Test: BIOMD0000000080.xml - Ok

test: BIOMD0000000080.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000080.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL1173806337.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: D  DRG_GTP  GDP  G_GTP  DR  R  DRG_GDP  GTP  G_GDP  DRG 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation D DRG_GTP GDP G_GTP DR R DRG_GDP GTP G_GDP DRG
var error var error var error var error var error var error var error var error var error var error
0.0 BioUML3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 ByoDyn3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 Jarnac3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 MathSBML3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 Oscill8 Core - - 0,00000E00,000,00000E00,00 - - 0,00000E00,00 - - 0,00000E00,00 - - 1,00000E-60,000,00000E00,00
0.0 SBToolbox23,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 SBWOdeSolver3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 VCell3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 copasi3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 edu.kgi.roadRunner3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.0 jsim3,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-100,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.2 BioUML3,09999E-50,002,63657E-110,006,03853E-110,002,35718E-120,002,95758E-130,001,95741E-140,004,19636E-110,009,99997E-60,009,99898E-70,003,13553E-110,00
0.2 ByoDyn3,09999E-50,002,63657E-110,006,03853E-110,002,35718E-120,002,97394E-130,001,88530E-140,004,19627E-110,009,99997E-60,009,99898E-70,003,13554E-110,00
0.2 Jarnac3,09999E-50,002,63657E-110,006,03853E-110,002,35718E-120,002,97394E-130,001,88530E-140,004,19627E-110,009,99997E-60,009,99898E-70,003,13554E-110,00
0.2 MathSBML3,09999E-50,002,67608E-110,006,11363E-110,002,26566E-120,001,66366E-130,004,96837E-160,004,12859E-110,009,99997E-60,009,99898E-70,003,17864E-110,00
0.2 Oscill8 Core - - 2,55860E-110,005,88528E-110,00 - - 3,02051E-130,00 - - 4,35179E-110,00 - - 9,99898E-70,003,05662E-110,00
0.2 SBToolbox23,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.2 SBWOdeSolver3,09999E-50,002,63652E-110,006,03844E-110,002,35723E-120,002,97390E-130,001,88527E-140,004,19636E-110,009,99997E-60,009,99898E-70,003,13549E-110,00
0.2 VCell3,09999E-50,002,63654E-110,006,03847E-110,002,35721E-120,002,97391E-130,001,88528E-140,004,19633E-110,009,99997E-60,009,99898E-70,003,13551E-110,00
0.2 copasi3,09999E-50,002,64680E-110,006,05725E-110,002,33488E-120,002,98790E-130,001,92388E-140,004,17551E-110,009,99997E-60,009,99898E-70,003,14589E-110,00
0.2 edu.kgi.roadRunner3,09999E-50,002,63657E-110,006,03853E-110,002,35718E-120,002,97394E-130,001,88530E-140,004,19627E-110,009,99997E-60,009,99898E-70,003,13554E-110,00
0.2 jsim3,09999E-50,002,63657E-110,006,03852E-110,002,35717E-120,002,97394E-130,001,88530E-140,004,19628E-110,009,99997E-60,009,99898E-70,003,13553E-110,00
0.4 BioUML3,09999E-50,003,74200E-110,008,91780E-110,007,06057E-120,003,89886E-130,002,56783E-140,001,96486E-110,009,99995E-60,009,99893E-70,004,25158E-110,00
0.4 ByoDyn3,09999E-50,003,74200E-110,008,91780E-110,007,06057E-120,003,91151E-130,002,51248E-140,001,96479E-110,009,99995E-60,009,99893E-70,004,25159E-110,00
0.4 Jarnac3,09999E-50,003,74200E-110,008,91780E-110,007,06057E-120,003,91151E-130,002,51249E-140,001,96479E-110,009,99995E-60,009,99893E-70,004,25159E-110,00
0.4 MathSBML3,09999E-50,003,77961E-110,008,98572E-110,006,63380E-120,004,16911E-130,003,91836E-140,001,88618E-110,009,99995E-60,009,99894E-70,004,28860E-110,00
0.4 Oscill8 Core - - 3,69896E-110,008,82860E-110,00 - - 3,87488E-130,00 - - 2,05168E-110,00 - - 9,99893E-70,004,20814E-110,00
0.4 SBToolbox23,10000E-50,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.4 SBWOdeSolver3,09999E-50,003,74197E-110,008,91774E-110,007,06053E-120,003,91148E-130,002,51246E-140,001,96485E-110,009,99995E-60,009,99893E-70,004,25155E-110,00
