Test: BIOMD0000000083.xml - Ok

test: BIOMD0000000083.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000083.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL4710748444.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: parameter_0000097  species_10  species_11  species_14  species_15  species_12  species_13  species_9  species_18  species_16  species_7  species_8  species_17  species_5  species_6  species_3  parameter_0000096  species_4  species_2  species_1  species_0 
Simulators: BioUML  ByoDyn  MathSBML  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation parameter_0000097 species_10 species_11 species_14 species_15 species_12 species_13 species_9 species_18 species_16 species_7 species_8 species_17 species_5 species_6 species_3 parameter_0000096 species_4 species_2 species_1 species_0
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML3,00000E025,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,001,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn2,40000E020,00,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E01000,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 MathSBML - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 VCell - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 copasi - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.0 edu.kgi.roadRunner - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,00 - - 0,00000E00,000,00000E00,000,00000E00,000,00000E00,00
0.2 BioUML3,00000E025,03,18173E-200,008,42775E-220,007,38483E-240,001,23177E-270,002,94770E-220,002,03676E-50,001,93248E-100,001,50379E-110,002,50109E-80,004,33363E-80,001,16217E-90,008,27623E-100,003,35676E-80,006,91228E-110,004,50626E-40,001,00000E05,22E112,80560E-90,005,00822E-40,008,60154E-30,002,91484E-10,00
0.2 ByoDyn2,40000E020,02,67007E-206,97,07268E-226,96,19734E-246,91,03370E-276,92,47375E-226,92,03676E-50,001,62172E-106,91,50379E-110,002,50109E-80,003,61476E-87,09,75036E-106,98,27623E-100,003,35676E-80,006,91228E-110,004,50626E-40,00-1,91695E-101002,80560E-90,005,00822E-40,008,60154E-30,002,91484E-10,00
0.2 MathSBML - - 3,19698E-200,008,55342E-220,007,41385E-240,001,24882E-270,002,99032E-220,002,03676E-50,001,93249E-100,001,50382E-110,002,50108E-80,004,33362E-80,001,16216E-90,008,27618E-100,003,35675E-80,006,91250E-110,004,50626E-40,00 - - 2,80560E-90,005,00822E-40,008,60154E-30,002,91484E-10,00
0.2 SBWOdeSolver - - 3,20430E-200,238,50111E-220,007,47039E-240,001,24794E-270,002,97372E-220,002,03714E-50,001,93535E-100,001,50615E-110,002,50333E-80,004,33740E-80,001,16354E-90,008,28580E-100,003,35974E-80,006,92362E-110,004,50676E-40,00 - - 2,80912E-90,005,00854E-40,008,60178E-30,002,91482E-10,00
0.2 VCell - - 2,86827E-200,007,59638E-220,006,65495E-240,001,11015E-270,002,65690E-220,002,03677E-50,001,74159E-100,001,50382E-110,002,50110E-80,003,88588E-80,001,04721E-90,008,27632E-100,003,35678E-80,006,91244E-110,004,50627E-40,00 - - 2,80563E-90,005,00822E-40,008,60155E-30,002,91484E-10,00
0.2 copasi - - 3,19041E-200,008,50501E-220,007,40783E-240,001,24236E-270,002,97398E-220,002,03676E-50,001,93249E-100,001,50381E-110,002,50109E-80,004,33362E-80,001,16217E-90,008,27621E-100,003,35675E-80,006,91244E-110,004,50626E-40,00 - - 2,80560E-90,005,00822E-40,008,60154E-30,002,91484E-10,00
