94625E-10,001,34683E-10,003,78325E-10,00
4.6 ByoDyn6,94625E-10,001,34683E-10,003,78325E-10,00
4.6 MathSBML6,94625E-10,001,34683E-10,003,78325E-10,00
4.6 SBToolbox26,98315E-10,531,36475E-11,33,79119E-10,21
4.6 SBWOdeSolver6,94623E-10,001,34686E-10,003,78325E-10,00
4.6 VCell6,94625E-10,001,34683E-10,003,78325E-10,00
4.6 copasi6,94627E-10,001,34680E-10,003,78325E-10,00
4.6 edu.kgi.roadRunner6,94625E-10,001,34683E-10,003,78325E-10,00
4.8 BioUML6,36761E-10,001,45882E-10,003,68085E-10,00
4.8 ByoDyn6,36761E-10,001,45882E-10,003,68085E-10,00
4.8 MathSBML6,36761E-10,001,45882E-10,003,68085E-10,00
4.8 SBToolbox26,41308E-10,711,46468E-10,403,68910E-10,22
4.8 SBWOdeSolver6,36759E-10,001,45885E-10,003,68085E-10,00
4.8 VCell6,36761E-10,001,45882E-10,003,68085E-10,00
4.8 copasi6,36763E-10,001,45879E-10,003,68085E-10,00
4.8 edu.kgi.roadRunner6,36761E-10,001,45882E-10,003,68085E-10,00
5.0 BioUML5,69941E-10,001,73131E-10,003,58349E-10,00
5.0 ByoDyn5,69941E-10,001,73131E-10,003,58349E-10,00
5.0 MathSBML5,69941E-10,001,73131E-10,003,58349E-10,00
5.0 SBToolbox25,75385E-10,951,72180E-10,553,59175E-10,23
5.0 SBWOdeSolver5,69939E-10,001,73135E-10,003,58349E-10,00
5.0 VCell5,69941E-10,001,73131E-10,003,58349E-10,00
5.0 copasi5,69943E-10,001,73128E-10,003,58349E-10,00
5.0 edu.kgi.roadRunner5,69941E-10,001,73131E-10,003,58349E-10,00
5.2 BioUML4,94821E-10,002,18652E-10,003,49457E-10,00
5.2 ByoDyn4,94821E-10,002,18652E-10,003,49457E-10,00
5.2 MathSBML4,94821E-10,002,18652E-10,003,49457E-10,00
5.2 SBToolbox25,01224E-11,32,16067E-11,23,50288E-10,24
5.2 SBWOdeSolver4,94820E-10,002,18656E-10,003,49457E-10,00
5.2 VCell4,94821E-10,002,18652E-10,003,49457E-10,00
5.2 copasi4,94823E-10,002,18648E-10,003,49457E-10,00
5.2 edu.kgi.roadRunner4,94821E-10,002,18652E-10,003,49457E-10,00
5.4 BioUML4,12748E-10,002,85023E-10,003,41790E-10,00
5.4 ByoDyn4,12748E-10,002,85023E-10,003,41790E-10,00
5.4 MathSBML4,12748E-10,002,85023E-10,003,41790E-10,00
5.4 SBToolbox24,20048E-11,82,80553E-11,63,42589E-10,23
5.4 SBWOdeSolver4,12747E-10,002,85028E-10,003,41790E-10,00
5.4 VCell4,12748E-10,002,85023E-10,003,41790E-10,00
5.4 copasi4,12749E-10,002,85019E-10,003,41790E-10,00
5.4 edu.kgi.roadRunner4,12748E-10,002,85023E-10,003,41790E-10,00
5.6 BioUML3,25970E-10,003,74519E-10,003,35772E-10,00
5.6 ByoDyn3,25970E-10,003,74519E-10,003,35772E-10,00
5.6 MathSBML3,25969E-10,003,74519E-10,003,35772E-10,00
5.6 SBToolbox23,33737E-12,43,67837E-11,83,36466E-10,21