0.4 VCell3,09999E-50,003,74199E-110,008,91778E-110,007,06056E-120,003,91150E-130,002,51248E-140,001,96481E-110,009,99995E-60,009,99893E-70,004,25158E-110,00
0.4 copasi3,09999E-50,003,77242E-110,008,97344E-110,007,01083E-120,003,93280E-130,002,52252E-140,001,90341E-110,009,99995E-60,009,99893E-70,004,28231E-110,00
0.4 edu.kgi.roadRunner3,09999E-50,003,74200E-110,008,91780E-110,007,06057E-120,003,91151E-130,002,51248E-140,001,96479E-110,009,99995E-60,009,99893E-70,004,25159E-110,00
0.4 jsim3,09999E-50,003,74200E-110,008,91780E-110,007,06056E-120,003,91151E-130,002,51248E-140,001,96479E-110,009,99995E-60,009,99893E-70,004,25159E-110,00
0.6 BioUML3,09999E-50,004,10848E-110,001,04460E-100,001,12772E-110,004,23888E-130,002,64823E-140,001,22488E-110,009,99994E-60,009,99889E-70,004,62160E-110,00
0.6 ByoDyn3,09999E-50,004,10848E-110,001,04460E-100,001,12772E-110,004,22237E-130,002,72044E-140,001,22498E-110,009,99994E-60,009,99889E-70,004,62160E-110,00
0.6 Jarnac3,09999E-50,004,10848E-110,001,04460E-100,001,12772E-110,004,22237E-130,002,72044E-140,001,22498E-110,009,99994E-60,009,99889E-70,004,62160E-110,00
0.6 MathSBML3,09999E-50,004,05270E-110,001,03430E-100,009,48981E-120,004,44630E-130,004,28880E-140,001,33439E-110,009,99994E-60,009,99891E-70,004,56416E-110,00
0.6 Oscill8 Core - - 4,08837E-110,001,03987E-100,00 - - 4,20525E-130,00 - - 1,26558E-110,00 - - 9,99889E-70,004,60129E-110,00
0.6 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.6 SBWOdeSolver3,09999E-50,004,10847E-110,001,04459E-100,001,12772E-110,004,22235E-130,002,72043E-140,001,22501E-110,009,99994E-60,009,99889E-70,004,62158E-110,00
0.6 VCell3,09999E-50,004,10848E-110,001,04459E-100,001,12772E-110,004,22237E-130,002,72044E-140,001,22498E-110,009,99994E-60,009,99889E-70,004,62159E-110,00
0.6 copasi3,09999E-50,004,09738E-110,001,04257E-100,001,13208E-110,004,18156E-130,002,66845E-140,001,24770E-110,009,99994E-60,009,99889E-70,004,61044E-110,00
0.6 edu.kgi.roadRunner3,09999E-50,004,10848E-110,001,04460E-100,001,12772E-110,004,22237E-130,002,72044E-140,001,22498E-110,009,99994E-60,009,99889E-70,004,62160E-110,00
0.6 jsim3,09999E-50,004,10848E-110,001,04460E-100,001,12772E-110,004,22237E-130,002,72044E-140,001,22498E-110,009,99994E-60,009,99889E-70,004,62160E-110,00
0.8 BioUML3,09999E-50,004,22998E-110,001,15262E-100,001,44565E-110,004,32954E-130,002,77144E-140,009,79681E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
0.8 ByoDyn3,09999E-50,004,22998E-110,001,15262E-100,001,44565E-110,004,32544E-130,002,78940E-140,009,79705E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
0.8 Jarnac3,09999E-50,004,22998E-110,001,15262E-100,001,44565E-110,004,32544E-130,002,78940E-140,009,79705E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
0.8 MathSBML3,09999E-50,004,01915E-110,001,11404E-100,001,15887E-110,004,23085E-130,003,17917E-140,001,40431E-110,009,99993E-60,009,99889E-70,004,53105E-110,00
0.8 Oscill8 Core - - 4,22132E-110,001,14998E-100,00 - - 4,31809E-130,00 - - 9,97193E-120,00 - - 9,99886E-70,004,73552E-110,00
0.8 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
0.8 SBWOdeSolver3,09999E-50,004,22997E-110,001,15261E-100,001,44564E-110,004,32543E-130,002,78939E-140,009,79718E-120,009,99993E-60,009,99886E-70,004,74426E-110,00
0.8 VCell3,09999E-50,004,22998E-110,001,15262E-100,001,44564E-110,004,32544E-130,002,78939E-140,009,79707E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
0.8 copasi3,09999E-50,004,21071E-110,001,14909E-100,001,45103E-110,004,29892E-130,002,76733E-140,001,01871E-110,009,99993E-60,009,99886E-70,004,72483E-110,00
0.8 edu.kgi.roadRunner3,09999E-50,004,22998E-110,001,15262E-100,001,44565E-110,004,32544E-130,002,78940E-140,009,79705E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
