Test: BIOMD0000000081.xml - Ok

test: BIOMD0000000081.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000081.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4662889298.JPG

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: ATPSat300  GGDPAlF4_M  G_M  PIP_M  ATP_C  GGTPgSMg_M  fGactive  GGDP_M  KCNQsites_M  GGTP_M  GTPgS_C  GDPbS_C  AlF4_C  MgSat10  ip3_C  PIP2_M  MgSat20  GGDPAlF4Mg_M  Gactive  GTP_C  GGDPbS_M  I_KCNQ  ATPSat1000  OxoSat  PI_M  GGTPgS_M  GGTPMg_M  GDP_C  PIP2xKCNQ_M  oxoM_EX 
Simulators: BioUML  ByoDyn  MathSBML  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation ATPSat300 GGDPAlF4_M G_M PIP_M ATP_C GGTPgSMg_M fGactive GGDP_M KCNQsites_M GGTP_M GTPgS_C GDPbS_C AlF4_C MgSat10 ip3_C PIP2_M MgSat20 GGDPAlF4Mg_M Gactive GTP_C GGDPbS_M I_KCNQ ATPSat1000 OxoSat PI_M GGTPgS_M GGTPMg_M GDP_C PIP2xKCNQ_M oxoM_EX
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML9,09105E-10,000,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,005,00000E-40,002,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,80000E-10,005,00000E30,009,90566E-10,000,00000E00,001,00000E-10,009,55391E10,000,00000E00,009,56188E-10,007,50031E-10,001,25000E-60,002,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.0 ByoDyn9,09105E-10,000,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,005,00000E-40,002,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,80000E-10,005,00000E30,009,90566E-10,000,00000E00,001,00000E-10,009,55391E10,000,00000E00,009,56188E-10,007,50031E-10,001,25000E-60,002,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.0 MathSBML - - 0,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,00 - - 2,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,80000E-10,005,00000E30,00 - - 0,00000E00,00 - - 9,55391E10,000,00000E00,00 - - - - - - 2,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.0 SBToolbox29,09100E-10,000,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,005,00000E-40,002,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,000,00000E00,009,96210E-10,004,80000E-10,005,00000E30,009,90570E-10,000,00000E00,001,00000E-10,009,55390E10,000,00000E00,009,56190E-10,007,50030E-10,001,25000E-60,002,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.0 SBWOdeSolver - - 0,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,00 - - 2,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,80000E-10,005,00000E30,00 - - 0,00000E00,00 - - - - 0,00000E00,00 - - - - - - 2,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,00 - -
0.0 copasi - - 0,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,00 - - 2,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,001,45962E-170,00 - - 4,80000E-10,005,00000E30,00 - - 1,47911E-140,00 - - 9,55391E10,000,00000E00,00 - - - - - - 2,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.0 edu.kgi.roadRunner - - 0,00000E00,006,50000E-20,001,15000E30,003,00000E30,000,00000E00,00 - - 2,00000E20,006,70000E00,004,80000E-20,000,00000E00,000,00000E00,001,68187E-170,00 - - 4,80000E-10,005,00000E30,00 - - -3,87190E-150,00 - - 9,55391E10,000,00000E00,00 - - - - - - 2,00000E50,000,00000E00,001,00000E-10,000,00000E00,003,33000E10,000,00000E00,00
0.2 BioUML9,09104E-10,000,00000E00,004,77832E-30,001,14550E30,002,99998E30,000,00000E00,007,31521E-40,002,00006E20,006,69121E00,005,63920E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,58485E-10,005,00082E30,009,90566E-10,000,00000E00,001,46304E-10,009,55465E10,000,00000E00,009,56642E-10,007,50030E-10,001,25000E-60,001,99997E50,000,00000E00,001,46304E-10,003,98932E-50,003,33088E10,000,00000E00,00
