Test: BIOMD0000000082.xml - Ok

test: BIOMD0000000082.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000082.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL1166069080.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: DRG_GTP  GDP  Recptor  G_GTP  DR  DRG_GDP  GTP  G_GDP  DRG  agonist 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner  jsim 
timesimulation DRG_GTP GDP Recptor G_GTP DR DRG_GDP GTP G_GDP DRG agonist
var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 ByoDyn0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 Jarnac0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 MathSBML0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 Oscill8 Core0,00000E00,00 - - - - - - 0,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,00 - -
0.0 SBToolbox20,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 VCell0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 copasi0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.0 jsim0,00000E00,000,00000E00,001,00000E-90,000,00000E00,000,00000E00,000,00000E00,001,00000E-50,001,00000E-90,000,00000E00,001,00000E-80,00
0.2 BioUML1,26569E-150,006,38937E-160,009,90532E-100,009,68432E-190,009,37300E-120,009,44918E-140,001,00000E-50,009,99905E-100,00-6,27725E-160,009,99053E-90,00
0.2 ByoDyn5,51400E-160,006,38937E-160,009,90532E-100,001,32557E-180,009,37300E-120,009,44918E-140,001,00000E-50,009,99905E-100,008,62069E-170,009,99053E-90,00
0.2 Jarnac5,51400E-160,006,38937E-160,009,90532E-100,001,32556E-180,009,37300E-120,009,44918E-140,001,00000E-50,009,99905E-100,008,62069E-170,009,99053E-90,00
0.2 MathSBML6,23845E-150,003,53154E-140,009,90706E-100,005,04763E-190,009,20594E-121,55,25328E-140,001,00000E-50,009,99912E-100,002,90764E-140,009,99071E-90,00
0.2 Oscill8 Core6,41060E-160,00 - - - - - - 9,34440E-120,009,86703E-140,001,00000E-50,009,99901E-100,009,05081E-170,00 - -
0.2 SBToolbox26,48988E-160,007,36738E-160,009,90529E-100,002,30945E-180,009,37738E-120,009,36362E-140,001,00000E-50,009,99910E-100,008,54199E-170,009,99051E-90,00
0.2 SBWOdeSolver5,51481E-160,006,39024E-160,009,90532E-100,001,32624E-180,009,37297E-120,009,44959E-140,001,00000E-50,009,99905E-100,008,62111E-170,009,99053E-90,00
0.2 VCell5,55884E-160,006,43657E-160,009,90533E-100,001,34755E-180,009,37153E-120,009,47067E-140,001,00000E-50,009,99905E-100,008,64264E-170,009,99053E-90,00
0.2 copasi4,91409E-140,007,08322E-160,009,90529E-100,00-2,21624E-170,009,37612E-120,009,38770E-140,001,00000E-50,009,99905E-100,00-4,84105E-140,009,99053E-90,00
0.2 edu.kgi.roadRunner5,51400E-160,006,38927E-160,009,90532E-100,001,32557E-180,009,37300E-120,009,44918E-140,001,00000E-50,009,99905E-100,008,62069E-170,009,99053E-90,00
0.2 jsim5,51400E-160,006,38937E-160,009,90532E-100,001,32557E-180,009,37300E-120,009,44918E-140,001,00000E-50,009,99905E-100,008,62069E-170,009,99053E-90,00
0.4 BioUML5,59127E-150,004,90149E-150,009,82041E-100,002,18280E-170,001,75969E-110,003,57394E-130,001,00000E-50,009,99638E-100,00-7,11786E-160,009,98204E-90,00
0.4 ByoDyn4,53387E-150,004,90149E-150,009,82041E-100,002,23567E-170,001,75969E-110,003,57394E-130,001,00000E-50,009,99638E-100,003,45084E-160,009,98204E-90,00