0.8 jsim3,09999E-50,004,22998E-110,001,15262E-100,001,44565E-110,004,32544E-130,002,78940E-140,009,79705E-120,009,99993E-60,009,99886E-70,004,74427E-110,00
1.0 BioUML3,09999E-50,004,27027E-110,001,24579E-100,001,67045E-110,004,33929E-130,002,90117E-140,008,98507E-120,009,99992E-60,009,99884E-70,004,78493E-110,00
1.0 ByoDyn3,09999E-50,004,27026E-110,001,24579E-100,001,67045E-110,004,35961E-130,002,81226E-140,008,98389E-120,009,99992E-60,009,99884E-70,004,78494E-110,00
1.0 Jarnac3,09999E-50,004,27026E-110,001,24579E-100,001,67045E-110,004,35961E-130,002,81226E-140,008,98389E-120,009,99992E-60,009,99884E-70,004,78494E-110,00
1.0 MathSBML3,09999E-50,004,11976E-110,001,21827E-100,001,39981E-110,004,23352E-130,002,73244E-140,001,20220E-110,009,99992E-60,009,99886E-70,004,63297E-110,00
1.0 Oscill8 Core - - 4,26671E-110,001,24409E-100,00 - - 4,35660E-130,00 - - 9,05563E-120,00 - - 9,99884E-70,004,78135E-110,00
1.0 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
1.0 SBWOdeSolver3,09999E-50,004,27026E-110,001,24579E-100,001,67044E-110,004,35961E-130,002,81226E-140,008,98394E-120,009,99992E-60,009,99884E-70,004,78493E-110,00
1.0 VCell3,09999E-50,004,27026E-110,001,24579E-100,001,67045E-110,004,35961E-130,002,81226E-140,008,98390E-120,009,99992E-60,009,99884E-70,004,78494E-110,00
1.0 copasi3,09999E-50,004,26305E-110,001,24447E-100,001,67568E-110,004,35523E-130,002,81032E-140,009,12931E-120,009,99992E-60,009,99884E-70,004,77765E-110,00
1.0 edu.kgi.roadRunner3,09999E-50,004,27026E-110,001,24579E-100,001,67045E-110,004,35961E-130,002,81226E-140,008,98389E-120,009,99992E-60,009,99884E-70,004,78494E-110,00
1.0 jsim3,09999E-50,004,27026E-110,001,24579E-100,001,67045E-110,004,35961E-130,002,81226E-140,008,98390E-120,009,99992E-60,009,99884E-70,004,78494E-110,00
1.2 BioUML3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,35999E-130,002,86774E-140,008,71494E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 ByoDyn3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,37094E-130,002,81984E-140,008,71431E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 Jarnac3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,37094E-130,002,81984E-140,008,71431E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 MathSBML3,09999E-50,004,23013E-110,001,32425E-100,001,57898E-110,004,33241E-130,002,81057E-140,009,79341E-120,009,99992E-60,009,99885E-70,004,74439E-110,00
1.2 Oscill8 Core - - 4,28221E-110,001,33272E-100,00 - - 4,36975E-130,00 - - 8,74279E-120,00 - - 9,99882E-70,004,79700E-110,00
1.2 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
1.2 SBWOdeSolver3,09999E-50,004,28361E-110,001,33403E-100,001,82501E-110,004,37094E-130,002,81984E-140,008,71433E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 VCell3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,37094E-130,002,81984E-140,008,71431E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 copasi3,09999E-50,004,28360E-110,001,33403E-100,001,83139E-110,004,37104E-130,002,81997E-140,008,71469E-120,009,99991E-60,009,99882E-70,004,79840E-110,00
1.2 edu.kgi.roadRunner3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,37094E-130,002,81984E-140,008,71431E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.2 jsim3,09999E-50,004,28362E-110,001,33403E-100,001,82502E-110,004,37094E-130,002,81984E-140,008,71431E-120,009,99991E-60,009,99882E-70,004,79842E-110,00
1.4 BioUML3,09999E-50,004,28804E-110,001,42065E-100,001,92991E-110,004,37611E-130,002,81619E-140,008,62485E-120,009,99991E-60,009,99881E-70,004,80290E-110,00
1.4 ByoDyn3,09999E-50,004,28804E-110,001,42065E-100,001,92991E-110,004,37470E-130,002,82235E-140,008,62494E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.4 Jarnac3,09999E-50,004,28804E-110,001,42065E-100,001,92991E-110,004,37470E-130,002,82232E-140,008,62493E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.4 MathSBML3,09999E-50,004,23766E-110,001,41143E-100,001,67726E-110,004,33573E-130,002,80540E-140,009,64157E-120,009,99991E-60,009,99884E-70,004,75202E-110,00