0.2 ByoDyn9,09104E-10,000,00000E00,004,77832E-30,001,14550E30,002,99998E30,000,00000E00,007,31521E-40,002,00006E20,006,69121E00,005,63920E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,58485E-10,005,00082E30,009,90566E-10,000,00000E00,001,46304E-10,009,55465E10,000,00000E00,009,56642E-10,007,50030E-10,001,25000E-60,001,99997E50,000,00000E00,001,46304E-10,003,98932E-50,003,33088E10,000,00000E00,00
0.2 MathSBML - - 0,00000E00,004,77832E-30,001,14550E30,002,99998E30,000,00000E00,00 - - 2,00006E20,006,69121E00,005,63920E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,58485E-10,005,00082E30,00 - - 0,00000E00,00 - - 9,55465E10,000,00000E00,00 - - - - - - 1,99997E50,000,00000E00,001,46304E-10,003,98932E-50,003,33088E10,000,00000E00,00
0.2 SBToolbox29,09100E-10,000,00000E00,004,77707E-30,001,14550E30,003,00000E30,000,00000E00,007,31571E-40,002,00010E20,006,69121E00,005,63868E-20,000,00000E00,000,00000E00,000,00000E00,009,96210E-10,004,58481E-10,005,00080E30,009,90570E-10,000,00000E00,001,46310E-10,009,55470E10,000,00000E00,009,56640E-10,007,50030E-10,001,25000E-60,002,00000E50,000,00000E00,001,46310E-10,003,98931E-50,003,33090E10,000,00000E00,00
0.2 SBWOdeSolver - - 0,00000E00,004,77834E-30,001,14550E30,002,99998E30,000,00000E00,00 - - 2,00006E20,006,69121E00,005,63929E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,58485E-10,005,00082E30,00 - - 0,00000E00,00 - - - - 0,00000E00,00 - - - - - - 1,99997E50,000,00000E00,001,46303E-10,003,98932E-50,003,33088E10,00 - -
0.2 copasi - - -1,32533E-200,004,77832E-30,001,14550E30,002,99998E30,000,00000E00,00 - - 2,00006E20,006,69121E00,005,63920E-20,000,00000E00,000,00000E00,00-5,87111E-170,00 - - 4,58485E-10,005,00082E30,00 - - 8,67356E-140,00 - - 9,55465E10,000,00000E00,00 - - - - - - 1,99997E50,000,00000E00,001,46304E-10,003,98932E-50,003,33088E10,000,00000E00,00
0.2 edu.kgi.roadRunner - - -1,41537E-200,004,77832E-30,001,14550E30,002,99998E30,000,00000E00,00 - - 2,00006E20,006,69121E00,005,63920E-20,000,00000E00,000,00000E00,00-1,33411E-160,00 - - 4,58485E-10,005,00082E30,00 - - 1,39361E-130,00 - - 9,55465E10,000,00000E00,00 - - - - - - 1,99997E50,000,00000E00,001,46304E-10,003,98932E-50,003,33088E10,000,00000E00,00
0.4 BioUML9,09104E-10,000,00000E00,004,72898E-30,001,14106E30,002,99997E30,000,00000E00,007,50776E-40,002,00019E20,006,68458E00,003,87755E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,38755E-10,005,00103E30,009,90566E-10,000,00000E00,001,50155E-10,009,55539E10,000,00000E00,009,56985E-10,007,50029E-10,001,25000E-60,001,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,000,00000E00,00
0.4 ByoDyn9,09104E-10,000,00000E00,004,72898E-30,001,14106E30,002,99997E30,000,00000E00,007,50776E-40,002,00019E20,006,68458E00,003,87755E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,38755E-10,005,00103E30,009,90566E-10,000,00000E00,001,50155E-10,009,55539E10,000,00000E00,009,56985E-10,007,50029E-10,001,25000E-60,001,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,000,00000E00,00
0.4 MathSBML - - 0,00000E00,004,72898E-30,001,14106E30,002,99997E30,000,00000E00,00 - - 2,00019E20,006,68458E00,003,87755E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,38755E-10,005,00103E30,00 - - 0,00000E00,00 - - 9,55539E10,000,00000E00,00 - - - - - - 1,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,000,00000E00,00