0.4 Jarnac4,53387E-150,004,90149E-150,009,82041E-100,002,23566E-170,001,75969E-110,003,57394E-130,001,00000E-50,009,99638E-100,003,45084E-160,009,98204E-90,00
0.4 MathSBML2,24149E-140,001,26889E-131009,82519E-100,001,81363E-180,001,71682E-112,11,85500E-1348,01,00000E-50,009,99688E-100,001,04472E-131009,98252E-90,00
0.4 Oscill8 Core4,86451E-150,00 - - - - - - 1,75468E-110,003,64373E-130,001,00000E-50,009,99630E-100,003,52451E-160,00 - -
0.4 SBToolbox23,64638E-150,003,94933E-150,009,82086E-100,00-4,72518E-170,001,75417E-110,003,67777E-130,931,00000E-50,009,99631E-100,003,54631E-160,009,98212E-90,00
0.4 SBWOdeSolver4,53419E-150,004,90182E-150,009,82041E-100,002,23594E-170,001,75969E-110,003,57401E-130,001,00000E-50,009,99638E-100,003,45091E-160,009,98204E-90,00
0.4 VCell4,54226E-150,004,91014E-150,009,82042E-100,002,24427E-170,001,75956E-110,003,57574E-130,001,00000E-50,009,99638E-100,003,45275E-160,009,98204E-90,00
0.4 copasi1,16327E-140,004,96167E-150,009,82038E-100,002,02771E-170,001,75998E-110,003,56840E-130,001,00000E-50,009,99638E-100,00-6,69155E-150,009,98204E-90,00
0.4 edu.kgi.roadRunner4,53387E-150,004,90148E-150,009,82041E-100,002,23567E-170,001,75969E-110,003,57394E-130,001,00000E-50,009,99638E-100,003,45084E-160,009,98204E-90,00
0.4 jsim4,53387E-150,004,90149E-150,009,82041E-100,002,23567E-170,001,75969E-110,003,57394E-130,001,00000E-50,009,99638E-100,003,45084E-160,009,98204E-90,00
0.6 BioUML1,58378E-140,001,58712E-140,009,74409E-100,001,11929E-160,002,48144E-110,007,60893E-130,001,00000E-50,009,99223E-100,00-7,98392E-170,009,97441E-90,00
0.6 ByoDyn1,50053E-140,001,58712E-140,009,74409E-100,001,12346E-160,002,48144E-110,007,60893E-130,001,00000E-50,009,99223E-100,007,52211E-160,009,97441E-90,00
0.6 Jarnac1,50053E-140,001,58712E-140,009,74409E-100,001,12346E-160,002,48144E-110,007,60893E-130,001,00000E-50,009,99223E-100,007,52211E-160,009,97441E-90,00
0.6 MathSBML4,42894E-140,002,50718E-131009,74967E-100,003,58353E-180,002,44175E-111,33,64581E-1352,01,00000E-50,009,99385E-100,002,06425E-131009,97497E-90,00
0.6 Oscill8 Core1,56874E-140,00 - - - - - - 2,47485E-110,007,69568E-130,301,00000E-50,009,99214E-100,007,61644E-160,00 - -
0.6 SBToolbox21,46021E-140,001,54060E-140,009,74432E-100,005,01302E-170,002,47813E-110,007,67231E-130,001,00000E-50,009,99221E-100,007,58161E-160,009,97442E-90,00
0.6 SBWOdeSolver1,50059E-140,001,58719E-140,009,74409E-100,001,12354E-160,002,48143E-110,007,60901E-130,001,00000E-50,009,99223E-100,007,52233E-160,009,97441E-90,00
0.6 VCell1,50169E-140,001,58831E-140,009,74410E-100,001,12529E-160,002,48132E-110,007,61042E-130,001,00000E-50,009,99223E-100,007,52373E-160,009,97441E-90,00
0.6 copasi1,55835E-140,001,60033E-140,009,74404E-100,001,17038E-160,002,48210E-110,007,59624E-130,001,00000E-50,009,99224E-100,003,01258E-160,009,97440E-90,00
0.6 edu.kgi.roadRunner1,50053E-140,001,58712E-140,009,74409E-100,001,12346E-160,002,48144E-110,007,60893E-130,001,00000E-50,009,99223E-100,007,52211E-160,009,97441E-90,00
0.6 jsim1,50053E-140,001,58712E-140,009,74409E-100,001,12346E-160,002,48144E-110,007,60893E-130,001,00000E-50,009,99223E-100,007,52211E-160,009,97441E-90,00