5.6 SBWOdeSolver3,25970E-10,003,74524E-10,003,35772E-10,00
5.6 VCell3,25970E-10,003,74519E-10,003,35772E-10,00
5.6 copasi3,25971E-10,003,74514E-10,003,35771E-10,00
5.6 edu.kgi.roadRunner3,25970E-10,003,74519E-10,003,35772E-10,00
5.8 BioUML2,38067E-10,004,88437E-10,003,31856E-10,00
5.8 ByoDyn2,38067E-10,004,88437E-10,003,31856E-10,00
5.8 MathSBML2,38067E-10,004,88437E-10,003,31856E-10,00
5.8 SBToolbox22,46249E-13,44,79444E-11,83,32447E-10,18
5.8 SBWOdeSolver2,38069E-10,004,88442E-10,003,31857E-10,00
5.8 VCell2,38067E-10,004,88437E-10,003,31856E-10,00
5.8 copasi2,38068E-10,004,88432E-10,003,31856E-10,00
5.8 edu.kgi.roadRunner2,38067E-10,004,88437E-10,003,31856E-10,00
6.0 BioUML1,54958E-10,006,26325E-10,003,30499E-10,00
6.0 ByoDyn1,54958E-10,006,26325E-10,003,30499E-10,00
6.0 MathSBML1,54958E-10,006,26325E-10,003,30499E-10,00
6.0 SBToolbox21,62578E-14,96,15060E-11,83,30890E-10,12
6.0 SBWOdeSolver1,54964E-10,006,26328E-10,003,30500E-10,00
6.0 VCell1,54958E-10,006,26325E-10,003,30499E-10,00
6.0 copasi1,54959E-10,006,26319E-10,003,30499E-10,00
6.0 edu.kgi.roadRunner1,54958E-10,006,26325E-10,003,30499E-10,00
6.2 BioUML8,73553E-20,007,84378E-10,003,32111E-10,00
6.2 ByoDyn8,73553E-20,007,84378E-10,003,32111E-10,00
6.2 MathSBML8,73551E-20,007,84378E-10,003,32111E-10,00
6.2 SBToolbox29,30573E-26,57,71310E-11,73,32257E-10,00
6.2 SBWOdeSolver8,73640E-20,007,84376E-10,003,32112E-10,00
6.2 VCell8,73553E-20,007,84378E-10,003,32111E-10,00
6.2 copasi8,73550E-20,007,84372E-10,003,32111E-10,00
6.2 edu.kgi.roadRunner8,73553E-20,007,84378E-10,003,32111E-10,00
6.4 BioUML5,11252E-20,009,48767E-10,003,36946E-10,00
6.4 ByoDyn5,11252E-20,009,48767E-10,003,36946E-10,00
6.4 MathSBML5,11251E-20,009,48767E-10,003,36946E-10,00
6.4 SBToolbox25,33938E-24,49,36322E-11,33,36832E-10,00
6.4 SBWOdeSolver5,11336E-20,009,48739E-10,003,36946E-10,00
6.4 VCell5,11252E-20,009,48767E-10,003,36946E-10,00
6.4 copasi5,11245E-20,009,48760E-10,003,36945E-10,00
6.4 edu.kgi.roadRunner5,11252E-20,009,48767E-10,003,36946E-10,00
6.6 BioUML4,44421E-20,009,99293E-10,003,44136E-10,00
6.6 ByoDyn4,44421E-20,009,99293E-10,003,44136E-10,00
6.6 MathSBML4,44421E-20,009,99293E-10,003,44136E-10,00
6.6 SBToolbox24,47709E-20,749,99280E-10,003,43926E-10,00
6.6 SBWOdeSolver4,44438E-20,009,99291E-10,003,44136E-10,00
6.6 VCell4,44421E-20,009,99293E-10,003,44136E-10,00
6.6 copasi4,44415E-20,009,99293E-10,003,44136E-1