Test: BIOMD0000000085.xml - Ok


test: BIOMD0000000085.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000085.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL5317679037.png


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: species_10  species_11  species_14  species_15  species_12  species_13  species_9  species_16  species_7  species_8  species_5  species_6  species_3  species_4  species_2  species_1  species_0  parameter_0  parameter_1 
Simulators: BioUML  ByoDyn  Jarnac  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  VCell  copasi  edu.kgi.roadRunner 
timesimulation species_10 species_11 species_14 species_15 species_12 species_13 species_9 species_16 species_7 species_8 species_5 species_6 species_3 species_4 species_2 species_1 species_0 parameter_0 parameter_1
var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error var error
0.0 BioUML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 ByoDyn0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 Jarnac0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 MathSBML0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 Oscill8 Core0,00000E00,00 - - 0,00000E00,000,00000E00,00 - - 0,00000E00,00 - - - - 4,40000E-30,001,49000E-40,000,00000E00,000,00000E00,00 - - 1,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 SBToolbox20,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,000,00000E00,000,00000E00,00
0.0 SBWOdeSolver0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 VCell0,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 copasi0,00000E00,000,00000E00,000,00000E00,000,00000E00,001,56478E-180,000,00000E00,000,00000E00,00-4,23437E-220,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.0 edu.kgi.roadRunner0,00000E00,000,00000E00,000,00000E00,000,00000E00,003,48882E-190,000,00000E00,000,00000E00,009,59530E-230,004,40000E-30,001,49000E-40,000,00000E00,000,00000E00,004,68000E-40,001,00000E-50,000,00000E00,001,00000E-80,000,00000E00,00 - - - -
0.2 BioUML9,96460E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,55731E-110,001,57572E-130,000,00000E00,004,40000E-30,001,49000E-40,009,67080E-120,001,94037E-160,004,67990E-40,009,99001E-60,000,00000E00,003,27494E-190,000,00000E00,009,97427E-10,001,29665E-20,00
0.2 ByoDyn9,96460E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,55731E-110,001,57572E-130,000,00000E00,004,40000E-30,001,49000E-40,009,67229E-120,001,93985E-160,004,67990E-40,009,99001E-60,000,00000E00,003,27483E-190,000,00000E00,009,97427E-10,001,29665E-20,00
0.2 Jarnac9,96460E-90,00-3,48596E-240,00-2,16840E-190,003,12250E-170,00-8,97855E-200,002,55731E-110,001,57572E-130,00-3,38271E-170,004,40000E-30,001,49000E-40,009,67229E-120,001,93985E-160,004,67990E-40,009,99001E-60,00-4,22068E-280,003,27483E-190,002,12323E-180,00 - - - -
0.2 MathSBML9,96849E-90,00-2,80608E-370,00-6,61228E-310,00-1,71331E-290,00-2,46866E-360,002,37428E-110,001,51694E-132,8-6,56318E-290,004,40000E-30,001,49000E-40,009,72436E-120,001,39590E-160,004,67990E-40,009,99001E-60,00-8,17631E-330,00-2,11140E-120,00-2,13084E-300,00 - - - -
0.2 Oscill8 Core1,00026E-80,34 - - 2,37687E-131006,99110E-12100 - - -1,92715E-11175 - - - - 4,40000E-30,001,49000E-40,009,70972E-120,00-6,52359E-14100 - - 9,98994E-60,00-1,63893E-190,006,47028E-180,00-7,55770E-12100 - - - -