0.8 BioUML3,55718E-140,003,61128E-140,009,67533E-100,003,46505E-160,003,11502E-110,001,28084E-120,001,00000E-50,009,98683E-100,001,88899E-160,009,96753E-90,00
0.8 ByoDyn3,44743E-140,003,61128E-140,009,67533E-100,003,47053E-160,003,11502E-110,001,28084E-120,001,00000E-50,009,98683E-100,001,28580E-150,009,96753E-90,00
0.8 Jarnac3,44743E-140,003,61128E-140,009,67533E-100,003,47053E-160,003,11502E-110,001,28084E-120,001,00000E-50,009,98683E-100,001,28580E-150,009,96753E-90,00
0.8 MathSBML6,76209E-140,003,82796E-131009,67577E-100,005,47134E-180,003,14844E-110,685,55454E-1355,81,00000E-50,009,99062E-100,003,15170E-131009,96758E-90,00
0.8 Oscill8 Core3,55851E-140,00 - - - - - - 3,10733E-110,241,29034E-120,731,00000E-50,009,98672E-100,001,29650E-150,00 - -
0.8 SBToolbox23,67311E-140,003,84715E-140,009,67436E-100,004,63869E-160,003,12725E-110,001,25806E-120,001,00000E-50,009,98702E-100,001,26508E-150,009,96742E-90,00
0.8 SBWOdeSolver3,44754E-140,003,61139E-140,009,67533E-100,003,47074E-160,003,11501E-110,001,28085E-120,001,00000E-50,009,98683E-100,001,28584E-150,009,96753E-90,00
0.8 VCell3,44885E-140,003,61275E-140,009,67534E-100,003,47362E-160,003,11492E-110,001,28096E-120,001,00000E-50,009,98683E-100,001,28594E-150,009,96753E-90,00
0.8 copasi3,60585E-140,003,62842E-140,009,67526E-100,003,56438E-160,003,11595E-110,001,27908E-120,001,00000E-50,009,98685E-100,00-1,36893E-160,009,96753E-90,00
0.8 edu.kgi.roadRunner3,44743E-140,003,61128E-140,009,67533E-100,003,47053E-160,003,11502E-110,001,28084E-120,001,00000E-50,009,98683E-100,001,28580E-150,009,96753E-90,00
0.8 jsim3,44743E-140,003,61128E-140,009,67533E-100,003,47053E-160,003,11502E-110,001,28084E-120,001,00000E-50,009,98683E-100,001,28580E-150,009,96753E-90,00
1.0 BioUML6,55405E-140,006,77411E-140,009,61323E-100,008,22876E-160,003,67138E-110,001,89631E-120,001,00000E-50,009,98036E-100,001,36088E-150,009,96132E-90,00
1.0 ByoDyn6,49742E-140,006,77411E-140,009,61323E-100,008,23159E-160,003,67138E-110,001,89631E-120,001,00000E-50,009,98036E-100,001,92683E-150,009,96132E-90,00
1.0 Jarnac6,49742E-140,006,77411E-140,009,61323E-100,008,23159E-160,003,67138E-110,001,89631E-120,001,00000E-50,009,98036E-100,001,92683E-150,009,96132E-90,00
1.0 MathSBML8,81688E-140,004,99116E-131009,59877E-100,127,13391E-180,003,88997E-115,17,23799E-1360,71,00000E-50,009,98777E-100,004,10940E-131009,95988E-90,00
1.0 Oscill8 Core6,65635E-140,00 - - - - - - 3,66295E-110,231,90594E-120,501,00000E-50,009,98025E-100,001,93815E-150,00 - -
1.0 SBToolbox27,00337E-140,007,31428E-140,009,61071E-100,001,19398E-150,003,70150E-110,001,84017E-120,001,00000E-50,009,98084E-100,001,87540E-150,009,96103E-90,00
1.0 SBWOdeSolver6,49756E-140,006,77425E-140,009,61323E-100,008,23199E-160,003,67137E-110,001,89632E-120,001,00000E-50,009,98036E-100,001,92684E-150,009,96132E-90,00
1.0 VCell6,49905E-140,006,77579E-140,009,61324E-100,008,23613E-160,003,67129E-110,001,89641E-120,001,00000E-50,009,98036E-100,001,92695E-150,009,96132E-90,00
1.0 copasi6,52008E-140,006,78148E-140,009,61319E-100,008,34259E-160,003,67191E-110,001,89535E-120,001,00000E-50,009,98037E-100,001,76200E-150,009,96132E-90,00