1.4 Oscill8 Core - - 4,28750E-110,001,41950E-100,00 - - 4,37424E-130,00 - - 8,63598E-120,00 - - 9,99881E-70,004,80234E-110,00
1.4 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
1.4 SBWOdeSolver3,09999E-50,004,28804E-110,001,42065E-100,001,92990E-110,004,37470E-130,002,82235E-140,008,62494E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.4 VCell3,09999E-50,004,28804E-110,001,42065E-100,001,92990E-110,004,37470E-130,002,82235E-140,008,62495E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.4 copasi3,09999E-50,004,29440E-110,001,42181E-100,001,94536E-110,004,38026E-130,002,82615E-140,008,49657E-120,009,99991E-60,009,99881E-70,004,80931E-110,00
1.4 edu.kgi.roadRunner3,09999E-50,004,28804E-110,001,42065E-100,001,92991E-110,004,37470E-130,002,82235E-140,008,62494E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.4 jsim3,09999E-50,004,28804E-110,001,42065E-100,001,92991E-110,004,37470E-130,002,82235E-140,008,62494E-120,009,99991E-60,009,99881E-70,004,80289E-110,00
1.6 BioUML3,09999E-50,004,28951E-110,001,50672E-100,002,00065E-110,004,37991E-130,002,80584E-140,008,59508E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 ByoDyn3,09999E-50,004,28951E-110,001,50672E-100,002,00065E-110,004,37595E-130,002,82319E-140,008,59531E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 Jarnac3,09999E-50,004,28951E-110,001,50672E-100,002,00065E-110,004,37594E-130,002,82312E-140,008,59530E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 MathSBML3,09999E-50,004,23773E-110,001,49725E-100,001,76966E-110,004,33210E-130,002,79418E-140,009,64061E-120,009,99990E-60,009,99883E-70,004,75210E-110,00
1.6 Oscill8 Core - - 4,28930E-110,001,50563E-100,00 - - 4,37577E-130,00 - - 8,59952E-120,00 - - 9,99880E-70,004,80417E-110,00
1.6 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
1.6 SBWOdeSolver3,09999E-50,004,28951E-110,001,50672E-100,002,00064E-110,004,37594E-130,002,82319E-140,008,59531E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 VCell3,09999E-50,004,28951E-110,001,50672E-100,002,00064E-110,004,37595E-130,002,82319E-140,008,59531E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 copasi3,09999E-50,004,29537E-110,001,50779E-100,002,01982E-110,004,38093E-130,002,82652E-140,008,47705E-120,009,99990E-60,009,99880E-70,004,81029E-110,00
1.6 edu.kgi.roadRunner3,09999E-50,004,28951E-110,001,50672E-100,002,00065E-110,004,37595E-130,002,82319E-140,008,59531E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.6 jsim3,09999E-50,004,28951E-110,001,50672E-100,002,00065E-110,004,37595E-130,002,82319E-140,008,59531E-120,009,99990E-60,009,99880E-70,004,80438E-110,00
1.8 BioUML3,09999E-50,004,28999E-110,001,59261E-100,002,04821E-110,004,37449E-130,002,83165E-140,008,58560E-120,009,99989E-60,009,99880E-70,004,80487E-110,00
1.8 ByoDyn3,09999E-50,004,28999E-110,001,59261E-100,002,04821E-110,004,37636E-130,002,82346E-140,008,58549E-120,009,99989E-60,009,99880E-70,004,80487E-110,00
1.8 Jarnac3,09999E-50,004,28999E-110,001,59261E-100,002,04820E-110,004,37635E-130,002,82339E-140,008,58547E-120,009,99989E-60,009,99880E-70,004,80487E-110,00
1.8 MathSBML3,09999E-50,004,27495E-110,001,58986E-100,001,87938E-110,004,36372E-130,002,81522E-140,008,88914E-120,009,99989E-60,009,99882E-70,004,78968E-110,00
1.8 Oscill8 Core - - 4,28991E-110,001,59155E-100,00 - - 4,37629E-130,00 - - 8,58707E-120,00 - - 9,99880E-70,004,80479E-110,00
1.8 SBToolbox23,10000E-50,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-60,000,00000E00,00
1.8 SBWOdeSolver3,09999E-50,004,28999E-110,001,59261E-100,002,04820E-110,004,37636E-130,002,82346E-140,008,58549E-120,009,99989E-60,009,99880E-70,004,80487E-110,00
1.8 VCell3,09999E-50,004,28999E-110,001,59261E-100,002,04820E-110,004,37636E-130,002,82346E-14