0.4 SBToolbox29,09100E-10,000,00000E00,004,72894E-30,001,14101E30,003,00000E30,000,00000E00,007,51019E-40,002,00020E20,006,68461E00,003,87360E-20,100,00000E00,000,00000E00,000,00000E00,009,96210E-10,004,38758E-10,005,00100E30,009,90570E-10,000,00000E00,001,50200E-10,009,55540E10,000,00000E00,009,56989E-10,007,50030E-10,001,25000E-60,001,99990E50,000,00000E00,001,50200E-10,007,97882E-50,003,33150E10,000,00000E00,00
0.4 SBWOdeSolver - - 0,00000E00,004,72899E-30,001,14106E30,002,99997E30,000,00000E00,00 - - 2,00019E20,006,68458E00,003,87761E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,38755E-10,005,00103E30,00 - - 0,00000E00,00 - - - - 0,00000E00,00 - - - - - - 1,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,00 - -
0.4 copasi - - -1,20374E-200,004,72898E-30,001,14106E30,002,99997E30,000,00000E00,00 - - 2,00019E20,006,68458E00,003,87756E-20,000,00000E00,000,00000E00,00-4,81551E-170,00 - - 4,38755E-10,005,00103E30,00 - - 6,84945E-140,00 - - 9,55539E10,000,00000E00,00 - - - - - - 1,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,000,00000E00,00
0.4 edu.kgi.roadRunner - - 2,06649E-200,004,72898E-30,001,14106E30,002,99997E30,000,00000E00,00 - - 2,00019E20,006,68458E00,003,87755E-20,000,00000E00,000,00000E00,005,80780E-160,00 - - 4,38755E-10,005,00103E30,00 - - -5,67935E-130,00 - - 9,55539E10,000,00000E00,00 - - - - - - 1,99994E50,000,00000E00,001,50155E-10,007,97886E-50,003,33154E10,000,00000E00,00
0.6 BioUML9,09103E-10,000,00000E00,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,007,13049E-40,002,00032E20,006,67960E00,003,37628E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,20092E-10,005,00128E30,009,90566E-10,000,00000E00,001,42610E-10,009,55613E10,000,00000E00,009,57242E-10,007,50028E-10,001,25000E-60,001,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,000,00000E00,00
0.6 ByoDyn9,09103E-10,000,00000E00,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,007,13049E-40,002,00032E20,006,67960E00,003,37628E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,20092E-10,005,00128E30,009,90566E-10,000,00000E00,001,42610E-10,009,55613E10,000,00000E00,009,57242E-10,007,50028E-10,001,25000E-60,001,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,000,00000E00,00
0.6 MathSBML - - 0,00000E00,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,00 - - 2,00032E20,006,67960E00,003,37628E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,20092E-10,005,00128E30,00 - - 0,00000E00,00 - - 9,55613E10,000,00000E00,00 - - - - - - 1,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,000,00000E00,00
0.6 SBToolbox29,09100E-10,000,00000E00,004,71792E-30,001,13662E30,003,00000E30,000,00000E00,007,13239E-40,002,00030E20,006,67961E00,003,37267E-20,110,00000E00,000,00000E00,000,00000E00,009,96210E-10,004,20095E-10,005,00130E30,009,90570E-10,000,00000E00,001,42646E-10,009,55610E10,000,00000E00,009,57239E-10,007,50030E-10,001,25000E-60,001,99990E50,000,00000E00,001,42646E-10,001,19690E-40,003,33200E10,000,00000E00,00
0.6 SBWOdeSolver - - 0,00000E00,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,00 - - 2,00032E20,006,67960E00,003,37630E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,20092E-10,005,00128E30,00 - - 0,00000E00,00 - - - - 0,00000E00,00 - - - - - - 1,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,00 - -