1.0 edu.kgi.roadRunner6,49742E-140,006,77411E-140,009,61323E-100,008,23159E-160,003,67138E-110,001,89631E-120,001,00000E-50,009,98036E-100,001,92683E-150,009,96132E-90,00
1.0 jsim6,49742E-140,006,77411E-140,009,61323E-100,008,23159E-160,003,67138E-110,001,89631E-120,001,00000E-50,009,98036E-100,001,92683E-150,009,96132E-90,00
1.2 BioUML1,08883E-130,001,12481E-130,009,55699E-100,001,65309E-150,004,16008E-110,002,58920E-120,001,00000E-50,009,97298E-100,001,90403E-150,009,95570E-90,00
1.2 ByoDyn1,08128E-130,001,12481E-130,009,55699E-100,001,65347E-150,004,16008E-110,002,58920E-120,001,00000E-50,009,97298E-100,002,65871E-150,009,95570E-90,00
1.2 Jarnac1,08128E-130,001,12481E-130,009,55699E-100,001,65347E-150,004,16008E-110,002,58920E-120,001,00000E-50,009,97298E-100,002,65871E-150,009,95570E-90,00
1.2 MathSBML-2,35681E-102,06E55,40332E-133529,54579E-100,001,22619E-131004,35216E-113,61,48172E-1241,11,00002E-50,009,97978E-100,002,36099E-101009,95458E-90,00
1.2 Oscill8 Core1,10224E-130,00 - - - - - - 4,15122E-110,212,59844E-120,351,00000E-50,009,97287E-100,002,67015E-150,00 - -
1.2 SBToolbox21,14510E-133,91,19419E-130,009,55362E-100,002,24040E-150,004,20102E-110,002,51369E-120,001,00000E-50,009,97365E-100,002,58912E-150,009,95534E-90,00
1.2 SBWOdeSolver1,08130E-130,001,12483E-130,009,55699E-100,001,65354E-150,004,16008E-110,002,58921E-120,001,00000E-50,009,97298E-100,002,65872E-150,009,95570E-90,00
1.2 VCell1,08146E-130,001,12500E-130,009,55700E-100,001,65409E-150,004,16001E-110,002,58928E-120,001,00000E-50,009,97298E-100,002,65881E-150,009,95570E-90,00
1.2 copasi1,08059E-130,001,12490E-130,009,55697E-100,001,66532E-150,004,16036E-110,002,58876E-120,001,00000E-50,009,97299E-100,002,72294E-150,009,95570E-90,00
1.2 edu.kgi.roadRunner1,08128E-130,001,12481E-130,009,55699E-100,001,65347E-150,004,16008E-110,002,58920E-120,001,00000E-50,009,97298E-100,002,65871E-150,009,95570E-90,00
1.2 jsim1,08128E-130,001,12481E-130,009,55699E-100,001,65347E-150,004,16008E-110,002,58920E-120,001,00000E-50,009,97298E-100,002,65871E-150,009,95570E-90,00
1.4 BioUML1,65229E-130,001,71721E-130,009,50592E-100,002,96282E-150,004,58952E-110,003,34388E-120,001,00000E-50,009,96484E-100,003,44246E-150,009,95059E-90,00
1.4 ByoDyn1,65205E-130,001,71721E-130,009,50592E-100,002,96283E-150,004,58952E-110,003,34388E-120,001,00000E-50,009,96484E-100,003,46698E-150,009,95059E-90,00
1.4 Jarnac1,65205E-130,001,71721E-130,009,50592E-100,002,96283E-150,004,58952E-110,003,34388E-120,001,00000E-50,009,96484E-100,003,46698E-150,009,95059E-90,00
1.4 MathSBML6,43087E-132785,77469E-132269,49754E-100,009,94305E-150,004,73461E-112,42,33312E-1228,91,00000E-50,009,97090E-100,00-7,58697E-140,009,94975E-90,00
1.4 Oscill8 Core1,67817E-130,00 - - - - - - 4,58046E-110,203,35233E-120,251,00000E-50,009,96473E-100,003,47815E-150,00 - -
1.4 SBToolbox21,70342E-130,001,77406E-130,009,50304E-100,003,53050E-150,004,62454E-110,003,28011E-120,001,00000E-50,009,96546E-100,003,40789E-150,009,95033E-90,00
1.4 SBWOdeSolver1,65207E-130,001,71723E-130,009,50592E-100,002,96292E-150,004,58951E-110,003,34389E-120,001,00000E-50,009,96484E-100,003,46699E-150,009,95059E-90,00