0.2 SBToolbox29,95612E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,56151E-110,161,56017E-130,000,00000E00,004,40000E-30,001,49000E-40,003,33617E-112433,27892E-150,004,67990E-40,009,99000E-60,000,00000E00,00-1,52471E-116220,00000E00,009,98951E-10,001,29860E-20,00
0.2 SBWOdeSolver9,96459E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,55730E-110,001,57571E-130,000,00000E00,004,40000E-30,001,49000E-40,009,67228E-120,001,93985E-160,004,67990E-40,009,99001E-60,000,00000E00,003,27482E-190,000,00000E00,00 - - - -
0.2 VCell9,96460E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,002,55693E-110,001,57559E-130,000,00000E00,004,40000E-30,001,49000E-40,009,67229E-120,001,94632E-160,004,67990E-40,009,99001E-60,000,00000E00,009,38412E-190,000,00000E00,00 - - - -
0.2 copasi9,96495E-90,001,80191E-200,001,86000E-190,00-4,55068E-170,00-2,45557E-170,002,52253E-110,001,56447E-130,003,78936E-170,004,40000E-30,001,49000E-40,009,67263E-120,001,93114E-160,004,67990E-40,009,99001E-60,00-7,90978E-190,003,27490E-190,003,39847E-170,00 - - - -
0.2 edu.kgi.roadRunner9,96460E-90,002,17050E-170,00-1,06520E-210,00-2,79641E-200,00-2,46911E-170,002,55731E-110,001,57572E-130,00-2,87884E-190,004,40000E-30,001,49000E-40,009,67229E-120,001,93962E-160,004,67990E-40,009,99001E-60,00-6,46948E-260,003,27483E-190,003,33434E-180,00 - - - -
0.4 BioUML9,94465E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,54708E-110,002,21927E-130,000,00000E00,004,40000E-30,001,49000E-40,009,65250E-120,002,41542E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26846E-190,000,00000E00,009,95431E-10,001,29406E-20,00
0.4 ByoDyn9,94465E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,54708E-110,002,21927E-130,000,00000E00,004,40000E-30,001,49000E-40,009,65291E-120,002,41528E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26843E-190,000,00000E00,009,95431E-10,001,29406E-20,00
0.4 Jarnac9,94465E-90,00-3,20161E-240,00-1,08420E-190,007,80626E-180,00-7,79270E-200,004,54708E-110,002,21927E-130,00-1,12757E-170,004,40000E-30,001,49000E-40,009,65291E-120,002,41528E-160,004,67990E-40,009,99001E-60,00-1,76986E-280,003,26843E-190,003,58440E-180,00 - - - -
0.4 MathSBML9,94846E-90,00-7,22586E-370,00-1,49862E-300,00-3,94035E-290,00-6,45923E-360,004,17051E-110,002,09748E-134,9-1,60750E-280,004,40000E-30,001,49000E-40,009,65096E-120,002,31964E-160,004,67990E-40,009,99001E-60,00-1,76803E-320,00-3,07093E-140,00-5,44179E-300,00 - - - -
0.4 Oscill8 Core9,97156E-90,23 - - 2,34758E-131006,95937E-12100 - - 7,90795E-1398,1 - - - - 4,40000E-30,001,49000E-40,009,67911E-120,00-5,41164E-14100 - - 9,98996E-60,00-1,36109E-190,005,43203E-190,00-1,79427E-11100 - - - -
0.4 SBToolbox29,94544E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,51242E-110,002,20790E-130,000,00000E00,004,40000E-30,001,49000E-40,009,70805E-120,302,63793E-160,004,67990E-40,009,99000E-60,000,00000E00,00-5,15258E-131,58E30,00000E00,009,95514E-10,001,29420E-20,00
0.4 SBWOdeSolver9,94465E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,54706E-110,002,21926E-130,000,00000E00,004,40000E-30,001,49000E-40,009,65291E-120,002,41527E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26842E-190,000,00000E00,00 - - - -