0.2 edu.kgi.roadRunner - - 3,18173E-200,008,42775E-220,007,38483E-240,001,23177E-270,002,94770E-220,002,03676E-50,001,93248E-100,001,50379E-110,002,50109E-80,004,33363E-80,001,16217E-90,008,27623E-100,003,35676E-80,006,91228E-110,004,50626E-40,00 - - 2,80560E-90,005,00822E-40,008,60154E-30,002,91484E-10,00
0.4 BioUML3,00000E025,01,21631E-150,006,34011E-170,001,14199E-180,001,21132E-210,002,31620E-170,001,82201E-40,003,92089E-80,003,58908E-90,001,85023E-60,002,99280E-60,001,45945E-70,009,86202E-80,002,42916E-60,001,90329E-80,002,80804E-30,001,00000E02,61E114,18555E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.4 ByoDyn2,40000E020,01,01949E-156,95,31433E-177,09,57315E-197,01,01542E-217,01,94148E-177,01,82201E-40,003,28645E-86,93,58908E-90,001,85023E-60,002,50287E-66,81,22345E-76,99,86202E-80,002,42916E-60,001,90329E-80,002,80804E-30,00-3,83333E-101004,18555E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.4 MathSBML - - 1,21683E-150,006,35045E-170,001,14409E-180,001,21509E-210,002,32002E-170,001,82201E-40,003,92088E-80,003,58907E-90,001,85023E-60,002,99280E-60,001,45945E-70,009,86201E-80,002,42916E-60,001,90329E-80,002,80804E-30,00 - - 4,18554E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.4 SBWOdeSolver - - 1,21950E-150,166,35924E-170,001,14597E-180,001,21711E-210,002,32328E-170,001,82213E-40,003,92304E-80,003,59125E-90,001,85088E-60,002,99381E-60,001,46011E-70,009,86635E-80,002,43001E-60,001,90454E-80,002,80816E-30,00 - - 4,18768E-70,002,23255E-30,002,76958E-20,005,19337E-10,00
0.4 VCell - - 1,09548E-150,005,71223E-170,001,02924E-180,001,09180E-210,002,08688E-170,001,82202E-40,003,53087E-80,003,58925E-90,001,85025E-60,002,68639E-60,001,31368E-70,009,86226E-80,002,42919E-60,001,90340E-80,002,80804E-30,00 - - 4,18569E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.4 copasi - - 1,21757E-150,006,35971E-170,001,14559E-180,001,21775E-210,002,32338E-170,001,82201E-40,003,92089E-80,003,58909E-90,001,85022E-60,002,99280E-60,001,45945E-70,009,86200E-80,002,42916E-60,001,90331E-80,002,80804E-30,00 - - 4,18556E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.4 edu.kgi.roadRunner - - 1,21631E-150,006,34011E-170,001,14199E-180,001,21132E-210,002,31620E-170,001,82201E-40,003,92089E-80,003,58908E-90,001,85023E-60,002,99280E-60,001,45945E-70,009,86202E-80,002,42916E-60,001,90329E-80,002,80804E-30,00 - - 4,18555E-70,002,23252E-30,002,76955E-20,005,19338E-10,00
0.6 BioUML3,00000E025,03,94802E-130,003,01488E-140,008,31997E-160,002,44027E-180,001,15092E-140,005,70696E-40,006,64179E-70,006,94095E-80,001,93351E-50,002,94855E-50,001,98144E-60,001,28451E-60,002,48917E-50,004,14739E-70,007,61765E-30,001,00000E01,74E116,59016E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.6 ByoDyn2,40000E020,03,31344E-136,72,52959E-146,86,97865E-166,82,04690E-186,89,65625E-156,85,70696E-40,005,57430E-76,76,94095E-80,001,93351E-50,002,47120E-56,71,66339E-66,71,28451E-60,002,48917E-50,004,14739E-70,007,61765E-30,00-5,74957E-101006,59017E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.6 MathSBML - - 3,94725E-130,003,01549E-140,008,32245E-160,002,44106E-180,001,15116E-140,005,70696E-40,006,64174E-70,006,94087E-80,001,93350E-50,002,94855E-50,001,98143E-60,001,28450E-60,002,48916E-50,004,14732E-70,007,61766E-30,00 - - 6,59011E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.6 SBWOdeSolver - - 3,95372E-130,143,01989E-140,008,33603E-160,152,44669E-180,201,15287E-140,005,70713E-40,006,64370E-70,006,94322E-80,001,93389E-50,002,94909E-50,001,98193E-60,001,28481E-60,002,48964E-50,004,14890E-70,007,61782E-30,00 - - 6,59205E-60,004,70668E-30,005,20837E-20,007,19048E-10,00