0.6 copasi - - -8,13499E-210,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,00 - - 2,00032E20,006,67960E00,003,37628E-20,000,00000E00,000,00000E00,00-1,62693E-170,00 - - 4,20092E-10,005,00128E30,00 - - 4,16674E-140,00 - - 9,55613E10,000,00000E00,00 - - - - - - 1,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,000,00000E00,00
0.6 edu.kgi.roadRunner - - 1,48154E-190,004,71799E-30,001,13666E30,002,99995E30,000,00000E00,00 - - 2,00032E20,006,67960E00,003,37628E-20,000,00000E00,000,00000E00,007,84095E-160,00 - - 4,20092E-10,005,00128E30,00 - - -7,76518E-130,00 - - 9,55613E10,000,00000E00,00 - - - - - - 1,99991E50,000,00000E00,001,42610E-10,001,19687E-40,003,33204E10,000,00000E00,00
0.8 BioUML9,09103E-10,000,00000E00,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,006,72140E-40,002,00042E20,006,67582E00,003,23382E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,02325E-10,005,00168E30,009,90566E-10,000,00000E00,001,34428E-10,009,55687E10,000,00000E00,009,57438E-10,007,50027E-10,001,25000E-60,001,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,000,00000E00,00
0.8 ByoDyn9,09103E-10,000,00000E00,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,006,72140E-40,002,00042E20,006,67582E00,003,23382E-20,000,00000E00,000,00000E00,000,00000E00,009,96209E-10,004,02325E-10,005,00168E30,009,90566E-10,000,00000E00,001,34428E-10,009,55687E10,000,00000E00,009,57438E-10,007,50027E-10,001,25000E-60,001,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,000,00000E00,00
0.8 MathSBML - - 0,00000E00,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,00 - - 2,00042E20,006,67582E00,003,23382E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,02325E-10,005,00168E30,00 - - 0,00000E00,00 - - 9,55687E10,000,00000E00,00 - - - - - - 1,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,000,00000E00,00
0.8 SBToolbox29,09100E-10,000,00000E00,004,71471E-30,001,13232E30,002,99990E30,000,00000E00,006,72200E-40,002,00040E20,006,67582E00,003,23149E-20,000,00000E00,000,00000E00,000,00000E00,009,96210E-10,004,02329E-10,005,00170E30,009,90570E-10,000,00000E00,001,34440E-10,009,55689E10,000,00000E00,009,57439E-10,007,50030E-10,001,25000E-60,001,99990E50,000,00000E00,001,34440E-10,001,59590E-40,003,33240E10,000,00000E00,00
0.8 SBWOdeSolver - - 0,00000E00,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,00 - - 2,00042E20,006,67582E00,003,23383E-20,000,00000E00,000,00000E00,000,00000E00,00 - - 4,02325E-10,005,00168E30,00 - - 0,00000E00,00 - - - - 0,00000E00,00 - - - - - - 1,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,00 - -
0.8 copasi - - -1,82370E-200,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,00 - - 2,00042E20,006,67582E00,003,23382E-20,000,00000E00,000,00000E00,00-7,46812E-170,00 - - 4,02325E-10,005,00168E30,00 - - 1,20282E-130,00 - - 9,55687E10,000,00000E00,00 - - - - - - 1,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,000,00000E00,00
0.8 edu.kgi.roadRunner - - 1,27636E-190,004,71475E-30,001,13231E30,002,99994E30,000,00000E00,00 - - 2,00042E20,006,67582E00,003,23382E-20,000,00000E00,000,00000E00,001,87052E-160,00 - - 4,02325E-10,005,00168E30,00 - - -1,67061E-130,00 - - 9,55687E10,000,00000E00,00 - - - - - - 1,99988E50,000,00000E00,001,34428E-10,001,59587E-40,003,33242E10,000,00000E00,00
1.0 BioUML9,09103E-10,000,00000E00,004,71367E-30,001,12800E30,002,99992E30,000,00000E00,00