1.4 VCell1,65226E-130,001,71743E-130,009,50593E-100,002,96371E-150,004,58945E-110,003,34395E-120,001,00000E-50,009,96484E-100,003,46707E-150,009,95059E-90,00
1.4 copasi1,65010E-130,121,71685E-130,009,50591E-100,002,97529E-150,004,58963E-110,003,34378E-120,001,00000E-50,009,96485E-100,003,61214E-150,009,95059E-90,00
1.4 edu.kgi.roadRunner1,65205E-130,001,71721E-130,009,50592E-100,002,96283E-150,004,58952E-110,003,34388E-120,001,00000E-50,009,96484E-100,003,46698E-150,009,95059E-90,00
1.4 jsim1,65205E-130,001,71721E-130,009,50592E-100,002,96283E-150,004,58952E-110,003,34388E-120,001,00000E-50,009,96484E-100,003,46698E-150,009,95059E-90,00
1.6 BioUML2,37228E-130,002,46558E-130,009,45941E-100,004,88460E-150,004,96703E-110,004,14689E-120,001,00000E-50,009,95607E-100,004,28155E-150,009,94594E-90,00
1.6 ByoDyn2,37171E-130,002,46558E-130,009,45941E-100,004,88463E-150,004,96703E-110,004,14689E-120,001,00000E-50,009,95607E-100,004,33905E-150,009,94594E-90,00
1.6 Jarnac2,37171E-130,002,46558E-130,009,45941E-100,004,88463E-150,004,96703E-110,004,14689E-120,001,00000E-50,009,95607E-100,004,33905E-150,009,94594E-90,00
1.6 MathSBML6,11336E-131546,36763E-131549,45302E-100,001,58174E-140,005,08732E-111,83,20409E-1221,71,00000E-50,009,96160E-100,009,00703E-150,009,94530E-90,00
1.6 Oscill8 Core2,40297E-130,00 - - - - - - 4,95795E-110,184,15426E-120,171,00000E-50,009,95596E-100,004,34964E-150,00 - -
1.6 SBToolbox22,41131E-130,002,51152E-130,009,45677E-100,005,50581E-150,004,99845E-110,004,09101E-120,001,00000E-50,009,95658E-100,004,28672E-150,009,94565E-90,00
1.6 SBWOdeSolver2,37173E-130,002,46561E-130,009,45941E-100,004,88476E-150,004,96702E-110,004,14690E-120,001,00000E-50,009,95607E-100,004,33907E-150,009,94594E-90,00
1.6 VCell2,37194E-130,002,46583E-130,009,45942E-100,004,88575E-150,004,96696E-110,004,14695E-120,001,00000E-50,009,95607E-100,004,33913E-150,009,94594E-90,00
1.6 copasi2,37202E-130,002,46482E-130,009,45942E-100,004,89723E-150,004,96698E-110,004,14710E-120,001,00000E-50,009,95607E-100,004,21686E-150,009,94594E-90,00
1.6 edu.kgi.roadRunner2,37171E-130,002,46558E-130,009,45941E-100,004,88463E-150,004,96703E-110,004,14689E-120,001,00000E-50,009,95607E-100,004,33905E-150,009,94594E-90,00
1.6 jsim2,37171E-130,002,46558E-130,009,45941E-100,004,88463E-150,004,96703E-110,004,14689E-120,001,00000E-50,009,95607E-100,004,33905E-150,009,94594E-90,00
1.8 BioUML3,25459E-130,003,37841E-130,009,41693E-100,007,55750E-150,005,29903E-110,004,98665E-120,001,00000E-50,009,94676E-100,004,53794E-150,009,94169E-90,00
1.8 ByoDyn3,24732E-130,003,37841E-130,009,41693E-100,007,55786E-150,005,29903E-110,004,98665E-120,001,00000E-50,009,94676E-100,005,26398E-150,009,94169E-90,00
1.8 Jarnac3,24732E-130,003,37841E-130,009,41693E-100,007,55786E-150,005,29903E-110,004,98665E-120,001,00000E-50,009,94676E-100,005,26398E-150,009,94169E-90,00
1.8 MathSBML7,05560E-131157,42455E-131179,41633E-100,002,36935E-140,005,35344E-110,364,11491E-1216,51,00000E-50,009,95144E-100,001,19040E-140,009,94163E-90,00
1.8 Oscill8 Core3,28357E-130,00 - - - - - - 5,29007E-110,17