0.6 VCell - - 3,55309E-130,002,71350E-140,007,48940E-160,002,19671E-180,001,03589E-140,005,70696E-40,005,97686E-70,006,94117E-80,001,93352E-50,002,64984E-50,001,78298E-60,001,28452E-60,002,48918E-50,004,14756E-70,007,61766E-30,00 - - 6,59032E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.6 copasi - - 3,94825E-130,003,01554E-140,008,32329E-160,002,44176E-180,001,15119E-140,005,70696E-40,006,64179E-70,006,94095E-80,001,93351E-50,002,94855E-50,001,98144E-60,001,28451E-60,002,48917E-50,004,14739E-70,007,61765E-30,00 - - 6,59016E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.6 edu.kgi.roadRunner - - 3,94802E-130,003,01488E-140,008,31997E-160,002,44027E-180,001,15092E-140,005,70696E-40,006,64179E-70,006,94095E-80,001,93351E-50,002,94855E-50,001,98144E-60,001,28451E-60,002,48917E-50,004,14739E-70,007,61765E-30,00 - - 6,59016E-60,004,70665E-30,005,20835E-20,007,19049E-10,00
0.8 BioUML3,00000E025,01,88733E-110,001,86815E-120,006,99056E-140,004,06288E-160,007,45051E-130,001,19525E-30,004,21585E-60,004,92140E-70,009,21765E-50,001,33696E-40,001,10728E-50,006,95462E-60,001,16630E-40,003,25648E-60,001,48263E-20,001,00000E01,30E114,19882E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
0.8 ByoDyn2,40000E020,01,58426E-116,71,56821E-126,75,86821E-146,73,41059E-166,76,25431E-136,71,19525E-30,003,53885E-66,74,92140E-70,009,21765E-50,001,12034E-46,79,29428E-66,76,95462E-60,001,16630E-40,003,25648E-60,001,48263E-20,00-7,66553E-101004,19882E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
0.8 MathSBML - - 1,88685E-110,001,86813E-120,006,99041E-140,004,06216E-160,007,45042E-130,001,19525E-30,004,21584E-60,004,92136E-70,009,21764E-50,001,33696E-40,001,10728E-50,006,95461E-60,001,16630E-40,003,25643E-60,001,48263E-20,00 - - 4,19879E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
0.8 SBWOdeSolver - - 1,88906E-110,001,87012E-120,006,99923E-140,104,06974E-160,137,45862E-130,001,19527E-30,004,21659E-60,004,92240E-70,009,21878E-50,001,33711E-40,001,10744E-50,006,95562E-60,001,16644E-40,003,25723E-60,001,48265E-20,00 - - 4,19959E-50,007,53731E-30,007,93453E-20,009,01804E-10,00
0.8 VCell - - 1,69867E-110,001,68144E-120,006,29221E-140,003,65709E-160,006,70595E-130,001,19525E-30,003,79428E-60,004,92147E-70,009,21768E-50,001,20059E-40,009,96527E-60,006,95466E-60,001,16630E-40,003,25654E-60,001,48263E-20,00 - - 4,19887E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
0.8 copasi - - 1,88743E-110,001,86840E-120,006,99204E-140,004,06426E-160,007,45162E-130,001,19525E-30,004,21585E-60,004,92140E-70,009,21765E-50,001,33696E-40,001,10728E-50,006,95462E-60,001,16630E-40,003,25648E-60,001,48263E-20,00 - - 4,19882E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
0.8 edu.kgi.roadRunner - - 1,88733E-110,001,86815E-120,006,99056E-140,004,06288E-160,007,45051E-130,001,19525E-30,004,21585E-60,004,92140E-70,009,21765E-50,001,33696E-40,001,10728E-50,006,95462E-60,001,16630E-40,003,25648E-60,001,48263E-20,00 - - 4,19882E-50,007,53729E-30,007,93452E-20,009,01805E-10,00