0.4 VCell9,94466E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,004,54679E-110,002,21918E-130,000,00000E00,004,40000E-30,001,49000E-40,009,65292E-120,002,41016E-160,004,67990E-40,009,99001E-60,000,00000E00,008,97411E-190,000,00000E00,00 - - - -
0.4 copasi9,94506E-90,007,82907E-210,002,65593E-190,003,90652E-170,00-1,12028E-160,004,50628E-110,002,20607E-130,00-4,55252E-170,004,40000E-30,001,49000E-40,009,65331E-120,002,41067E-160,004,67990E-40,009,99001E-60,00-5,05254E-190,003,26867E-190,001,20610E-160,00 - - - -
0.4 edu.kgi.roadRunner9,94465E-90,00-2,76630E-170,00-8,54377E-220,00-2,85609E-200,002,83852E-170,004,54708E-110,002,21927E-130,00-2,56920E-190,004,40000E-30,001,49000E-40,009,65291E-120,002,41573E-160,004,67990E-40,009,99001E-60,007,68039E-260,003,26843E-190,00-2,68353E-190,00 - - - -
0.6 BioUML9,92929E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,07988E-110,002,71502E-130,000,00000E00,004,40000E-30,001,49000E-40,009,63841E-120,002,78137E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26346E-190,000,00000E00,009,93893E-10,001,29206E-20,00
0.6 ByoDyn9,92929E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,07988E-110,002,71502E-130,000,00000E00,004,40000E-30,001,49000E-40,009,63799E-120,002,78152E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26350E-190,000,00000E00,009,93893E-10,001,29206E-20,00
0.6 Jarnac9,92929E-90,00-2,78334E-240,000,00000E00,00-2,60209E-180,00-7,28448E-200,006,07988E-110,002,71502E-130,00-1,73472E-180,004,40000E-30,001,49000E-40,009,63799E-120,002,78152E-160,004,67990E-40,009,99001E-60,00-1,79822E-280,003,26350E-190,004,32481E-180,00 - - - -
0.6 MathSBML9,93461E-90,001,97569E-360,007,00049E-300,001,74810E-280,001,62062E-350,005,54879E-110,002,54325E-136,25,56959E-280,004,40000E-30,001,49000E-40,009,64316E-120,002,65462E-160,004,67990E-40,009,99001E-60,009,63380E-320,00-5,46734E-180,001,55229E-290,00 - - - -
0.6 Oscill8 Core9,94588E-90,11 - - 2,31732E-131006,85051E-12100 - - 1,80736E-1167,4 - - - - 4,40000E-30,001,49000E-40,009,65416E-120,11-4,47282E-14100 - - 9,98996E-60,00-1,12607E-190,005,05773E-190,00-2,63002E-11100 - - - -
0.6 SBToolbox29,92895E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,06453E-110,002,71022E-130,000,00000E00,004,40000E-30,001,49000E-40,009,56892E-120,722,51800E-160,004,67990E-40,009,99000E-60,000,00000E00,005,34194E-131000,00000E00,009,93855E-10,001,29201E-20,00
0.6 SBWOdeSolver9,92928E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,07986E-110,002,71502E-130,000,00000E00,004,40000E-30,001,49000E-40,009,63799E-120,002,78151E-160,004,67990E-40,009,99001E-60,000,00000E00,003,26349E-190,000,00000E00,00 - - - -
0.6 VCell9,92929E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,006,07965E-110,002,71495E-130,000,00000E00,004,40000E-30,001,49000E-40,009,63799E-120,002,78305E-160,004,67990E-40,009,99001E-60,000,00000E00,00-2,23001E-190,000,00000E00,00 - - - -
0.6 copasi9,92938E-90,00-2,07674E-200,001,91804E-190,002,03784E-170,00-3,40595E-170,006,07066E-110,002,71204E-130,00-2,78942E-170,004,40000E-30,001,49000E-40,009,63808E-120,002,77430E-160,004,67990E-40,009,99001E-60,00-1,93343E-190,003,26353E-190,004,29834E-170,00 - - - -
0.6 edu.kgi.roadRunner9,92929E-90,00-6,80336E-170,00-1,15565E-220,00-1,90581E-200,006,47155E-170,006,07988E-110,002,71502E-130,00-2,75813E-200,004,40000E-30,001,49000E-40,009,63799E-120,002,78221E-160,004,67990E-40,009,99001E-60,001,64866E-250,003,26350E-190,003,33718E-180,00 - - - -