1.0 BioUML3,00000E025,03,22558E-100,003,86714E-110,001,83291E-120,001,76609E-140,001,61009E-110,002,03204E-30,001,59292E-50,002,04233E-60,002,88605E-40,004,01235E-40,003,85489E-50,002,36403E-50,003,59682E-40,001,47718E-50,002,41720E-20,001,00000E01,04E111,64449E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 ByoDyn2,40000E020,02,70717E-106,63,24572E-116,61,53844E-126,71,48236E-146,71,35137E-116,62,03204E-30,001,33688E-56,52,04233E-60,002,88605E-40,003,36243E-46,43,23521E-56,52,36403E-50,003,59682E-40,001,47718E-50,002,41720E-20,00-9,58149E-101001,64449E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 MathSBML - - 3,22514E-100,003,86678E-110,001,83290E-120,001,76631E-140,001,60997E-110,002,03204E-30,001,59291E-50,002,04233E-60,002,88605E-40,004,01235E-40,003,85489E-50,002,36402E-50,003,59682E-40,001,47717E-50,002,41720E-20,00 - - 1,64449E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 SBWOdeSolver - - 3,22763E-100,003,86996E-110,001,83449E-120,001,76816E-140,001,61131E-110,002,03206E-30,001,59310E-50,002,04261E-60,002,88629E-40,004,01265E-40,003,85528E-50,002,36425E-50,003,59710E-40,001,47742E-50,002,41722E-20,00 - - 1,64470E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 VCell - - 2,89708E-100,003,47599E-110,001,64887E-120,001,58882E-140,001,44747E-110,002,03205E-30,001,43003E-50,002,04251E-60,002,88616E-40,003,59280E-40,003,45909E-50,002,36415E-50,003,59694E-40,001,47734E-50,002,41721E-20,00 - - 1,64462E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 copasi - - 3,22568E-100,003,86750E-110,001,83325E-120,001,76659E-140,001,61027E-110,002,03204E-30,001,59292E-50,002,04233E-60,002,88605E-40,004,01235E-40,003,85489E-50,002,36403E-50,003,59682E-40,001,47718E-50,002,41720E-20,00 - - 1,64449E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.0 edu.kgi.roadRunner - - 3,22558E-100,003,86714E-110,001,83291E-120,001,76609E-140,001,61009E-110,002,03204E-30,001,59292E-50,002,04233E-60,002,88605E-40,004,01235E-40,003,85489E-50,002,36403E-50,003,59682E-40,001,47718E-50,002,41720E-20,00 - - 1,64449E-40,001,05211E-20,001,08237E-10,001,07287E00,00
1.2 BioUML3,00000E025,02,91736E-90,004,05688E-100,002,33041E-110,003,33484E-130,001,76130E-100,003,04721E-30,004,38845E-50,006,09552E-60,006,97252E-40,009,35454E-40,001,00387E-40,006,04571E-50,008,57635E-40,004,77069E-50,003,53458E-20,001,00000E08,70E104,76390E-40,001,35529E-20,001,38098E-10,001,23520E00,00
1.2 ByoDyn2,40000E020,02,44819E-96,73,40458E-106,81,95578E-117,02,79874E-137,11,47812E-106,93,04721E-30,003,68259E-56,56,09552E-60,006,97252E-40,007,83881E-46,78,42385E-56,66,04571E-50,008,57635E-40,004,77069E-50,003,53458E-20,00-1,14980E-91004,76390E-40,001,35529E-20,001,38098E-10,001,23520E00,00
1.2 MathSBML - - 2,91741E-90,004,05724E-100,002,33089E-110,003,33581E-130,001,76150E-100,003,04721E-30,004,38846E-50,006,09553E-60,006,97252E-40,009,35454E-40,001,00387E-40,006,04571E-50,008,57635E-40,004,77069E-50,003,53458E-20,00 - - 4,76390E-40,001,35529E-20,001,38098E-10,001,23520E00,00
1.2 SBWOdeSolver - - 2,91870E-90,004,05903E-100,002,33187E-110,003,33770E-130,001,76227E-100,003,04723E-30,004,38879E-50,006,09611E-60,006,97293E-40,009,35504E-40,001,00394E-40,006,04611E-50,008,57684E-40,004,77124E-50,003,53460E-20,00 - - 4,76434E-40,001,35529E-20,001,38098E-10,001,23520E00,00
1.2 VCell - - 2,62514E-90,003,65465E-100,002,10287E-110,003,01122E-130,001,58730E-10