0.8 BioUML9,91746E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,26065E-110,003,09692E-130,000,00000E00,004,40000E-30,001,49000E-40,009,62696E-120,003,06349E-160,004,67990E-40,009,99001E-60,000,00000E00,003,25966E-190,000,00000E00,009,92708E-10,001,29052E-20,00
0.8 ByoDyn9,91746E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,26065E-110,003,09692E-130,000,00000E00,004,40000E-30,001,49000E-40,009,62649E-120,003,06365E-160,004,67990E-40,009,99001E-60,000,00000E00,003,25970E-190,000,00000E00,009,92708E-10,001,29052E-20,00
0.8 Jarnac9,91746E-90,005,61812E-250,000,00000E00,00-1,30104E-170,00-6,77626E-210,007,26065E-110,003,09692E-130,007,80626E-180,004,40000E-30,001,49000E-40,009,62649E-120,003,06365E-160,004,67990E-40,009,99001E-60,00-1,05352E-290,003,25970E-190,004,32443E-180,00 - - - -
0.8 MathSBML9,92272E-90,004,00421E-360,001,14469E-290,002,88332E-280,003,69485E-350,006,73551E-110,002,92707E-135,59,87076E-280,004,40000E-30,001,49000E-40,009,63121E-120,002,93785E-160,004,67990E-40,009,99001E-60,001,52152E-310,00-1,78517E-150,003,07038E-290,00 - - - -
0.8 Oscill8 Core9,92446E-90,00 - - 2,28428E-131006,73665E-12100 - - 3,27843E-1151,3 - - - - 4,40000E-30,001,49000E-40,009,63336E-120,00-3,69718E-14100 - - 9,98997E-60,00-9,31939E-200,003,11093E-190,00-3,29756E-11100 - - - -
0.8 SBToolbox29,91565E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,34957E-111,03,12611E-130,790,00000E00,004,40000E-30,001,49000E-40,009,49597E-121,42,58209E-160,004,67990E-40,009,99000E-60,000,00000E00,001,05911E-121000,00000E00,009,92515E-10,001,29030E-20,00
0.8 SBWOdeSolver9,91745E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,26063E-110,003,09691E-130,000,00000E00,004,40000E-30,001,49000E-40,009,62647E-120,003,06364E-160,004,67990E-40,009,99001E-60,000,00000E00,003,25969E-190,000,00000E00,00 - - - -
0.8 VCell9,91746E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,007,26048E-110,003,09687E-130,000,00000E00,004,40000E-30,001,49000E-40,009,62649E-120,003,06500E-160,004,67990E-40,009,99001E-60,000,00000E00,001,51520E-210,000,00000E00,00 - - - -
0.8 copasi9,91732E-90,00-2,40213E-200,001,63166E-190,005,89367E-180,005,42039E-170,007,27465E-110,003,10145E-130,00-1,39420E-170,004,40000E-30,001,49000E-40,009,62635E-120,003,06122E-160,004,67990E-40,009,99001E-60,002,97311E-200,003,25965E-190,00-4,44721E-170,00 - - - -
0.8 edu.kgi.roadRunner9,91746E-90,00-2,89342E-170,00-1,67965E-210,00-5,09814E-200,003,38269E-170,007,26065E-110,003,09692E-130,00-4,58908E-190,004,40000E-30,001,49000E-40,009,62649E-120,003,06398E-160,004,67990E-40,009,99001E-60,008,71770E-260,003,25970E-190,00-4,34137E-180,00 - - - -
1.0 BioUML9,90834E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,008,17025E-110,003,39111E-130,000,00000E00,004,40000E-30,001,49000E-40,009,61675E-120,003,28129E-160,004,67990E-40,009,99001E-60,000,00000E00,003,25684E-190,000,00000E00,009,91796E-10,001,28933E-20,00
1.0 ByoDyn9,90834E-90,000,00000E00,000,00000E00,000,00000E00,000,00000E00,008,17025E-110,003,39111E-130,000,00000E00,004,40000E-30,001,49000E-40,009,61763E-120,003,28098E-160,004,67990E-40,009,99001E-60,000,00000E00,003,25677E-190,000,00000E00,009,91796E-10,001,28933E-20,00
1.0 Jarnac9,90834E-90,00-3,95054E-250,00-1,08420E-190,003,642